RNA id: XM_036976676.1


Basic Information

Item Value
RNA id XM_036976676.1
length 7412
RNA type mRNA
GC content 0.57
exon number 16
gene id LOC110524941
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6562531 ~ 6726634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTATTTGCCGTTCTCCTTGCTGCAGTATATTATCAACACTTTGCATCTATGGAACTGGACTGGGGATGCTGAACCGCATCAAGGGAACAATATTGATTCAAATGTTATCCTGTTGAGTACGTCCATATTCTCAATCTATCGGCAATCAAGGTGGAACTTTTAGAGAAAGTAGGTGAATCAAGTGTCTAGTGCgcaaaaagtttttttttctgaCGGGGCAAATTGACCTGATCCCGCTGCAACCAGCTCGCCGAGGAGAGAAGAGCGCTCGCCTTTCTCCCAGCCCAGTGGATTGTAGCAAATTCTATTGTGATGCTAAAATGAAGTCGTAAGAGGGAGAGGGCTGACCAACGATCAGAAGTGAAGCTATCCACGGGATTTCTGCAAAATCCATTTAAAGTTAACATGTTTTTTTCGTTTGTTCCATCCATTTAATGTTATGTTTGTTTAGCGTTTCATTTTCACCACTTGTTGTTGACTGTTGGAACGAAGTTAAATTGTTTCAACAGACAGACTGcggcgagagagagaaggcaaaCCATGTTTCATTCGCTGACTAAGATTCGGTAGTGTTAGGAAATGATTTAGCCTGTCTGATAGGAGTGGACATGCCCCTCTCGGTATGCGCTGCAGAAGACTTTAATAAGAAAAGGAAAATATAACAAATCATTTATTCAATCTTTTCGAAATCATTTCCCCTCTGCTGTGGGTCTGGTGGACTGAATAGGACCCGAGCCACCAGGACCAGGCTTCCTCGGCAGTGCTAGTGATTATGGATAGCAGTCTCcccagctacagtacagtcacaCACCGAGGAAAGACGCTGTTTCTGGAGGCTCGACTCCTGGGTGGGGCGCCCTGGGGCTTTCAGCTCAAAGGAGGTCTTGAACATGGAGAAGAGTTGATCGTCTCGAAGGTTGAGGGAGGTGGGAAGGCGGACCTGTTGGAACACCCCCTGTTGCCAGGTGACCAGGTGGTTGTCATTAACGACGTGGAGCTCAGTGGATTCAGGCAGGAAGCCATCTCATTGGTCAAAGGATCCTACAAGACTCTTCGACTCACTGTTCGCAGGGAGTCCTTCCCAGGCCCCTGCTGTGATGAACCCACCCCTCTGACACTACCTTCCATCGCCCCTCCCTCCAGCCACGGACCCCCGAAGGAGACCCGTGGAGGATGTTCTGGAGGAGTTAAACTACGCATCAAGAACAGaCGCAGCGAGCCCGTCTCCAGACCACACTCGTGGCACTCCACCAAACTAGGCGAGGGCCAGCCAGACCCCAGCATGGCGCAGATATCCCAGGGCACCATAGACCCTCCCTGGCATCACACATTCAACTCCAGtgcgtccactacagacctgtcagGTTACGACCCAGGTTACCTGAGGAAGAGTCCAGACCAGTACAGTTCTAGAGGAAGTATGGAGAGCCTTGGGGAGCACCACGGCCACCCAGCCTACAGttCTTCCTGCCACCAGCTGTCTGCCTCCAAGTCCTCCAACAGCATGGACCACCTTCACAGCAAAAGGGACTCAGCCTACTCCTCCTTCTCTACCAGCTCTAGTATCCCAGAGTACCTAGCGGCCGCTCCGACCTTTAGTAAGGAGAGGTCATACTCCATGGAGACGGTTCCACAGAGGGGTGGGGTTagcggaggagggggaggggccgTGGCGGAGGGCATGCAGCATGCTGACATCCGATACATCCGTACGGTCTACGACCCCCAGCAGGGAGGTGCCCAAGAGCACGAGGTCAGCTCCACTGCATTGCTACGCAACCACGAGGCCGGCGGAGCGGGTTCTCATAGTGGGGGCAAGGCCTCCTGTCACCGCGgcagtagtagctgtagtaacagcagtagaggAAGCAACGGCGGTAATAACCCCAAACGACACAGCGTTGGGCCAATCTGGGGTCAGTCTCAATCCGCCAGCCGCAGTTCCTATGAAAGCCTGAAGGGGGCGCCGGCTCCTCCCATGCGGAGTGACAGCTACGCGGCGATCAGGCACCACGAGAGGCCCAATTCCTGGTCCAGCCTGGAGCAGACTCGCTCCCTCAGGGCTCTCCACAAGGGGTCCACCTTCTCCTGGTACCACTCCTCTGGCTCCGTGGCCTCCGGCTCGGGCAAGGGCTCCTACGGGGCCGAGGGCCAGCTCCACACCGTCATAGAGAAGAGTCCTGAGAGCAGcCCCACCATCAAGCCCAAACAGGGCGTGGGTCAAGTCCCCCAGCCCCCTCAGCCCCAGAATACATCTGGCCGCCTCATGTCGCCCCAGGGCATCTACCCCGTGCCCCCTCCGGAGACCCACTATGCACAGATGCCCACcagcagccccagccccagccccagcagtGTCTACCCAGGCCTGGCCAGGGAGAGCAGtctgagcagacagagagagctcCAGGGGTTAGGAGTGGGGGTCAGTGTGGATACAGGGATTGAGGTATCTGTAGAGAACGGATACCAAAGCAACACTTTCAACTCTTATGTCACCTGTTCCAACCAGCCTCAGCATCATGACTTAGCTCCGCCTCCAACCAAACAGCCAGCCCAGCCTGTTAACAGAGGGGGTGACAGAGGACATGAGGAGACCCAAACCAAACTGGGTCTCTCCGGGTCTCATTTGAAGGGGGAGGGACAAACCGTCTCCCGAAGGCAGAGCCAGCAGGGTCATGGACAGGTTCAGGTGTACAGACCCTCCTCAGCCCAGTCCATAGGCCAGGAGAGGAGGGACCCATACACTCCAGTCCAGCCGCGGAGAGAGAGGCTACCCAGGTATTCCCAGGGCTCAGAGAGTTACACTGAGAAGCATCAGGTCAGACACACTGAACACAGCCATCCAGACCCTCAGCCTCCCACTACCATGCCCACTAAGATATCCAAGGTCCACGTTCCTCAGCGGATCAGGACTAGCAGTACCCCAGCCAAAGGGCCTGATCATCGAGTCAACAACCAGAGGTCCAGGTCCCCCATCCGGCACTACAGCGAACCCAGTCCACCCCACCACCAGAAGAACCAGAGGGGACCAGAGCACCCCCTGACCCGGCTAGAGAATGCCCTAGTGGAGGTTCAGCGTTGTGCCAGTCCAGAGAGCTCCACTAGGAGTCGGAGCAGCCACCAGAGGAACCCGTCTGTCCTGGAGAAGGTAAACCGGTTCGAGCGCCACGAGCAGAGGAAGCAGAGGAGTCAAAGCATCAATGCCACCCACACCAACCtgggaccctcctcctcctcccgtccaactcagccccagcctcagcccaagCACCATGAGAGGGCCATGAGCTATGGTACTGGTATGGATGACCTGCGTAACATGCTGGAGAGAAGCAGCAGCCCCAGCAGCACCTGCAGAACACTGAGCTCCTCCTCTAGCGCACATCATGGGAAAACTACGGTGGCCCACAAGGGTCATCATTACGCAGAGCAGCAGAGGCCAGGAAGTTGTGATCAAGCCAAGCCCCAGACCTTCAGGGACCCCCACCACCAGCCTAACCCCATGGACCCTAACCCTGGCTCGGCCCTACAGAGGAGCAGGAGCAGCTTCCAACTGGGGAGCCAGGAGGAGAACGGCCATGACAAGGACAGAGAGTTCCATTGGAGGGATGACCTGCAGGACCTACTGGGGACCATCCAGGACACGTCCTTTAACCGGGCCTACAGGGACAGTATCAAGGACGCCCAGTCCAAGGTGCTCCGATCCACCTCCTTCAGACGCAGGGACCTGGGAATCAGCTCCAGCTCTAACCAGAGCTCCAACAACCCCCCTCCTGGTGTCAACAACAACGCCCCTCCTGGTGTCAACAACAACGCCCCTCCTGGTGTCAACAACAACGCCCCTCCTGGTGTCAACAACAATCCCCCTCCTGTCCCCGCTAAGCACTTATCCTTGGAGCGGAAGGCAGTGGCCCCCAAGACCGGTCCCAAATCCTCCATTGTCACCACCACTGTCCCAGCCTCCGCCCCAGCCACTCGCCTGTCCCCTCACACCCCCAAAGAGAGGCACACGATCACGACCCCagacccagtcccagccccaaccacctctccctcccctcacacCCCCAAAGAGAGGCACACGATCACCACCCCagacccagtcccagccccaaccacctctccctcccctcacacCCCCAAAGAGAGGCACCTTGTCACCCCCAAGCCCGAGAGGTTCAGCCCCCCAGAGCTCCCCAGTGTCCCAGCCTTGGGCCCACCAGTCCCGGCCCGAATCGGTGGGCGTAAGAGGCTCACCATGGAGCAGAAGAAGAGATCGTACTCTGAGCCAGAGAGCATGCACGAGGTGGGGTTAGAGTCTGACCCGAGGAGGAGTGCCCAGCACCAGCAGATCCTGTTCCAAGGCACAGAGACCAGCGTGGCAGACCGCAGGAGGATGTTTGAGGTGGCAACCAGTCGCAGCCTGAGCTCCAGCTCCCAGGCTCCTCAGGCCCTCCAGGGCTCCCGGGCTGGTCTAGCCTTCTCCCGGCCGGAGCTCTGGCAGCTGCAGCAGGACGCCCTGGCCGACtacatggagaggaagagaggctggaggacagacagggacagggacaggtccGAGGAGAGACGGCATCGTCACCGGCCCCACAGTGCCTACCTCCAGCCCTTCACAGACACCCAGAGTGTCtcttccacctccaccaccagccTAGCCTCTCTCCAGGATCTGTTTGGCCCAGAAAGGAGCCTGTCTGGTGAGGAAAGGCTCTGCTCCACCCTGCCTCCCGGTCTGCAGCTCCAGGACAGTATCCACCCAGACAGGGTGACCACACCACACATCCATACCCAGGCCCCCACCTCAGTCTCCAACTCCCACCAATACCCCACTGGATCCAACAGGCCTCTGGAGGGAGTCCCAGCCAAGGCCTACGAGGCTTTCCGGAGCCAGCGAGGCGATGTGGCCTTTGAAAGAACGGCTCCAGCCCGCAGCTCTGGGAAGTCCGCCTCGGCGGAGGATCTTCTAGAACACTCTGAGGAGAGGCCACAGCACTTCAGATCCCACTCCTCGCCCTCTGTAGAGAGGCTCGACCAGgACTTCATGACAGGAGGAGATCTGAGGATGTTTCCGGACTTCTCTAATGAACCCCAGCTGTTCacacaccatgacaacaacagGTCCATGAACAAGCAGAGTTCAAAgcgtcctgtctcagcctcccaGTCCCAGTATGTACCCACCCACTACCTGCTGAATCAGGGTCCTTCCCAAAGCAACACCCctgtgatgaggagagagaggcagaggaaccCCGACCGCCAGCGGGCTCTTAGTGCCTCCGGCCTGGCTGCCTCTGTAGGTCTACCCTGCCCCTTCTCCTCCCCAGGCACCAGCCCCAACACTAGCCTTGACTGGCAGGTCAGCGAGAGGTTAAGCCAGGGAAACCTGGATGCCATCGCCTTCCCCTGCCTGTTGCAGGTTGACGCTCCCAGAGCCGTGTCCCCAGAGACCAGGCGGAACCCCACAGCACATCAGGGCCAGAACCAAGATCTGCAGACCAGGACCAGACTGGGCTCATCAGACACCAGCACCTCAGAGGAGACCCTGAAAGACTTCCCCATAGAGAGTTCCGTACCAAAGAACATCCTACCCCTGGCCATACCTGAGACCTCTCTAACCCCACCTCCTCCTAAAACCTCTCCCAGACCACACCCCCTGCTCTCCCTCCGCATCTCAGAGTCCAACCTGCAGGAGACCCCGCCCTTACACATAGCCCCGCCCACACAGGTAGTCCCTCCAATAGTCTCCTTACAGGACTATGACGAGGTGTTCCTCCAGGAGCtggcccctccctcccctcctcctcccccgctCCCCATCAGGGAGACGGACATCACAGAGGActtcccacctcctcctcccctcctcctcctcccctcctcctcctcctcacccccagACAAAGAGGAGCATCGTCCTGAGCTACAGCACTTCAACAGCTGTGAGTTCCTGGAGGCTGTGTGTCCAGAGAGAAGACCATctatctcctccccttcccctcagaCAGTCCCCCCCTCTATCCCCCAGCCTGAGACTCCGATCCACCAGACCCCCATCGACCCCAGCAACAGTATCCCAGATCCCCAGCAGGGGCCTAGCGGTGAGGAAAGCCTGGGGTTAGAGTACCATCTCCTGGCCAGGAGGGAGAGGTCTGCTGGGGAGCTGAAGGTGGAAGCCCTGGTCAGACAGCTGGTGTCCCGGGGGGATAAGACCCTGAGCCCGATGCTGGACACCTGGCCCGGGGGCGGACGGACCAGCACCATGGACCTGATGGAGGAGATCTTCCCCGCTGGGGGAGGGAGGTTGCCGTGGCAACGCCGTAGGAGCAGCACCTGGCTGGAGGAcagAAGTCAAGATGGCGTCTGTTCTACAGGACCTAGTCTGCTGCAGAAAACAGAGGCGGGAAGAGGAGTAGATCTGGATGAGGAAGAGGCAGACCTCAATCAGAAAAAGGTGGAGCTACTCCAGGCTCTGACCCTTAGCGTTGCCTCActccgagaggagagagaggttctGGGTGAGGAGCAGAGGAGGTTCCGGGCCCTAGGGGGCCACATGGAGAGCCTGGTCCAGGAGCGCTGTAAGCCCAACGAGAAGGAGAAGTACAGGATGTTCATCGGGGACCTCGATAAGATAGTCAACTTATTAATGTCTCTGTGTGGCCGGCTGGCCCGGGTCCATAACGCTCTCTACGAcctggacagagaggaggagacagaggacagcGCAGAGGAAAGGGAGTCCTTACAGCAGACAGGATGTCTATCTCCTCTAGTTAAACCAGGAGTCTCTCTGTGTAAAGACTCTATTCGCCTATCACTAacagtctctctctgccctcGGGAATCTGTGTCGTCAGCACCAGGATGTCTTTAATAATCTATATATCTGTGTTAACTCAGGAGTCCTTACAGCAGACAGGATGTCTATCTCCTCTAGTTTAACCAGGAGTCTCTCTGTGTAAAGACTCTATTCGCCTATCACTAacagtctctctctgccctcGGGAATCTGTGTCGTCAGCACCAGGATGTCTTTAATAATCTATATATCTGTGTTAACTCAGGAGTCCTTACAGCAGACAGGATGTCTATCTCCTCTAGTTTAACCAGGAGTCTCTCTGTGTAAAGACTCTATTCACCTATCACTAacagtctctctctgccctcGGGAATCTGTGTCGTCAGCACCAGGATGTCTTTAATAATCTATATATCTGTGTTAACTCAGGAGTCCTTACAGCAGACAGGATGTCTATCTCCTCTAGTTTAACCAGGAGTCTCTCTGTGTAAAGACTCTATTCACCTATCACTAacagtctctctctgccctcGGGAATCTGTGTCGTCAGCACCAGGATGTCTTTAATAATCTATATATCTGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413190 lncRNA downstream 1139 6562531 ~ 6564255 (-) False LOC110524941
TU413198 lncRNA downstream 9902 6480685 ~ 6555492 (-) True G363480
TU413210 lncRNA downstream 70169 6493086 ~ 6495225 (-) True G363491
TU413132 lncRNA downstream 245606 6318686 ~ 6319788 (-) True G363417
TU413118 lncRNA downstream 277782 6286744 ~ 6287612 (-) True G363404
TU413311 lncRNA upstream 25778 6752412 ~ 6752901 (-) False G363581
TU413312 lncRNA upstream 25778 6752412 ~ 6752901 (-) True G363581
TU413352 lncRNA upstream 101443 6828077 ~ 6830288 (-) False G363605
TU413353 lncRNA upstream 101443 6828077 ~ 6830288 (-) False G363605
TU413354 lncRNA upstream 101443 6828077 ~ 6830288 (-) False G363605
XM_021601542.2 mRNA downstream 55377 6505381 ~ 6510017 (-) True LOC110523127
XM_036976661.1 mRNA downstream 81104 6437266 ~ 6484290 (-) True LOC110524940
XM_036976663.1 mRNA downstream 81106 6437266 ~ 6484288 (-) False LOC110524940
XM_036976662.1 mRNA downstream 81107 6437266 ~ 6484287 (-) False LOC110524940
XM_036976664.1 mRNA downstream 81109 6437266 ~ 6484285 (-) False LOC110524940
XM_021601544.2 mRNA upstream 29119 6755753 ~ 6763633 (-) False LOC110523129
XM_036976682.1 mRNA upstream 29119 6755753 ~ 6763633 (-) True LOC110523129
XM_036976681.1 mRNA upstream 48771 6775405 ~ 6821191 (-) False LOC110524942
XM_036976680.1 mRNA upstream 48771 6775405 ~ 6860155 (-) False LOC110524942
XM_036976679.1 mRNA upstream 48771 6775405 ~ 6860173 (-) True LOC110524942
TU413187 other downstream 10679 6543675 ~ 6554715 (-) False G363470
TU413188 other downstream 13720 6543675 ~ 6551674 (-) True G363470
TU411115 other downstream 611143 5945472 ~ 5954251 (-) True LOC110523123
TU410365 other downstream 1483526 5080578 ~ 5081868 (-) False G361170
TU410367 other downstream 1483526 5080578 ~ 5081868 (-) False G361170
TU414159 other upstream 1576633 8303267 ~ 8304183 (-) True G364322
TU414654 other upstream 2320908 9047542 ~ 9050708 (-) False G364754
TU415770 other upstream 2463035 9189669 ~ 9190098 (-) True G365752
TU418958 other upstream 5407418 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 5978932 12705566 ~ 12706092 (-) False G368921

Expression Profile