RNA id: XM_036976706.1



Basic Information


Item Value
RNA id XM_036976706.1
length 4588
RNA type mRNA
GC content 0.52
exon number 9
gene id ror2
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8900752 ~ 9028540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGCTTCACTCCTTGGGGGAGAGTTCCATGCTACGTCATGTGTGAAGAAAGCTGACGTTTTGAACTAGGATACTTCGGGCAACAGTTAAGGAAGGAATAGCGACTCTCGACGGTCTCCCTCTGAATGCACTGGATGAAATTCGCCGTTATTTTTTCAGAACAACTAGCTACTATAAACAGGAATTTCGTTTATTGCACACCGTAGTTTTTATCCCATTGAGTGCTACTTACTACTTCAATTTTTCCCCAGACGAATTCAATCTCCCAAGATAATAATTGAAATACCTGTAGTGCATATCGGATGAGACTTTCCTAGGTCAAGTTTCATAAAACTGCATGAGCACTTTGTGGAACCATGGCATGGATAAAGAGTGGTGTTTTGATCAAGCTCTTCAAAAGCTTCCTTATTGCGGTTGTGTTGGCTCCAAGTTTGAGATCCGCAGCAGAAGCAGATCCTAGTTTATCCCAGCCAGTGGAGTCTGAGGGGCTGGTAGGAGCTCAAAGTGGAGCAGCACCCTCAGCTgaagGTTACTTCCTGGAGTTCCAGGAGCCGGTGAACAATATCACCATCGTGCAGGGCCAGGCGGCCACGCTGCACTGCAAGGTGACGGGAAATCCACGGCCCACCATCCGCTGGCTGAAGAATGACGCGCCAGTGGTCCAGGAGCAAGGACGCATCTCCATCCGCAAAACCGATGCGGGCTCCAAGCTGCGCATCACGGACCTGGACACCACGGACACAGGCTACTACCAGTGCGTGGCCTCCAACCCGGTCAAGGTGATCTCTGGCACTGGCGTGCTCTACGTGAAGCTGGGGCAGTCACCAACACACGAGCCAAATGAAGCGACGCATGAGAAGGGCTTCTGCCAGCCCTACCTGGGCATCGCTTGTGCCCGCTTCATCGGCAACCGCAGCATCTACGTGGAATCTCTGCAGATGCAAGGAGAGAGTGAGAACCGCATCACAGCTGCGTTCACCATGATCGGCACTTCCACGCAGCTCTCGGACCAGTGCTCCAAGTTCGCCATCCCCTCCTTCTGCCACTACGTGTTCCCGCTGTGCGACGAGGGGGCTCGGGGCCCGCGGCGCCGCCAGCTGTGCCGTGATGAGTGCGAGGCACTAGAGAACGAGTTGTGCTACTCCGAGTACACCATCGCCCGCTCCAACCCTCTCATCCTTATGCAGCTGGAACTGCCCAGCTGCCACCTGCTGCCCCACCCGAGCTCGCCCGACGCTGCCAACTGCATGAGGATCGGGGTGCCCCTGGACAAGCTGGGCACATATCACAGCTGCTACAATGGCAGCGGAGCCAACTACAAGGGCACGGTGAGCGTCTCCAAGTCGGGCTACCCCTGCCAGTCGTGGAGTGCCCAGTACCCCCACAGCCACCACCTGTCCCCTGTGGAGTATCCTGAGCTGCGAGGGGGCCACAACTTCTGCCGTAACCCCGGGGGCCAGATGGAGGGTCCCTGGTGCTTCACCCTTGACCAGCAGGTCAGAGTGGACCTGTGCGACGTCCGCCCCTGCACACCGCCAGAGAACCTGAAGAAGGAGATCCTGTACATCTTGATCCCCAGCATCGCCATCCCACTGGTCATCGCCTGCCTTTTCTTCCTGGTCTGCATGTGCCGCAACAAGCAGAAGGAGCCCACTGACACTCCCCCTCGCCGTCAGCTCACTGCCTCACCCAGCCAGGACATGGAGCTGCCACTGCTCAACCAGCACAAGCACCAGGCAAAGCTGCGGGAGATCAACCTCTCAGCAGTGCGCTTCATGGAGGAGCTGGGCGAGGACCGCTTCGGCAAGGTCTACAAGGGCCACCTATACGGCACGGCGCCCGGCGAGCAGACCCAGGTGGTGGCCATCAAGACGGTCAAGGACAAGGACGAGGGCACTCTCCGCGAGGAGTTCCGCCACGAGGCCATGTTGCGCTCGCGCCTCCAGCACCCCAACATCGTGTGCCTGCTGGGCGTGGTGACCAAAGAGCAACCCATCAGCATGATCTTCAGCTACTCGGGCCTGGGCGATCTACACGAGTTTCTGGTCATGCGCTCGCCACACTCAGATGTGGGCAGCTCGGATGACGACAAGACGGTGAAGTCCACGCTGGAGCAGGCCGACTTCCTGCACGTGGTGACACAGGTGGCCGCCGGCATGGAGTATCTGTCCAGCCACCACGTGGTACACAAGGATCTGGCTACCCGCAACATCTTGGTCTGCGACAAGCTCAACGTCAAGATCCTGGACCTGGGCCTCTTCCGGGAGGTCTACTCAGCCGACTACTACAAGCTGATGGGCACCAGCCCCTTCCCCATCCGCTGGATGTCCCCGGAGGCAATCATGTACGGGAAGTTTTCTACCGACTCGGACATCTGGTCCTACGGTGTGGTGCTGTGGGAGATCTTCAGCTACGGCCTGCAGCCCTACTGCGGCTACTCCAACCAGGACGTCATCGAGATGGTGCGCAACCGTCAGGTGCTGGCCTGTCCCGACGACTGCCCCGCCTGGATCTACACACTCATGCTAGAGTGCTGGAGCGAGTTCCCGGCACGCCGCCCACGCTTTAAGGACATCCACACTCGCCTGCGCACCTGGGAGAGCCTGTCCAACTACAACAGCTCGGCTCAGACCTCGGGCACCAGCAACACCACCCAGACCAGCTCCCTGAGCACCAGCCCCATCAGTAACATCAGCATGAGTGCAACCAATGCCGCGCGCTACGCCAACCCCAAGAAGAACTCGCCCTTCCCCCAGCCCCAGTTCATGCCCATGAAGGGCCAGATGCACCGGCCCATGCTGCAGCAGCACCCGCAGCAGCTCTACATCCCGGTCAACGGCTATCAGCCCATGCCCGCGTACCCATACATGCAGAACTTCTACCCCATGCAGATGTCCATGCACCAAATGGCGCACCAGCAGATGGCGCACCACCCGCCGCAGATGGTGGCCAAGGCAGGATCGCACCACAGCGGCAGCGGCTCCACCTCCACGGGTTACGTCACCACGGCGCCCTCCAACGCCTCAGGTACGGAGCGAGCTGCCTTGCTCAGCGATAGCCCCAAGGCAAACATGGAGGACATGGCGGACGGTGCGTCCCAGAATGGGCTGGGGCATGGAGAGGACACAACAGTCCCCGAAACTGAATTACTGGGTGATAATGACCTGCCACAGACTGACGACATGGAGATGCACTCGGAGGCATAGGGGGACCGAAAGTCTGGAGGACTGGGGAACAAACTAGAGCTGAAATGCTCTGTGAACTTAATTTGTTTGAGTTCAATTGAGCGCCATGAATAAGTGAAGGGAACGCATTGGAAAAACAGTGACTGAATGTTATTTATGGGTTGTTTAGTTGTCACTGGTGCATCCGAATGATATCAGTGATCTCAGGTTCTTCCCTGCAGGACCCCTTTAGCGAAGTGTCATAAAACGAACCCTGAACCCTGAAAGCCGCTCGACAGAAAACGTCAATGAAGAGAACCATTTTCACCATTTGGGCTGCGGGTGCGACCGGCATGGACAGTGTTCTCACTTTGTTGCAAAGCCATTCAGAAGAATTTAGGTTCTTACTGTTTCTGTGCAACACAAAGTCTTTTCTTTTCGACAAAGGATTCCTGAAGTTGCCTTGTGTTAATGTTTTCAAAATGTTCAATTGTATAGTAGTAGGCCTACTCCAGAGACGATTTTTACTGTGGTTTTACGTGAGACAGGAGTGTGTCAATTTGGCAGAATGTATGATGATGAATGGACAGAAACATTTATTGGGAGTTTACagggcaattccaccacttttcaacctccaTTTTCATTGTCTTAATATGTCTATATATATGTTAAAATGGCACATGACATCATCAAAAGTTCAAATGTTTAAAAAGTGATTTTTAGAAACTCGTTGCCGATTTTGAAAATCGACGTCTTACTTTTAATCAAAAAAAAAAATCGTACTTTTAATCCATACCATGTTatgtcacagagaagcatttGTTAGgaccacagatcatagaaatgCATGCAGTATGGAGATACTGGTAATGTGCTGgatataatgaatatgaggttgaaaagtggcagAATTTCCCTATTAAAACCTTCCTTAGATACAGTATTTTGGAATAAAACTTTATCAAATAATTGTTATACTCAGTAGATTGATATTGCTCATGGAACATGGATGTGTCACTACTCAACATACATCATGTGATAAGACAAGAAAGAACTGTACATGATAAGTATATTAGCGTGGGAATTGTTGATGTTTAGCCTTATTCCGTTTGAGCCTTATGCTCATATTCTCTTTCTTATGGGCTTGTATGTTACACGTTGCTCAACTTCAACTTTGATACCCTGTTTTACAGATTTGTAATTtatgtaattattattttttttaaacacaatttTTGTTTTATCATGCGTTGTTGGCAAAAAAGGTGTTTAGTCTTGAGGTTAATACTTAAATGTCATTGCAACCAGatattagcttttttttttttttttctccataaagGTGTAATAACAAATGTTAACCATATATTGTATACATCCAGCCACATGGAGTAGCCAATAAAGTGATACATTATAAAGACA

Function


GO: NA

KEGG:

id description
K05123 ROR2, NTRKR2; receptor tyrosine kinase-like orphan receptor 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU412731 lncRNA upstream 51646 8846211 ~ 8849107 (+) True cdc42se2
TU412781 lncRNA upstream 66059 8833957 ~ 8834694 (+) True G363108
TU412726 lncRNA upstream 135111 8760831 ~ 8765642 (+) True G363054
TU412725 lncRNA upstream 139475 8760831 ~ 8761278 (+) False G363054
TU412712 lncRNA upstream 154368 8746161 ~ 8746385 (+) True G363042
TU412929 lncRNA downstream 65371 9093911 ~ 9094504 (+) True G363249
TU412903 lncRNA downstream 71727 9100267 ~ 9100945 (+) True G363223
TU412939 lncRNA downstream 83583 9112123 ~ 9112623 (+) True G363258
TU412944 lncRNA downstream 86663 9115203 ~ 9115428 (+) True G363262
TU412954 lncRNA downstream 103045 9131585 ~ 9131886 (+) True G363270
XM_036976704.1 mRNA upstream 524 8881054 ~ 8900229 (+) False sptlc1
XM_036976703.1 mRNA upstream 524 8881063 ~ 8900229 (+) True sptlc1
XM_036976700.1 mRNA upstream 51765 8775134 ~ 8848988 (+) False cdc42se2
XM_036976701.1 mRNA upstream 51765 8775134 ~ 8848988 (+) False cdc42se2
XM_021601567.2 mRNA upstream 128364 8769784 ~ 8772389 (+) True lyrm7
XM_021601575.2 mRNA downstream 12509 9041049 ~ 9046725 (+) False nfil3
XM_021601577.2 mRNA downstream 12525 9041065 ~ 9046725 (+) True nfil3
XM_036976707.1 mRNA downstream 20184 9048724 ~ 9099002 (+) True auh
XM_021601580.2 mRNA downstream 170375 9198915 ~ 9203854 (+) True LOC110523155
XM_021601581.2 mRNA downstream 258517 9287057 ~ 9303171 (+) False pdzph1
TU412732 other upstream 54637 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 981188 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1208239 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1710934 7185926 ~ 7189819 (+) False G362297
TU414760 other downstream 200298 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 820163 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1948142 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2397102 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2849789 11878329 ~ 11880035 (+) True G367684

Expression Profile