RNA id: XM_036976671.1


Basic Information

Item Value
RNA id XM_036976671.1
length 2484
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110523126
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6488402 ~ 6555494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAAGCAGGCTCGTGAGTGGAGGGGGCGATTTCCCTTTCTCAAGAGTCCACAGTCCTTTTCGGATGTGTTAGACCTATGTCTATTccgttcaatttttttttattatatacaTTTCATTTGGCAGACCCCCAATTTCTCCCCGAAATAAAACACAACATGGAATCGAAGATGGAGTAACTCAAGACTCTATTTACCTCTCTTGTTTTACCTCAATTTAATGGACCGGATGATTTCCAAGTCAAACTGTGATTCCCACAGCTTTGCAGAGGAGGTAGCTGTATCCAGTGAGGAGGGAGGCGTATCCAAGGGTGAATATGAAGTTTGCCGAACCCTTGGAAAGCCAGAGGCTGTCTTTTCTTTTGGAAAAGGCCGCCTCTAGGGAAGCCCTGATGTGGAAGGTGTACGTGCCCAAAAAGCCATCTCCCGGCAGTCAGGATACAGACATCTCCCCTGCCCAGCGTGATGAGGCTGTGTGCTGGCTCATTAACCTCCACAATGACACCAAGCTCTATCCAGAGACCCTCTCCCTAGCCATCAGTATTTTGGACAGGTTTTTAGGCACTATAAAGgCCCGTCCAAAGTACCTCCGCTGTATCGCCATCGCCTGTTACTTCCTGGCTGCCAAAACCAGCGAGGAGGACGAGcgTGTGCCGTTGCTGCGTGACTTGGCCAGCAGCAGCAGATGTGGCTGCTCCCCATCAGAGATACTGAGAATGGAGAGGATCATTCTGGATAAACTCAACTGGGACCTACACGCTGCAACACCGCTGGAATTTCTACACATTTTCCATGTCATGGTGCTGTCCTGCAAGCCACGGTTCATGGTGGGTCTGGTGGGGTGTAACCCGGCGCAGCACCTGTCCGTGTTGACCCAGCAGCTGCACTACTGCCTGGCCGACAGCGCCCTGCTACAGCCCCTCTCCCGGGGATCCATGCTGGCGCTGGCCCTCATCACCCTGGAGCTGGAGAATATCTGCCCTGACTGGCTGGCTCTCACGATCAACCTGCTCAGGAAAACACAGATTGACAGTTCTCAGCTGATCCGATGTCGAGAGCTGGTGTCACGTCACCTGTCCACACAGGAAGCTTCCCTGCCTCCCAACACTGTGTACATCTACCAGTCCCTGCACCACAGTCTGGACCCGGACCCCTGCACCTGGGGAAGAGAGTCCGACACCAGGCTCCCAGACACAGACCCACCGGCCCCATCCACGGCCCCTAGGGACAGGAGCCTCTCCTGGGTCTCCTCTACCACCCTGCTCCAGGTCCATGGACCACCCAAACCCAGCCACCACTCCCACCAAGTCTCCCTGCGCTGCAAGCACTCAGCCAAGCGCAAGGTGAGAGCTTGGCTGCTTCAACAACCAGAgtggaggagatggaggtcgACGAATTCTACGAGGGGATCAAACGACTCTACAACGAAGAGAACGGGGGCGCTCCGGAAGGGACGGCGGTAACGGGGGAGGAGCCTCTAGAGGAGAGTCCTGTCCTATTGGTCAGGAGGGAGGGCCACACctccccctgcccccctctccAACCCGTCAGTGTCTCATAGAGAAGAAGAGGATGAAACCAAggccttctcttcctctctacctgaGCTGCAAGGAAAATAAGTCTCAGTATTCAATCTGTCACATGGCATTTATCCACCAACCCCAGGCCTCGATTGAGCCCCCAAAAAAAGTCACCAAAAAAATATGCTATTTCATAACTATTTGTTGAGCACAAATATaaaatgataaaaaaatatatataatataatgataTAAATATTATCCTTCAAAAAAATAGGTCAAATTACTACTTCTCCCTGTGAGTCTCTGTGATGATATTTCTCTAAAGTCATGTCattttatttctgtttttgactAACTAATCTAAGTTTCAATCAGTATATTTATTTTCTTTTGCCTTCCTCTTTtcctgaaataaaaaaaatcattccCAGTATGTTGTCTTTAACCCCTCACAAAACATGTCACGTTAGAGTTTGACTGTAAAAGCGTGTAGAACTATGTTAACCTGAAGtactgaatgtttttttttcatgtttAATAATGGAAATATCCCCTTCCACAACTTTCCTGTCTTTGTCCCGTCACAGTGTGCTGTAGTAGTTTAACCAAAGAATGAACGGTACAAGCTACTGTCATTAATGACGATGCATAAGTGAATCAATTTACCCAATGACGCAATATGTTTTAAGATAAACAACTTTGTTTAAAAGAGGGTTTATccctcatagtgcactactttttagtAGAGGCCTATGGGGGGGAaatagggtgacatttcagaTGCTATCAAGAAGAGGGTTTGAAGATGTAGCTACCATAATTCACCTTATCTTTGCTGTTCAGAAACaacttgctgttttttttttgtttattgcCAAAAGGCTCTTGCTCTGGGGTGCTGGTAACTGCCGATGTACTGCTGACAACTTGTGGCATCAATAAAACAAGTGAAATAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411398 lncRNA upstream 9292 6488446 ~ 6504537 (+) True LOC110523126
TU411434 lncRNA upstream 25856 6450160 ~ 6487973 (+) True G361977
TU411429 lncRNA upstream 69182 6443918 ~ 6444647 (+) True G361974
TU411402 lncRNA upstream 127204 6386299 ~ 6386625 (+) True G361947
TU411367 lncRNA upstream 176600 6336185 ~ 6337229 (+) True G361919
TU411468 lncRNA downstream 7043 6562537 ~ 6563889 (+) True G362011
TU411476 lncRNA downstream 26211 6581705 ~ 6581982 (+) True G362019
TU411503 lncRNA downstream 78699 6634193 ~ 6634797 (+) True G362045
TU411514 lncRNA downstream 137625 6693119 ~ 6694681 (+) True G362053
TU411541 lncRNA downstream 162916 6718410 ~ 6718720 (+) True G362079
XM_036976655.1 mRNA upstream 752881 5672649 ~ 5760948 (+) True LOC110522836
LOC110524936 mRNA upstream 935889 5577014 ~ 5577940 (+) True LOC110524936
XM_036976652.1 mRNA upstream 1054964 5417605 ~ 5458865 (+) False LOC110524934
XM_036976686.1 mRNA downstream 446958 7002452 ~ 7031982 (+) True LOC118964554
XR_005051634.1 mRNA downstream 1175490 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 1186753 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 1190836 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1694665 8250159 ~ 8289257 (+) True slc27a6
TU411026 other upstream 585903 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 672560 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1214426 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1865829 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1965973 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 630432 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 630536 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1134946 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1363428 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 2219838 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile