RNA id: XM_036976627.1


Basic Information

Item Value
RNA id XM_036976627.1
length 1750
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110523122
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4561350 ~ 4598776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggagttacagagaggagatacagagatgagacacagagaggagatacagagaggagatacagagaggagaagaCATTTAGACATTCTGACATTACACTCCAAATGCAAGAGATGCGTCTAAATCTCTACCAACCCTTATATCTGACGGGCACTCTACCCAGTAAACATGGATATGGGAGAGGCAGCCAATGAAATGCCTTTGTTTAAACCAAAGAGCGACTGTGGGTGGTTAGATCAGCCGTCCTTAACAAAGAGCCCTCCCCTGCCAGCGCGTTAGGCTGTCCGTTCAGCAAGCCCATCCTGGACAGCTCCAGTGTCCTAAACAGAATacgtaggaggaggagagggctcgGACATGGATCTAGGAAGACTCAGCACTGGCCCGTCTGATAGAGatcggtaaaaaaaaaaaaaagatttatatttaaaataaaaaaaaaccgaGAGGCCTTAGAGAAAAGAAACCGAAGGAATTAGCAAAACCCATCCCGGCACAAAATATTAAATTGATCAatggactgaatgagggctgaaTGAAGACTGCCTATAACGCCTATCGATGCCTGTCCAAGGATCTGGATGCCTACGCCATGAACCCAGAGATGACAATGGACAGCATTGGCAATCTGCATGGCGGACTGAGCCACGACCAGGACTTGATGAACAGCCACAGCCCCCATCACACCCGGAACGCGGGGGCTTCTTTGCGGTTACATCAGGATCTGGCTGCTGCATCGTCGCGGTCCGCCATGGTGTCCAGCATGGCAACGATTCTGGACGGAGCCGGAGAGTACCGACCAGAATTGTCTCTCCCGCTCCATCACGCTATGAGCATGCCGTGTGATACATCCCCACCGGGGATGGGTATGAACGGCACATACACCACGTTAACTCCACTTCAACCTTTACCCCCAATTTCAACCGTTTCGGACAAATTCCACCATCcgcatcaccatcaccatcaccaccagcgTCTCTCTGGGAACGTAAGCGGGAGTTTCACGCTGATGCGGGACGAGAGGTGTTTACCAGCAATGAACAACCTCTACAGTCCCTATCATAAGGACATGACCGGGATGGGTCAGAGTTTATCCCCCCTGGCCAGCAGCCCTCTTGGCAATGGCTTGGGTTCTCTTCATAATACACAGCAAAACCTCCATAACTATGGCACTCATGGGCACGACAAGATGCTAAGCTCCAACTTCGATGCCCACACTGCCATGCTGTCCAGGGGTGATCAACACCTCTCACGAGGCCTCGGTGGCCCCACGGCAGGTATGATGCCGCATTTGAACGGGATGCACCACAGTGGGCACCCGGGCCACCCTCAATCCCACGGGCCTGTGTTGGCTTCCAACCGGGACAGACCGCCCTCCTCCTCGGCACAACAAGGTAACAACTCGGGGCAGCTTGAAGAGATCAACACCAAAGAAGTGGCACAAAGGATCACAGCTGAACTGAAGCGGTATAGCATCCCCCAGGCTATATTCGCTCAGAGGGTGCTGTGTCGCTCGCAAGGCACCCTTTCAGACCTCTTAAGGAACCCCAAACCTTGGAGTAAACTTAAATCTGGAAGGGAGACCTTTCGAAGGATGTGGAAGTGGCTGCAGGAACCCGAGTTTCAGAGGATGTCAGCCCTACGGCTTGCAGGTAAGACAAGGTACCAGTAGAGAGCACGCCATGATTGGGTCAAATGGGATGCATTGTCAGACACTGACAACATTGTGCACAGGGACTCAAAACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409335 lncRNA upstream 7130 4553611 ~ 4554220 (+) True G360310
TU409317 lncRNA upstream 39073 4519335 ~ 4522277 (+) True G360292
TU409318 lncRNA upstream 42060 4510584 ~ 4519290 (+) True G360293
TU409314 lncRNA upstream 43758 4509132 ~ 4517592 (+) True G360289
TU409334 lncRNA upstream 52766 4508296 ~ 4508584 (+) True G360309
TU409322 lncRNA downstream 11238 4578268 ~ 4578624 (+) True G360297
TU409347 lncRNA downstream 20373 4587403 ~ 4587872 (+) True G360321
TU409305 lncRNA downstream 47986 4615016 ~ 4618190 (+) True G360280
TU409325 lncRNA downstream 76364 4643394 ~ 4667486 (+) True G360300
TU409359 lncRNA downstream 94034 4661064 ~ 4661487 (+) True G360333
XM_036976532.1 mRNA upstream 926235 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 1232084 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 1232084 3261540 ~ 3329266 (+) True musk
XM_036976613.1 mRNA upstream 1412760 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976633.1 mRNA downstream 87116 4654146 ~ 4670585 (+) True LOC110523121
XM_036976636.1 mRNA downstream 341429 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA downstream 342735 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA downstream 342735 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA downstream 342736 4909766 ~ 5339339 (+) False tcf4
TU409312 other upstream 13494 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 141281 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 215833 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 549994 4008748 ~ 4011356 (+) True G360121
TU408266 other upstream 1182031 3347509 ~ 3379319 (+) True G359438
TU409301 other downstream 71986 4639016 ~ 4648000 (+) True G360276
TU410157 other downstream 729840 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 1236798 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 1236798 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 2618896 7185926 ~ 7189819 (+) False G362297

Expression Profile