RNA id: XM_036976633.1


Basic Information

Item Value
RNA id XM_036976633.1
length 1460
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110523121
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4654146 ~ 4670585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGTTACTGGCCAACTTTCGTCAAGGAACTCAGGAAAGTGTTTTGATTCGAGAGAGGAGTTGAGTTTTGGACAGTGTCTACACAGTGTGACACTGTTTTCTATATAATCGGAAGTAAATAAAATACTATATTTACAGTTGTATTCTGTAAAAATGGTCGGGGTAAAAGTAATCGGGAATGATTCAGAATTTCAACCTGAGTTAACAGCCGCCGGTTCGAGACTTGCCGTAGTGAAGTTCACAATGGCAGGGTGTCGACCCTGTGTCAGAATATCCCCTGCTTTCAACATGTTGAGTAACAAGTACCCACACGTGGTTTTCCTTGAAGTCGATGTACACGTCTGTCAGgcaaCGGCTGCCGCCAACAACATCTCTGCCACGCCGACGTTTTTGTTTTTCCGTAACAAAGTGCGCGTCGACCTCTATCAGGGTGCCGATGCCTCAGGACTAGAGGAGAAGATCAAGCAGCATGTAGAAAACGACCCTGGAAGCAACGAGGACTCGGACATTCCCAAGGGATATATGGACCTGATGCCGTTTGTGAACAAAGCTGGCTGCGAGTGCCTAAACGAGAGCGACGAGAGCGGCTTTGACAACTGCTTAGTCAAGGACACCACCTACCTGGAGTCTGACTGCGATGAGCAGCTCCTCGTTACGATGGCCTTTAACCAACCTGTCAAGCTGTACTCCATGAAGCTGCAGACCTCTGACTTCGccCAGGCTCCAAAGTGTGTGAAGATCTTCATTAACCTTCCTCGCTCCATGGACTTTGACGATGCCGAGCGGAGCGAGGCCACCCAGACCCTGGACCTGGCCGAGGAGGACTTCAAGGACGACGGGTTGATTCCGCTGAGATACGTCAAGTTCCAGAACGTTCAGAGCGTCACCATGTTTGTGAAGAACAATCAAGGGGATGAAGAGACGACTAAAATCAATTACCTTACTTTTATCGGGACCCCTGTACAAGCAACGAACATGAACGACTTCAAACGGGTTGTGGGCAAGAAAGGAGAGAGTCACTGAGGCGGCGGAGAGGAGAAGAATGGCCATATTGCTGTGGTGATCGCTGTCTGTCTGCCAAGTCTGCTGGCTGGGTCCGGCTCAGAGTCAGCTCTACTGTAATACAGCACTGACCAACAaccatgtgtcccaaatggcaacatattccctttcatagtgcactgcttttggaCCCTTTTTTTTATAGTACAATACTTGTTTTGGACCTGGTATCCCATCCTGAAGTTAGGGCTTTGATTCGGGATCCAAAGACATGTCtgaggtctaaagtagtgcactatatagggaaatagGGTGCCGTTTTGGATGTGAAGTCTATGAGCTGTAGTCCATGTCCGCCAGTGAAATCACCAAGATGAGGCATCTCAAACAATTCATTCAAGCATTTTTATTGTAATTCAGACAaacactgtaaataaaaacacaaacaaaaaggCA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409305 lncRNA upstream 35956 4615016 ~ 4618190 (+) True G360280
TU409347 lncRNA upstream 66274 4587403 ~ 4587872 (+) True G360321
TU409322 lncRNA upstream 75522 4578268 ~ 4578624 (+) True G360297
TU409335 lncRNA upstream 99926 4553611 ~ 4554220 (+) True G360310
TU409317 lncRNA upstream 131869 4519335 ~ 4522277 (+) True G360292
TU409773 lncRNA downstream 45521 4716106 ~ 4716757 (+) True G360673
TU409780 lncRNA downstream 49463 4720048 ~ 4720485 (+) True G360680
TU409781 lncRNA downstream 50029 4720614 ~ 4720825 (+) True G360681
TU409800 lncRNA downstream 59012 4729597 ~ 4729842 (+) True G360694
TU409802 lncRNA downstream 62349 4732934 ~ 4733148 (+) True G360696
XM_036976624.1 mRNA upstream 55370 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA upstream 55370 4561352 ~ 4598776 (+) True LOC110523122
XM_036976626.1 mRNA upstream 55573 4561350 ~ 4598573 (+) False LOC110523122
XM_036976627.1 mRNA upstream 87116 4561350 ~ 4567030 (+) False LOC110523122
XM_036976532.1 mRNA upstream 1019031 3547948 ~ 3635115 (+) True grin3a
XM_036976636.1 mRNA downstream 237874 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA downstream 239180 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA downstream 239180 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA downstream 239181 4909766 ~ 5339339 (+) False tcf4
XM_036976638.1 mRNA downstream 239181 4909766 ~ 5339339 (+) False tcf4
TU409301 other upstream 6146 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 106290 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 234077 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 308629 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 642790 4008748 ~ 4011356 (+) True G360121
TU410157 other downstream 626285 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 1133243 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 1133243 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 2515341 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 2515445 7186030 ~ 7189819 (+) True G362297

Expression Profile