RNA id: XM_036976694.1


Basic Information

Item Value
RNA id XM_036976694.1
length 2711
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110523137
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7593362 ~ 7722127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGATCACGTGAGCTACAGAAGGGGGTCATTCTCCACATATAGTTTCATTCTAGCGTTTTTATAGCACTCAACTCGATAATGTCTGTGCGCCGTAACCTTGAATGGGTTAAGTGACGATGCGTCTTTTTATGCACGATCAAATTAAGAGTGATACTTTGCGTTGTCTGAAAAGGTGTCCTCTTCAGATTAGCATCATCATATCTCAGTGCTATGTGCTGTAGTAAGAGCCGAGGGGGAGGCTACAGGAGGGACAAGGGTTTTACATCTCAGAAAGGGGTGGAGCTTCATACGGTTCTTCTATTTTTTTGACGCTATAGCGTTCAGTCTATCACGTCCTCCCAATCGCTCAGCACACCACCAAAAACCGTCAACTAACCTAAGACTGACGTGATTTTGACAGGAGTAGACCTACAGGAATTTACGCATTGCTATTTGTTGCGCAATCATACCATTTCTTTGTCAAATTTTTAACTTTTAAAAGTGGCCTACTCGTTGGCTATTTTTCTAGCACGTTATTACCCTTATTTTATCATCGGGGAATCCACTGCAACTTTTGAGAAAAGCAAGTGGTGCCTTTTGATATTGTTATTTTAGCTGTAGCACATTGTGTTGGGTTGCAAGTTGCGCTTGAATTGCTGGTTCTATGGAATCTTGGAAGTTCGTATCAAGACCAGAACAACGAGGATGCCAAGAGGATACGCAGGGAGAATCGGTTGAAGACAACATTCAGACTGAAAACAGCACGGACCTTTTGCATGAATAGGCTACCTGCAAGACACACCTCTATTGCCTAGGCTACTCAGATTAATTAGTGTTAGATAATGAATATCATATTGATTTTAGACTGAAACATAATTTCCATTACATGCTGTGAACTGAAGAAAACTATCAGAGAATATTTTTTATATAGTCGAGTACCGTTCTCGGTAacctatcatttacaattttctGTAACAGATCGCGTTCAATTTTCAATGTGCCATCAGCCGGACAATATTGCTCCTGTATGTGATTGAAACATATACAATCTAATATTTTTGCCTCGCTGAAAAGCGCATATTGATTGTGTTGCGGCATCATGATGGAGGAACAAGCCCGGATAATGCAGGCGCTCAGCGGCGTGACTCTGGCTGGCCATTCGGTACAAGGAGGCATGGGACTACCGCCGCCCCACGGACACGAGGGGACCGATGGGGACGGAAGAAAACAAGATATTGGGGACATTCTTCATCAAATAATGACAATTACCGACCAAAGTCTGGATGAGGCGCAAGCAAAGAAACACGGATTGAACTGTCACAGAATGAAACCCGCGCTCTTCAGCGTTCTCTGCGAAATCAAAGAGAAAACAGGTCTCAGTATCCGGGGTGCTCAGGAGCAGGATCCTCCGGACCCCCAGCTCATgaggctggacaacatgctgctgGCTGAGGGCGTGTCCGGGCCAGAGAAAGGTGGTGGATCTGCGGCTGCCGCGGCAGCAGCCGCTGCAGCGGGGGGCGGAGCCGAGAACTCCATTGAACACTCGGACTACAGGGCCAAGCTGACGCAAATCAGACAGATTTACCACACAGAGCTGGAGAAATATGAGCAGGCGTGTAACGAGTTCACCACCCACGTGATGAACCTGCTGAGGGAGCAGAGCCGCACGCGGCCCATCTCTCCCAAGGAGATCGAGCGCATGGTGGGCATCATCCACCGCAAGTTCAGCTCCATTCAGATGCAGCTTAAACAGAGCACCTGTGAGGCCGTCATGATCCTACGCTCCAGGTTCCTCGACgccagACGGAAAAGGCGgaacttcagcaagcaggccacGGAGATCCTGAACGAGTACTTCTACTCACACCTCAGCAACCCTTACCCGAGCGAGGAGGCCAAGGAGGAACTAGCAAAAAAGTGCAGCATCACTGTGTCCCAGGGTGTGGGAACCACCATCACAGTGTCACAGGTGTCCAATTGGTTCGGCAACAAGAGGATCCGGTACAAGAAGAACATCGGCAAGTTCCAGGAGGAGGCTAACCTCTATGCAGCCAAGACAGCGGTGACGGCAACCCACGCCGTGGCAGCAGCCATCCACAGCAGCCAGGCCAACTCACCCACCACGCCCAACTCTGGTAGGCACACTTGGTGgggGATACCATACGCCATGCTATCAGTCAGACGGTCGGATACAATGATGGGCTACGGCACCCCATGTACAGTCCTCACAGTCTAAATGGTAACGGGGGATGGCACGGTGCACCAACTCCCTCCTCAGTGACGTCCCCAAACGAAGGGCCAGGCAGTGTGCACTCTGATACCTCAAACTGACCACCTCACTGATCGTCTCTTTTCCACCTAATATGCTACCGTGCCCTCGACCAATGTGACTGAACCAAACAGAGGCCATACAGAACCAATCACCTCCCTCGACTGAGTctaacccctcccccctccactccaGACAATGTCGGCCATTTTGTAAAATCCCATCCAATAACCTTCACAGTCAAGACTGATATGATTGGATACAGCTTTTAGCAACATTTTTCTGAACATAAATATATATTAACTGACAGACCGACGAGTTGGGGTTCTGAATGGGAAGTCTAGAGAAGATAACAGTAGATGTATTCAAGTAAAAACTGAAGACCGTGCATCTCTCTCAACCCTCCAGATCTACTCTTTTTGTTCTTCTCTCTTTGGGCCAACTAAGACTGAAGGCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413790 lncRNA downstream 5367 7587631 ~ 7587995 (-) False G363996
TU413791 lncRNA downstream 5367 7587631 ~ 7587995 (-) True G363996
TU413737 lncRNA downstream 94650 7498181 ~ 7498712 (-) True G363944
TU413699 lncRNA downstream 194674 7397739 ~ 7398688 (-) True G363907
TU413619 lncRNA downstream 201115 7388754 ~ 7392247 (-) True G363834
TU413927 lncRNA upstream 77788 7799915 ~ 7805368 (-) False G364109
TU413929 lncRNA upstream 80284 7802411 ~ 7812933 (-) True G364109
TU413935 lncRNA upstream 99913 7822040 ~ 7822497 (-) True G364113
TU413940 lncRNA upstream 117541 7839668 ~ 7845809 (-) True G364118
TU413980 lncRNA upstream 196671 7918798 ~ 7919225 (-) True G364157
XM_021601552.2 mRNA downstream 156443 7394813 ~ 7436919 (-) True mvb12ba
XM_021601551.2 mRNA downstream 156703 7394813 ~ 7436659 (-) False mvb12ba
XM_021601550.2 mRNA downstream 158531 7394813 ~ 7434831 (-) False mvb12ba
XM_036976688.1 mRNA downstream 225565 7272318 ~ 7367797 (-) True LOC110523135
XM_036976687.1 mRNA downstream 225566 7272318 ~ 7367796 (-) False LOC110523135
XM_036976697.1 mRNA upstream 160262 7882389 ~ 8204518 (-) True LOC110524943
XM_021601557.2 mRNA upstream 484364 8206491 ~ 8229279 (-) False LOC110523142
XM_021601558.2 mRNA upstream 486255 8208382 ~ 8229291 (-) True LOC110523142
XM_021601566.2 mRNA upstream 1038704 8760831 ~ 8765948 (-) True hint1
XM_036976535.1 mRNA upstream 1135490 8857617 ~ 8864575 (-) True LOC110524946
TU413195 other downstream 867382 6602005 ~ 6725980 (-) True LOC110524941
TU413187 other downstream 1038647 6543675 ~ 6554715 (-) False G363470
TU413188 other downstream 1041688 6543675 ~ 6551674 (-) True G363470
TU411115 other downstream 1639111 5945472 ~ 5954251 (-) True LOC110523123
TU410367 other downstream 2511494 5080578 ~ 5081868 (-) False G361170
TU414159 other upstream 581140 8303267 ~ 8304183 (-) True G364322
TU414654 other upstream 1325415 9047542 ~ 9050708 (-) False G364754
TU415770 other upstream 1467542 9189669 ~ 9190098 (-) True G365752
TU418958 other upstream 4411925 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 4983439 12705566 ~ 12706092 (-) False G368921

Expression Profile