RNA id: XM_036976712.1


Basic Information

Item Value
RNA id XM_036976712.1
length 4288
RNA type mRNA
GC content 0.48
exon number 12
gene id pdzph1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9287057 ~ 9303171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGGCGGATCCTTTAGAGAAATGGGGTTAATCCTGTCATGGATGGCTGAGTCACGCCCAGCCCGTGCACCCACACCTTCACTATTAAGCCTGCCACACTGTTTGGCCAATCGGAGCAGGTGAGGATTACTGTGGTCTCGTCTATGTAACCACAGCTAATGGACAAGAGCCAAGAGGCTCCATCTTGGAATGAATCCCACACATTGTGATAAGAGAGTGCCTCTCAATGCgtttttcaaaaacaaaacaaaagtaaCAGTTTGGTTTGCCAGGATGATATCACTGAGAAAGGAGAAATTCAATCATTACGCAAAGAAAATATTTTGTCAGACTCTGATGAAGAGGGAAAATACAGTGAGATTCCAAGCAAAGAGAAAAAAGTCAGGCGAGACAGTCAAGGGGAGTCCTCTCGAAACAAAAGGCCACCTAGCATCGCAAAGCAAGAGAACATAGACAGGGGGGTGAAATTCACAACTTTGGTAACCATTGACAATTTGCAACCGTCATCTTCAAAAATCATCTTTCAGCACTCTCGTATTGGCTCGAACATGAAGTTTGAAATTCAAGAAATTCTACACTCCGATAACTCAGGGATCAAGACAGTATATGCGTTCGAAAGTCAACAGGAGGCTACCGGAGAGCCTTGTGTCCAGAGTCAATGTGAGAAGAGACTCGGTCCAAATAATGATTTAATTCAGCAGTCATGGACTCTAAACCCAAATGTAAACATCACAGTCCACAGTCAAAACAGGAAGCACAACTACGAATTTAGCGTTCCAGAAAGCAGCAAGGATGCCGAGTTCACAGAAAGACATAGCATTGCCTCAAGGTGTTGTGGGGAATTGGCCTGCCGCAAAAGCTGCTGTGATGATCAATTTGCTTTTCACCGTTCGCCCAGCAACAATGACACCGACTTCACATTGGCAGGTGGGTCCTCCAGCCCACCCCCTTTGTCTGACTTCTGGAAAAGCACAGATGCACTGTGTGACATTCCCCCACCTTGTGAGTTTTCCGACCATAAATATGAATCCCTGGCAGACCTTACCGAAGACATAGCTTCCTGTCAGATTGGAGCTTGTTGTACTATGGACAAGCAGCAATGGGTATTCAGTCCACCACCCTCCATGAGGCACCATAAAGACTCTGGTTGCCCCTACTCACTTGATGGTGAAGACAGTGCCCATTTGGCATCTTTCTTCGACAGCGTATCGGAATCAGACAACTATGAACCCATGTTCATGAGACCACCATTGTCAGTGAACAGGTCCAGTTACACCAAAGACTTCATCCAAAACCACGAGATGAAGACCCAGATGCGTAACAATAGCATAGCTACCGTAGAATGCAAAACCTGCTTGTCGTCCAGTTATCTACAAAAGCCGACGAAGAGGCGGCGGACTTTCCCCGGGGTGAAAGAAGAACCAAGTCAAATGCAGGAGGGCCTACCTTCGTGGGAGGGAAGAGAGTCTTTTTCGTCTGGCACCATCTCCTCTTACATTATGGAGTCCCTTCCGCTTCAAGCAGAGAGACTAAGCAGACTGACAGCAGACCACCAGGAAGATGAGAGGCTTTGTCCCTTTAGTGCATTGAGACGTAAATCCTCCCAAAGCAGCTACAGTTACAGACCCAGCTCCAGCAATGCAAACAGCCACCTCGAGCCACAGCAACAACTGATCAATCCGTCATATGCATCTATGTCCGAGGAGGCTGTAGAGGAGGTCTTCCAGTTACCAGAGCCAAAGCACCTACCATGTGAAGAATCCAGAGGACCCGACCTGGACTTTGGAGGGAATGCATTGGCGGACATGGCTTTCGGAGTGGAGCAGATCGAGGTGGCAGAGAGCGGCTTTGATGAAGACATGGGGGAAGTGGAGGACCACAGCCTAGATCCCACGATGGAGGAGCTCACTCAGAGGGACCTGCTCATTCAGGTCTTCCCTACCTCCCTTTCCAAACTGTCATCCCAAGAGAATTCAGTTCCCAATCTTCAATCCATGCGGCGAAGAGGATCAGTCATGGCCATAACAACAGGGAGCACTGAGCAAAGGATCTTGCAGAGTGTCTCCAAACTAGCAGAGAGCGCAGCACTGAATAGTCCCCACTTGGACACCTCCAACGTAATCCCAGAGGCACGGTCTGTGTTCCCCGTACTGAACATGGAGATGGACTCAGAAATCGCAAGTAAAGCTACAGAGGAGGTTAGACTAACGCCGAAAAGGTCTCAAACTGTAAGAGCTAGCATCTCCAGCCCTACTCTTTCACAGATCGAGGAGGGGAAAGAACCTCCTCCAAAATACAAGATTGTAGAGGATTCAGGCATGGAAATTGCAGAGGCACCCAGTCCAGATCATGAATCTCAAGACCAAGAGACAGAAAGCAATTGGAATCAATATCAGACAGATTCTACAGCGGTAAAACAAAGTGTGTCCAAATCCTCCTTAGAGGTCAAGGACAACGGCCCCGAGCACTGGGCTAAGAGACGGAATCTCTTCAAGGACAGCAAgcaatggagctctataggaggaAGCTCCCTAACCAGCAGCATCAATGAGGAGTCAGGAATTTCAGAAGACAGTCGTTCTGTTGACATGGCAACAAGGGACCTTGGAGATAAGGGTTTCTACACAGAAACCTTCCACTGTGCCTCATGGATTTACAGTGGAGACGAAGTCAGTCCGACTGCTGGGCCAGTTCCTCCTGGTCTCCAACCTCGAACTGTCACAATTCGTGAGAGGACGGTAAAGATTTGGAAAGGAATGGGAGAGTACCCCTGGGGGTTCAGAATACAGTTTTCCAAACCTATTGTGGTCACAGAGGTCGACACAAATGGAGCAGCCGAGGAGGCGGGGCTATTGGTGGGAGATTTCGTCATGGCCGTCAATGGGATCGATGTCACCAGTATCCCCCACTCTGAGGCAGCTGACCTGGCAAGACAAGGCCCAGACCTCCTGACTATGACCATTGGCTCAGACATCGGTCGAGGCCCCAACACCCCCAGACCTACCTGCCGAGGCTACCTCCATAAACGCACCCAGTCTGGCCTGATCAAGGGTTGGAGAAGGAGGTGGTTCGTGCTAAGACATGACTGCTGTCTGTACTACTACAGGCATAAAAAGGATGAGGGGAGGAAGCGAGCTCTGTCATCTTTTAAGCTAGAGGGAGCAGATGTTGGAGGGGACCCCTCCCTGGGGAAACCCTTTGTGTTCAAGTGCTGCCCCCTGTCTGCCAACCGAGTGTACTACTTCTCCGCTACATCCAACCTGGAGATGAAAAGGTGGTTGGATGCCATGGACAGAGCTGTTCATCCTGTAACACAGAATCACGTGTGGGTGGATGTGACTCGCCACAACGCCAGCCTCCCCCCACTGGCCGTGAAGAACCCAGAGTGTCTGGGCCTGCTTCACCAGATAGACAGGAATAACAAGGACACGTGGGTGCAGCACTACTGTACACTGAAGGACGGGTGCCTATACTTCTACGCAGGCATCCGCTCAACGCACGCTCTGGGGGGGATCTACTTACATGGGTACACTGTGAGGGAACAGTCCTTGGGATCCAAGAAATCCACCATTGAACTGAAACCCCCTTCGGAAGAGTTCAAAACCTTCTATCTCTGTGCTGAAAACCCCATGGAAAACAAACGATGGATCTTGTCTATAAAAGCATCCGCAAAGAAATGGCTACCATACCATCAGGCCGTTCAGGACTACATGAATCGACCACCAGAGGAGACCAGAATGTGAGCTCGATGGATACTCCTCGCATCACAAACAACCTTTACTGTTCTAGCTTCTGGTTTGGTTTAACCAAAAGCATGTTAAAGGATCACTTTACTCAAAAACTTGTTATGATGCAAaacatatcatcatcatcacagttTTTACTCTGTACTGAAAACTTGACTACTGACATGCACAATGGAATTTTGGGGGGATTGTATTAACAATGAACTTAtgatcaaaatactaaaatagtTTTGGAGTGACCTATCCCTTTAATATTGGTTATGTTTGACGTTCCCTTGAAGGATTCCATGTAAAGCTGAAAATTGAGTATTTCAATGCAGTTTAACTTCAGGTCGCTTTACTCTACCCTGAGTGTCAGTCTGTTTAAGTTATCATGCAAGACGACAaacacacagatctgggaccagtcttaCCCTTGTTGGACGACCAGCTGTTCAAGGCATTTACAGTATGTTCACTTCAGAAAAATTATTACTGGCACTTTGGGAAAACTACTCTTTAACTAACAGTGTACTTTGAAGATGTCCAtagtctttatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414791 lncRNA upstream 2896 9286240 ~ 9286857 (+) True G364881
TU414790 lncRNA upstream 3643 9285764 ~ 9286110 (+) True G364880
TU414789 lncRNA upstream 4069 9285274 ~ 9285684 (+) True G364879
TU414786 lncRNA upstream 9225 9280293 ~ 9280528 (+) True G364876
TU414781 lncRNA upstream 23027 9266317 ~ 9266726 (+) True G364871
TU414793 lncRNA downstream 471 9303642 ~ 9319132 (+) False G364882
TU414796 lncRNA downstream 471 9303642 ~ 9333489 (+) False G364882
TU414797 lncRNA downstream 471 9303642 ~ 9331456 (+) False G364882
TU414798 lncRNA downstream 471 9303642 ~ 9333489 (+) False G364882
TU414800 lncRNA downstream 471 9303642 ~ 9333489 (+) False G364882
XM_021601580.2 mRNA upstream 85899 9198915 ~ 9203854 (+) True LOC110523155
XM_036976707.1 mRNA upstream 190751 9048724 ~ 9099002 (+) True auh
XM_021601575.2 mRNA upstream 243028 9041049 ~ 9046725 (+) False nfil3
XM_021601577.2 mRNA upstream 243028 9041065 ~ 9046725 (+) True nfil3
trnas-uga mRNA upstream 346608 8943072 ~ 8943145 (+) True trnas-uga
NM_001124216.1 mRNA downstream 356641 9659812 ~ 9677491 (+) True st8sia4
XM_021601309.2 mRNA downstream 387338 9690509 ~ 9691996 (+) True LOC110522837
XM_036976723.1 mRNA downstream 390877 9694048 ~ 9731133 (+) True chd1
XR_005051967.1 mRNA downstream 408580 9711751 ~ 9711969 (+) True LOC118964774
XR_005051972.1 mRNA downstream 422267 9725438 ~ 9725565 (+) True LOC118964779
TU414760 other upstream 60522 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 443637 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1370188 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1597239 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2099934 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 545532 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1673511 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2122471 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2575158 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3805525 13108696 ~ 13109134 (+) True G368440

Expression Profile