RNA id: XM_036976623.1


Basic Information

Item Value
RNA id XM_036976623.1
length 2047
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110523122
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4561350 ~ 4598776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagttacagagaggagatacagagatgagacacagagaggagatacagagaggagatacagagaggagaagaCATTTAGACATTCTGACATTACACTCCAAATGCAAGAGATGCGTCTAAATCTCTACCAACCCTTATATCTGACGGGCACTCTACCCAGTAAACATGGATATGGGAGAGGCAGCCAATGAAATGCCTTTGTTTAAACCAAAGAGCGACTGTGGGTGGTTAGATCAGCCGTCCTTAACAAAGAGCCCTCCCCTGCCAGCGCGTTAGGCTGTCCGTTCAGCAAGCCCATCCTGGACAGCTCCAGTGTCCTAAACAGAATacgtaggaggaggagagggctcgGACATGGATCTAGGAAGACTCAGCACTGGCCCGTCTGATAGAGatcggtaaaaaaaaaaaaaagatttatatttaaaataaaaaaaaaccgaGAGGCCTTAGAGAAAAGAAACCGAAGGAATTAGCAAAACCCATCCCGGCACAAAATATTAAATTGATCAatggactgaatgagggctgaaTGAAGACTGCCTATAACGCCTATCGATGCCTGTCCAAGGATCTGGATGCCTACGCCATGAACCCAGAGATGACAATGGACAGCATTGGCAATCTGCATGGCGGACTGAGCCACGACCAGGACTTGATGAACAGCCACAGCCCCCATCACACCCGGAACGCGGGGGCTTCTTTGCGGTTACATCAGGATCTGGCTGCTGCATCGTCGCGGTCCGCCATGGTGTCCAGCATGGCAACGATTCTGGACGGAGCCGGAGAGTACCGACCAGAATTGTCTCTCCCGCTCCATCACGCTATGAGCATGCCGTGTGATACATCCCCACCGGGGATGGGTATGAACGGCACATACACCACGTTAACTCCACTTCAACCTTTACCCCCAATTTCAACCGTTTCGGACAAATTCCACCATCcgcatcaccatcaccatcaccaccagcgTCTCTCTGGGAACGTAAGCGGGAGTTTCACGCTGATGCGGGACGAGAGGTGTTTACCAGCAATGAACAACCTCTACAGTCCCTATCATAAGGACATGACCGGGATGGGTCAGAGTTTATCCCCCCTGGCCAGCAGCCCTCTTGGCAATGGCTTGGGTTCTCTTCATAATACACAGCAAAACCTCCATAACTATGGCACTCATGGGCACGACAAGATGCTAAGCTCCAACTTCGATGCCCACACTGCCATGCTGTCCAGGGGTGATCAACACCTCTCACGAGGCCTCGGTGGCCCCACGGCAGGTATGATGCCGCATTTGAACGGGATGCACCACAGTGGGCACCCGGGCCACCCTCAATCCCACGGGCCTGTGTTGGCTTCCAACCGGGACAGACCGCCCTCCTCCTCGGCACAACAAGGTAACAACTCGGGGCAGCTTGAAGAGATCAACACCAAAGAAGTGGCACAAAGGATCACAGCTGAACTGAAGCGGTATAGCATCCCCCAGGCTATATTCGCTCAGAGGGTGCTGTGTCGCTCGCAAGGCACCCTTTCAGACCTCTTAAGGAACCCCAAACCTTGGAGTAAACTTAAATCTGGAAGGGAGACCTTTCGAAGGATGTGGAAGTGGCTGCAGGAACCCGAGTTTCAGAGGATGTCAGCCCTACGGCTTGCAGGTACCAGTAGAGAGCACGCCATGATTGGGTCAAATGGGATGCATTGTCAGACACTGACAACATTGTGCACAGGGACTCAAAACTATGCGTGCAAAAGAAAAGAACAAGACCCAAGCAAGGAAAGGAACAATACACCAAAGAAATCCCGGCTGGTTTTTACTGACCTGCAACGTCGCACCCTGCTGGCCATCTTCAAGGAGAACAAGCGTCCGTCCAAAGAGATGCAGATGACCATCTCTCAGCAGCTGGGACTGGAACTCACCACCGTCAGCAACTTCTTCATGAACGCCCGCAGGCGCAGCCTGGACAAATGGATGGACGAGGGGAGTCCGGGAGGAGCCTCCACAGCCTCCAGCTCTTGTACCAAAGTGTGatggataggggggggggggggag

Function

GO: NA

KEGG:

id description
K24170 ONECUT2; one cut domain family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409335 lncRNA upstream 7132 4553611 ~ 4554220 (+) True G360310
TU409317 lncRNA upstream 39075 4519335 ~ 4522277 (+) True G360292
TU409318 lncRNA upstream 42062 4510584 ~ 4519290 (+) True G360293
TU409314 lncRNA upstream 43760 4509132 ~ 4517592 (+) True G360289
TU409334 lncRNA upstream 52768 4508296 ~ 4508584 (+) True G360309
TU409305 lncRNA downstream 16240 4615016 ~ 4618190 (+) True G360280
TU409325 lncRNA downstream 44618 4643394 ~ 4667486 (+) True G360300
TU409359 lncRNA downstream 62288 4661064 ~ 4661487 (+) True G360333
TU409773 lncRNA downstream 117330 4716106 ~ 4716757 (+) True G360673
TU409780 lncRNA downstream 121272 4720048 ~ 4720485 (+) True G360680
XM_036976532.1 mRNA upstream 926237 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 1232086 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 1232086 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 1412762 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976633.1 mRNA downstream 55370 4654146 ~ 4670585 (+) True LOC110523121
XM_036976636.1 mRNA downstream 309683 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA downstream 310989 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA downstream 310989 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA downstream 310990 4909766 ~ 5339339 (+) False tcf4
TU409312 other upstream 13496 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 141283 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 215835 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 549996 4008748 ~ 4011356 (+) True G360121
TU408266 other upstream 1182033 3347509 ~ 3379319 (+) True G359438
TU409301 other downstream 40240 4639016 ~ 4648000 (+) True G360276
TU410157 other downstream 698094 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 1205052 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 1205052 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 2587150 7185926 ~ 7189819 (+) False G362297

Expression Profile