RNA id: XM_036976648.1


Basic Information

Item Value
RNA id XM_036976648.1
length 5071
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110524934
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5417468 ~ 5458865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTGGCAGGCCAGAGGAACGAGGTTGAGACACTCCTGAACTGAGCTGAGTGACTTGGCAGGCCAGAGGAACGAGGTTGAGACGCTCCTGAACTGAGCTGAGTGACTTGGCAGGCCAGAGGAACGAGGTTGAGACAACAGAGAGGCCCAAAACGTAGAGGCTTGTGAGTACTTGGTTACTGCTTGCTTGGTGGGAGCTGCAGATAGCAGGTCCTGACCTCTCTACAGGACATACTGTGAGGAGACGACAAGACTTCTCCTACAGGGTCACCCACCACAACATGCAAGGGAAAAGTGAACACGAACACCAAGACAATAATATGGAATCAGACTTTGATCCCAACAAGCAGCCTGAAAGTCCCCCGTCTGAGAACGAGCCCTCCAATCCTGTCAAAGTCCGCCAGAACCCCAAATATCAGCTGTTCCTGGATGGAGACACGATTAGGAACGGATCCAGGGATACGAACGGAACGTCTGCGAGAGAGAACGGGAACGGGAGAGAACCCAGGAACAGTTCCCGTTTGGACAGCGCTAGCTCCAGATTCGGGCCAAACTTCCGCGGGTCCCTGGAATCGCTTGCCTCTCGAGACTGGGACACCATGTCAGACAGGGTGGGAGGTTTTGAGAGTCCTCCCAGGGTGTTCAACAGTCCCTACGCTACAGCGGCTTCCACGGAGTACAACCCTGGAATGAACcggatgtcagagcaaaagATGCAGGAGGTGATGTCTCCAGCCACATCAGAGCTGAACCTGTTCAACAGCTACAACAGCAGAAGTAGCAGCCCTGTGCTCTCCTTCACCTCGGCTGCGACCTCCTCACGTGCACGCTTCTCAACCTTCGACTCTCTCAGGAGGCGGGACCAGCCGGTGATGCCAAGCCAACTCCCCATACGGTCCACAGCGTCGCCTGTTGCTATGCCCAGCAAGAGAGACTACATCGAGGAGCTGACCAGACAGATGGATGCCTGTCAGAAGAGGAACCAGTTCCTGGAGGCAGAGAGCATAGAGATGGACAAGGAGAGGAACCAGATCAGGTTGGAGATGAGAGGCCTGTTGGTGAACAACGAGGACCTTCTCAGAACCAACAGTACCCTGCAGATGGAGATGaacaggatgaggatgaggatggtagagctggagagagacaacacGGCCATGACGGAACGCTTCAAAGTTATGGAGACGGAGCTGACCGAGGCCAGGGCCCAGATGGTGGAGGCCAACACTCAGGAATACGCCTTCAACTTCCTGCAACAGTCTCTGAAGAATAAGATACAGGTCGCTGAGGAGGCGCTAGAGAAGCAGACGCTCCATGCCCAGGGGCTGTCAGAGAAGCTGTGGCTATCTGAGAGacagttggaggatctagaggtGGACAAGGAGACACGGGACAAGAAGAGATCAGAGCTCAGCGACACGGTCTTCAGACTGGAGACTGAGCTAGAAGAGGCTCTACAGAAAGCCACCCAGGCGACAGCAGAGCTCAGTCTGCAACAGAAGCTACGAGATGACGCCCTGCTGAgggtagaggagatggaggagagtttACTGGAGAGGGGTCAGGAGCTGCAGATAGCCCAACAGACTGTCAGCCGCCTACAGGGACAGGTGTCAGATAAGCTGATAGATAAGGAGCGCTCCCTGGAGGAGGAGatccagctgagagagagagttcagctGCAGTGGAAGCAGGCAGAGAGGAGCGTAGAGGACCTGACCATCGAGCTACAGACGGCCGCACAGACCAAGGAAGACCTGGTCAAGCAACTCAAACAGGCTCAGGAGAAACTGTTAGATCTTGAGAGCGACCTGGAGGAGATGCAGGACAGTGAACAGAGATGGGCCAGCAAGAACAAGAGAGCCATcgaacagACGGAACAGCTCCAGCTGAAGCTGATCCAGCAGAAAGATGTGAATGAGCAGCTGGACAGTGAGAAGAGCATCCTGGAGAGACAGCTGCGGGACCTGCGTGTGGAGGTGGAGAACCTCCAACACACCAGAGTTCATGAGGATGTCATCACTAAGACGGAGAGCCGGGCCAAGGAGCTGGAGAACGCtctgagggtggaggagaggaacaaGGTGGTGATGAACAACACCATCAGTAAACTGGAGAGGAAGAACAACGAACTGTCTGATCAGCTGGAGGAGGAACATAAGATGGCCAAGGAGCAGAAGGACCTGATGTCCCAGAGGATGCGTTCCCTGAAGCGTCAGCTGAACGAGGCAGAGGAGGAGTCCAGTCGTAGAGACGCTCAGCACCGCCACACCCAGAGAgaactgacagaggagagagagaccaccaACAAACTACAGAAACAGCTCCTGGACCAGCACCTCCAACTCAAACGTAAGGAGTCCACCATGGCGATGAGACAGACTCTGGAAGATCTACGTCTGGACCTTAGTGTGGATGAGGAGGACCAGACCCCTCCAGTACCCACGGCCTCCAAGGCCTGAGACACCCTTCCTGGGACAGTATTGCAGCATAGCAGCAACCATACTAGCCTTACTCATAACGCCTTTGTCCTAGATTCAATCCGGCCTGCAGAAGATCCATGTCATAGCGCGATTGACATTTATAGCTCATTTCCCATTGATCCGGCATATTCCACGTGAATGTGGGTCTCAGCGAATGGTGGGAGCGTTGCCTTTAAAACGTGCATAAATGGGACAAAATGAGATGGGATTGAATCTAGGCCATTATTAATAAAAGGTACCATTCATACCACCAATACAGGACCCACAGGGAACATACAGCAGCATCCTGTCAGCCAATTAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCATATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCATATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCAGCACCCGCGTGTTTGATTTTCAGGTTCAGCCAATCAAATCGGGTTCAAAAAAAATTACTGTAGCATctgataaaacatttattttttattttgtattaaatcAATCAAAAATCTGCAGGTAATTGAAAATGTAAACCAGTGTGTCTTTACTTCTTGTGTTCCGTCAGGctgcgtttcccaaactcggtcctctggACCCCAAATGGAGGTTTTTACACTACACCGCTGGTTCAAATGATCTAAGCTTTAATCAGCTGTGTATTCGAACCCCCTTTGGGGTCCCAAGGTCaaagtttaatcagctgtgtattCGAACCCCCTTTGGGGTCCCAAGGTCAAACTTTAATCAGCTGTGTATTCGAACCACCTTTGGGGTCCCGAGGTCAAACTTTAATCAGCTGTGTATTCGGACCCCCTTTGGGGTCCCGAGGTCaaagtttaatcagctgtgtattCGGACCACCTTTGGGGTCCCGAGGTCagagtttaatcagctgtgtattCGGACCACCTTTGGGGTCCTGAGGTCAGAGTTTGTGAAACCCTGCCATAAGGgagtttattttttatgtaaGTAAGTTAAAATCCTATGGGCTTGTATCtttcctgattcattactagTGCCTTAACAGAGATAATCAATtggaaaataaaaaacattttattaaatCAATTGTGTCAAATGTGACTAACAATAAAAATAGACATAGGATTTGGGGATGATGTCATGTTAGAGGGATTTGGGTAATATTGTCTGCAAATTACCAAAGCAAATCTGTTGCAAAATGTAGTTCTATAGTTTGTTAGAAGCATTATACATTCATTTCCACTTATCTTATATCTACGTGGTATTGGGTATTACTGCGCTGTAGACTTTGGGGAGCTGTATTTTATTAATATATATAAATGGAAAAGCTTTATTTTCACACCCATTGAGCAGAATGTGTCTTCCTTTTACGATGCTTGACGGACAGACAGCCTGAATGAGTGAAGCCGGTGGGACCATTTAACAGTATACTGCACTGTTTACAACACTTGTTACTTCAACCCTGAGCGAAACATGGGTGAGCAGAACCTGGGTGAGCAGAACCTGGGTGAGCAGAACCTGGGTGAGCAGAACCTGGGTGAGCAAAACCTGGGTGAGCAGAACATGGGTGAGCAGAACCTGGGTGAGCAAAACCTGGGTGAGCAAAACCTGGGTGAGCAGAACCTGGGTGAGCAGAACCTGGGTGAGCAAAACCTGGGTGAGCAAAACCTGGGTGAACAAAACCTGGGTGAGCAGAACCTGGGTGAGCAGAACCTGGATGAGCAGACCCTGGGAGTGAGTGAGGACCCAAGACAAACGTTTCACAGAAGAGGAAAGAGACCATGTTATTCTCGCGTGGGGAATCTAAAAGGGAATCTATTCTGTCTGCGTTGTGGAAAGCTGCTGGATATGCATCTTACCTGATGGATCTGAATGACTTGCTGTCCTGCTGTTTACATGATACAAGAAAATGGAGACCGGCGACTGTGTACTCTACTGGCATAAACCTACGTTAAACATGCattagacaggacaggacaggtggAATCACTAACAGACACTGTGTACTCAGGCTCCTCCCTCACTGAAGTGGAATCACTAACAGACACTGTGTACTCAGGCTCCTCCCTCACTGAGGTGGAATCACTAACAGACACTGTGTACTCAGGCTCCTCCCTCACTGAGGTGGAATCACTAACAGACACTGTGTACTCAGGCTCCTCCCTCACTGAGGTGGAATCACTAACAGTCACTGTGTACTCAGGCTCCTCCCTCACTGAGGTGGAATCACTAACAGACACTGTGTACTCAGGCTCCTCCCTCACTGAGGTGGAATCACTAACAAGTCACTGTGTACTCAGGCTCCTCCCTCACTGAGGTGGAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410571 lncRNA upstream 29476 5387349 ~ 5387992 (+) True G361302
TU410530 lncRNA upstream 63482 5353659 ~ 5353986 (+) True G361285
TU410172 lncRNA upstream 72555 5344307 ~ 5344913 (+) True G361000
TU410152 lncRNA upstream 73315 5279490 ~ 5344153 (+) True G360980
TU409926 lncRNA upstream 78127 5334043 ~ 5339341 (+) False tcf4
TU410623 lncRNA downstream 12212 5471077 ~ 5474621 (+) False G361339
TU410624 lncRNA downstream 12212 5471077 ~ 5474621 (+) False G361339
TU410625 lncRNA downstream 12212 5471077 ~ 5474621 (+) False G361339
TU410627 lncRNA downstream 12212 5471077 ~ 5474621 (+) True G361339
TU410654 lncRNA downstream 71112 5529977 ~ 5531508 (+) True G361365
XM_036976636.1 mRNA upstream 78129 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA upstream 78129 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA upstream 78129 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA upstream 78129 4909766 ~ 5339339 (+) False tcf4
XM_036976638.1 mRNA upstream 78129 4909766 ~ 5339339 (+) False tcf4
LOC110524936 mRNA downstream 118149 5577014 ~ 5577940 (+) True LOC110524936
XM_036976655.1 mRNA downstream 213784 5672649 ~ 5760948 (+) True LOC110522836
XM_036976667.1 mRNA downstream 1029537 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 1029537 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 1029537 6488402 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 118065 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 769468 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 869612 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 997399 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1071951 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 344963 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 344963 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1727061 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1727165 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2231575 7690440 ~ 7692514 (+) True G362554

Expression Profile