RNA id: TU411398


Basic Information

Item Value
RNA id TU411398
length 6232
lncRNA type sense_over
GC content 0.45
exon number 4
gene id LOC110523126
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6488402 ~ 6555494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGGACGGGTCCCATCAATATCGTTCGATCTTCTAAACAGTGCGCATTTGAGGGGTTTCTGGACTTTTTCTTTTTTTGAAATAGTTTTGGGCGTGGACATGGCACATTTTAAAGAGGGCTAATGAGAGCAGGAATGTAGTCTTACTAGCTAGGTGTTTAGTTAGGTAACTAGTGGTTTCTAGTTTAGCCACATGGTGTACATGTCCAGAACTGTCATGCGACGTGGTTGTTGGGCTAATGCGTTGCGATTTCTTTCGGGCATGGATTACATACTTCTACAAAGGTTTTACCCGGTTTATTTTAACTCTGGGCAACCCAGTTCAACTTTGATTTAACGTCGCAGGCTGGGGTTTGTATTAGTCAAGTGTTGGAAGTAAACGTTGCTCTTCACGAGGCGTTGATGTTTTGCACGGTGGTAGTCAACCAAAGACGGGGCAGTATGAATCTCAACACCCACGTGACGGGAGAGCCATGTGTGCCAGTGGATCCTATAGCGCCCCTTCGACACCAAAAAGAGTTTGCAGACGTTCCGTCAGGACGACGGTAACCCTGGACTTCAACGCTGTCGTCATGGAGATGGTGTCTCTGTTCACctcaggatgatgatgatgatgtgctgACTGGACAGGTGTGGAGCTCACTGATAGACCGAAGACCGTTGTTGTCACACACTTTCATAACAGACAAATCCTCTGACTGTGCCAAGTGGAGAGAGTCATCCTGTCCAAATGACCTGAGAGACGTCCATGCCTTTTTCCAGCACCTCGTCGCCACACAGGTACACAACTTTGTAATTACATTTTGTAGAGGCCCAATCATTCGGTTCACAGCTGTTTTTAACAGACACACTCCTATCCCACAGCTGGTGTAGTTTGGAGATGTttatcagctaggttgtgtcccaaatggaaccctcctccctatatatatttttctgaCCCCAGGGCCCTGTGGTACAACCCACCGTTGAAGTCACCTTGATGAATTCAGCTCGACAACGTGTCTGCTAGTCCCTTGTTCACCTCACAGTAATGGAATGTATCTGTCTTTATGCCAAAGTGTTTTGTTTCCTGTCAGTAGCCGAGTAGCCGGGGGCCGAGTAGCCGGGGGCCGAGTAGCCGGGGGCCGAGTAGCCGGGCCgaaataaaagttcccagaaatgttccatatgaacAAAAACCTTATTTCTATCAAATGTGGTGTACATGTTTTGTTTTCAACACTGTTAGCGAGAGtttctccttcgccaagataatccatccacctgacaggtgtggcatatcaataagctgattaaacagcatgatcattacacagttgcaccttgtgctggggacaataaaaagccactaaaAATGTGTAGTTGTGTgacaactagggttgcaaagagTCTGAAACTTTTGGGTAaattaagcaaaattccccataTTCATgagcttaaattcatcaaaaaaagtTGGCTTATAACAGTGATGCTGACAGGcaaatgtgtattggaagagatttctgaattgtcttcacccagcatacacccctccaaccagacatgctttatctactcatttgctcgTTTGTTCAAGTGAAGGTCAGGCAAATCGTAGAGAAAGTGAATGAAGTGTATTTCAACTCATTACGTTACATGGGTACACATGGGATGTGTAAATTCACTCACAGGAGACGATTTAAGAAGCATCATGCTCTTCGACAAAAATATAACACGGTTACTGAGAGTTGGGACAGACAGCGGACTGACAAACCAGCAGTGCCATCGCTCGCTTTGTGACTGATCGCTAGATGCCTGTCGTCTGTTCTAGAGGGAGAAGGCTAAACGGCACGTGTCagaactcattccacggagggcccgAGCGTCTGCGGGTTTAAGCTCCTCGCTTGTGCTTGAttaatgaattaaggtcactaattagtaaataACTCCCCTCACTTGGTTGAGCTCTCAGATCTCAGGAAGTGTTGCTGTTACAGTTATTCTGTTGTGTGCATTCATTTGAATTCAATGGGTTTGTCTTGTGTTTTGAGTGAATCATGTCCTTCAGGCCATTGCTGACAAACCAGTCTTACTGCAGAACCTGTATTCAAATGGTATAACActgaacaaacaaaaaatataagcgcaacatgtaaagtgttggtttcatgagctgaaataaaatattccggaaattttccatacacacattgtttacatccctgttagtgagcatttctcctttgccaagataatccatacacctgtggcatatcaagaagctgattaaacagcatcatcattacacaggtgcaccttgtgctggggacaataaaaggccatgcTAAAATATGCAGTTTCGTCACACAACACAGATaccacagatgttttgagggagtgtgcaattgacatgctgactgcaggaatgtccaccagagctgttgccagagaacttcatgttcatttctctaccgaTCTCGTTTTAGAGAATGTGGCATTAAGTCCAACCAGCCTCAACCAGCCTCATCATTTCTGCACCAACTGTCAAAAACTGTCTCGGAAGTTCATCTGCATGCTAATTATCCTCAccggggtcttgacctgactgcagtttgctgtcgtaaccgacttcagtgggcaaatgctcaccttcgatggccactggcacacagGAGACGTGTACTGTTCACGGATGAATCATGGTTTTCAACTGTACCAAGCAGATGGCAGCCAGCGTGGAtagcgtcgtgtgggcgagtcgtttgctgatgtcaacgttgtgaacagggttccccgtggtggcggtggggttatgggcaggtataagctacggacaacgaacacaattgcgttTTTTTTGATTAgcagtttgaatgcacagagatactgtgacgagatcctgagacccattgttGTATCATTCATCCTCTGTCATCACCCCgtggggcagtgcattatcatgctgaaacatgtcaCAAGGATCAGtcagtacacaattcctggaagctgaaaatgtcccagttcttccatggcctgcctaCTCAccagatattttatttatttttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatcagtaccttgtcagctcgggggtttgaactcgcaaccttccggttactagtccaacgctctaaccactaggctacgctgccgccccatatGTCACCCCACTGAgcgtgtttgggatgctctggatcgttGTGTaagacagcatgttccagttcccgccactATCCAGTAACTAaacacagtcattgaagaggagtgggacatcattccacaatcaacagcctgatcaactcgatgtgaaggagatgtcacactgcatgaggcaaattgtgttcacaccagatactgactggtttctgTTGCATGTatatctgttttcccagtcatgtgaaatccatagattagagcctcatgaattcatttcaaatggACTAATTTCctttttatatgaactgtaactcagtaaaatcgttgccGTTGTTACGTTTTCATATCGTTGTGTAAACTAGTAAAAGGttaaattagaaaacaaatcccaTTTTGAACCCAGGGCTGTCTGTTTCACTGTGATGATCAACACTGAtggaatacagtatgtacaggtaaACTGTCTCACTGCCCGTAAATGATAAACGTGACGTCTGTCTTTCTGTAATGTCTGGTTCTCCAGGTGGTAGGGAGAGGGGCTGTGTCAGAGACCCACCTTTTGGCCCTGCTCAGCCCCAGAGAACGCCTTGGGACAGACACCTGCTTGTCTAACTCACTCCGGCTGCACCACACCCAGAATAGACTAGCCATGTCTGCTGCTGGTAAGGACAGGAGTTGGTGTGTTGTTGTACATTTTGTCTAAGAGATGAGTTGTTAATATCCATTAACAATCCAgtacagccccccccccacacacatacagtgcattcaggaagtattcagacccctggactttttcccaCATTTAGTTACCTTACAGACTTAtacttaaattgtttttttccctcatcaatctccacacaataccccctaatgacatcacaataccccctaatgacatcacaataccccctacTGACATCACAAAAATATTACATttccttaagtattcagaccttttactcagtattttgttgaagcacctttggcagcgattacagcatcaggtcttcttgggtttgaagctacaagcttggcacacctgtatttggggagtttcttccattcttctctgcagatcctctcaagctctgtcaggttggatggggatttgtttcttcacagctattttcaggtctctccagagatgttcgatcgggttcaaatccgggttctggctgggacactcaagttcattcggagacttgtcccgaagccacttctgccttgtcttggctgtgtgcttagggtcgttgtcctggaggaaggtgaaccttcaccccagtctgaggtcctgagtgcactGAAGcctgttttcatcaaggatctctctgtactttggtccgttcatctttgcctccatcctgactagtctcccagtccctactgctgaaaaacatccccacaacatgatgctgccaccaccatgcttcaccgtagggatgatgccaggtttcctcataTGACCCTtctcattcaggccaaagagttcaatcttggtttcatcagaccagaaacttgtttctcattgtctgtgagtcctttaggtgccttttggcaaaatccaagcaggctgtcatgtgccttttactgaggagtggcttttgtctggccactttaccataaaggcctgattggtggagggctgcatagatggctgtccttctggaaggttctcccatcaccacagaggaactccggagctcgGTCAGagcttccattttagaatgacagacgccactgtgttctttggggaccttcaatgctgcagaatgttttggtactcttccccaggtctgtgcctcgacacaatcctgtatcggagctctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaacgttgggacctttatatagataggtgtgtgcctttccaaatcacgtccaatcaattgaatttaccacagatggactccaatcaagttggagaaacatctcaaggatgatcaatgggaaacaggatgcacaatttcaaatctcatagcaaagggtctgaatactaacgTAAATACGGTacttctgtttttcattttgtaTAAATTTGCTAAGTTTCTACCCCTGTTTTCAGTTTGTCGTTAATGGGGTTTTGTGCATAGATTGACTAGGTAATGATTaagacattttagaataaggctttaacgtaaaaaaatgtggaaaaatgcacCTTACAGACGAGAGGCTGGAAGCAACACATTGTTCCCAAATTATGTCTGTTTATGGGATGTTACGGTTCACTTGTCCCAAAGGATGTTATGTTAAATATGTcgatctgcccttgagcaagtcgcataaccctaaccctaatgtgctCCGGGGCGctgtactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctaacGTACTACTATGaccgaccctgtaaaacaacacctatcgtactactatgactgaccctttaaaacaacacctatcgtactactatgactgaccctgtaaaacaacacctatcgtactactatgactgaccctgtaaaacaacacctatcgtactactatgactgaccctttaaaacaacacctatcgtactactatgactgaccctgtaaaacaacacctatcgcactactatggctgaccctgtaaaacaacacctatcatactacccaGCTAACTATACCCAACAAGCAGGCCAGTAGTTTCCTCCCCCAGCCCACTACCAGCCCGGTAGGAGATGGCTCTGGTAgttcacaacccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411434 lncRNA upstream 473 6450160 ~ 6487973 (+) True G361977
TU411429 lncRNA upstream 43799 6443918 ~ 6444647 (+) True G361974
TU411402 lncRNA upstream 101821 6386299 ~ 6386625 (+) True G361947
TU411367 lncRNA upstream 151217 6336185 ~ 6337229 (+) True G361919
TU411323 lncRNA upstream 245158 6243031 ~ 6243288 (+) True G361879
TU411468 lncRNA downstream 58000 6562537 ~ 6563889 (+) True G362011
TU411476 lncRNA downstream 77168 6581705 ~ 6581982 (+) True G362019
TU411503 lncRNA downstream 129656 6634193 ~ 6634797 (+) True G362045
TU411514 lncRNA downstream 188582 6693119 ~ 6694681 (+) True G362053
TU411541 lncRNA downstream 213873 6718410 ~ 6718720 (+) True G362079
XM_036976655.1 mRNA upstream 727498 5672649 ~ 5760948 (+) True LOC110522836
LOC110524936 mRNA upstream 910506 5577014 ~ 5577940 (+) True LOC110524936
XM_036976652.1 mRNA upstream 1029581 5417605 ~ 5458865 (+) False LOC110524934
XM_036976666.1 mRNA downstream 9292 6513829 ~ 6555494 (+) False LOC110523126
XM_036976671.1 mRNA downstream 9292 6513829 ~ 6555494 (+) False LOC110523126
XM_036976672.1 mRNA downstream 24587 6529124 ~ 6555494 (+) False LOC110523126
XM_036976673.1 mRNA downstream 26382 6530919 ~ 6555494 (+) False LOC110523126
XM_036976686.1 mRNA downstream 497915 7002452 ~ 7031982 (+) True LOC118964554
TU411026 other upstream 560520 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 647177 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1189043 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1840446 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1940590 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 681389 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 681493 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1185903 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1414385 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 2270795 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile