RNA id: XM_036976728.1


Basic Information

Item Value
RNA id XM_036976728.1
length 3081
RNA type mRNA
GC content 0.45
exon number 12
gene id ca9
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9810724 ~ 9834173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcacaagtgtgtgtgtctgaccgaCTGTGCCTGTGTGTGGGTCTAGTCcagcagaaagagagggaggtgggggagaacAGGGGATGTACCAGGCACCTTGAGCAGTTCCTAGGCTCCTGATTGGTGCCTGGGCTGTCCTCTGAGTTGCCTTTAAAAAGCCCAGCCCAGATGTCCTGGCCCTGGATCCAGTAacggtgaaggagaggagacacaggtCAATGAGTGAAGAGAGAGTATGAAGACTGAAGCTGGGCATATTGAAGACAACTTTACTCCTCTTACCTTCTTGCTAAGTGTGCTTTGTGGAAACGTGCTCTGTTGAAACGTGCTCTGTTGCCTAGCTGAACATTTCTCTTCTCAGGACAAAATGACTACTGAGTGTCCGGTTGATAACTAGCTGGGTGCTGTCTCACTAAAGACAGTTTGACTGAACACAGACGGACAGTAGACTTCCTTACATAGTCTATCTGCAGActacctgagagacagacagtagacttcATTACATAGTCTAACTGCAGACTacctaacagacagacagtaaactTCATGACATAGTTTAACTGTCGACTGAATACCTGACAGACCATTTTCAGAGAACTGCCACAGTGCTCATTTGACACAGGAGATCCTAACAATACCTTGACCAGATGATTCTCAAGAtcttcctcaccctcctcttcctccatggtTTGGTGCTAAAtgcatcctcctcttcctcatcctccgaAGAGGAGGATGGCGGGAGCAGTGAGAAGGACAGCGGGGAGCATCATCCTAAAGGTGTCCCTCATGGTGGACACTGGGGCTACGAAGATCAAGCTGCCTGGTCCTCTGAGTTCTCACACTGCAGTGGAAAATCCCAGTCTCCCATTGACATTGATACCAGGAGAGCCCTCTATGACCGCAGCCTGCCACCCATAACTCTGGAGGACTATGATCTGACAGACAGCTCAGCATTGACACTGTTGAACAACGGCCATACCTtgcaGCTGGTCCTGCCCAACACCATGCGCATCACCAGTGGGTTTGACAACGAGTTCCGGGCCGCCCAACTGCATTTCCACTGGGGGACCAAAGAGGTGCCAGGATCTGAACACACCATAGATAACGTCCACTTCCCTGCAGAGATCCACATAGTTCATTACAACTCTAAATATGCAAATCTGTCCGAGGCAGCCAGCAAATCAGATGGCCTGGCTGTATTAGGGGGCTTCATCGGGATTGGTCTTCATGAGAATGACAACTATGAAAAGATCCTGTCTGCGCTCGCTGATGTCAGCATCGAAGAGTCTAACACTGAGATCCCTGCCTTCAATGTCCGTCATCTTTTGCCAAACAAGCTGGAGCGCTTCTACAGATATAATGGCTCCCTTACCACTCCTCCCTGCTTCCAAACAGTCAACTGGACAATGTTCAATGATACCATCACAGTGTCCAGGAGGCAGTTGGCTGCTCTGGAGGACACACTGAAAGCAGGCCAACACCAGCACCTGACCAAGAATTTCAGAGCACCTCAGCTTCTACATGGGAGACACGTCCTTGCCTCGTTCACAGACACTCCCACCATAGTCGTTGCAGGACATCCAAGTATCTCTATCAACACCTTGTCGGAGACTGATGCCTCTAACAGTGAAGGGCCATCAACTGGGCCATCTGAGGTCCTAGCAAGAGGAGATATCTTGGCCATAGCCTTCGGAGCTCTCTTTGCCGTCACTTTGCTGCTATTCACGCTCTATGCATACCAACAGCGTAAAAAATACTCTAGGTAGTATCAAAAAGGACTCCAGGCAGAACGTTATCTACAAACCAGCAACTAAAGAAGAGGCATAGATGTCACTGGAAAGGAGTCTTATTCAGATTTTATATTCAAACTATTTTCAATAGGAATTAAAGAGATTATCCAGTACTTTTGTAGACTTTTTTAGCCTAGAACTAGGTACTTTTGTagactttttagccagtagttctgaaagtagctctcacaagccaaaagtggtccctggAAATTGCATACTATATCAGATTGTGTGCAGATACTGTATGAGCAGCACGtcatcgctctctcgctcgctctacTGTGGCGCATGATGtgcctcttgctagctgtcactatTATGACAAGTGGTTGAAGCTCATTAGTTGAAATCAAACTGGAAAATGGAGGGAAAATGGACAAGTACAGCTTCCCGAAAAACAGTCTCTTTCAAGCTAGTGATTTCATGGCTAATTACAGTAAGACAGTAATTCTGATAATAGATTATTCATGTATGAActgcacattgacacatccagcccaaagtggGATGTTTAAAAAATACTTATTCGTTGCCAATGTTTCGGAGGCGGTGTCTTTAAAAGAGTTATGATCGAGAATTCATATTGCTCAAACCAAGTTTAACATTTGCTCAGAATGATTGTTTTCGTCTTTGTTACTAATGCAAAGTGGTTTAAGTATGTAATAcgagtcagtggaggctgctgggtggaggacggctcataataataccTGGAATggcgcgaatggaatggcatcaaacacatggaaaccgtggaaaccatgtgtttgatgttgttgatcACTTTCCACCTATTCTGCTCCAGCCGTTACTACgtgcctgtcctccccaatgaaggtgccaccaacctcctgtgatgtgtgTATATGGTACGTGTAGAAGAACAGCTGTAGTTACCACCTGAGTAAGAATGTATACAATGTGTTCTATTTAATTGTGGTGGCAAAATGATAAATGTTCATGAACTTCAATACAATTGACTTACTGTCGAAGAAAGTCAAATCACTTTTTCCCAGGGTGTTCACTTCGTTACAAGTACTAGACCTGCAGATAAAAGTGTTATGCTGTATCGTGTGTGTTGGATATCATGCAGGAAGTGTTTTATATGAGTGttgtattgttattactataTATCCTCAAATGTATGGACACTTGTCACTAAAACCGTTAAGTTGTTTTGTAGTTTACctctcaacctctccacaatggtgTATACTGATGTGCAATTGGACCTTGAAATGTACAataaatgtgttatattcttaTAAAGTCTGTCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415124 lncRNA upstream 7889 9802618 ~ 9802835 (+) True G365175
TU415025 lncRNA upstream 35147 9774865 ~ 9775577 (+) True G365077
TU415042 lncRNA upstream 123762 9635188 ~ 9686962 (+) True G365093
TU415058 lncRNA upstream 129155 9678974 ~ 9681569 (+) True G365109
TU414879 lncRNA upstream 295585 9511683 ~ 9515139 (+) True G364942
TU415143 lncRNA downstream 6402 9840575 ~ 9840959 (+) True G365190
TU415147 lncRNA downstream 12019 9846192 ~ 9846403 (+) True G365194
TU415148 lncRNA downstream 12701 9846874 ~ 9847079 (+) True G365195
TU415149 lncRNA downstream 13907 9848080 ~ 9848292 (+) True G365196
TU415166 lncRNA downstream 16970 9851143 ~ 9851352 (+) True G365202
XM_036976725.1 mRNA upstream 12901 9782455 ~ 9797823 (+) False dcp2
XM_036976724.1 mRNA upstream 12901 9782457 ~ 9797823 (+) True dcp2
XM_036976723.1 mRNA upstream 79591 9694048 ~ 9731133 (+) True chd1
XR_005051972.1 mRNA upstream 85159 9725438 ~ 9725565 (+) True LOC118964779
XR_005051967.1 mRNA upstream 98755 9711751 ~ 9711969 (+) True LOC118964774
XM_036976730.1 mRNA downstream 36454 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA downstream 36455 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA downstream 36458 9870631 ~ 9874229 (+) True LOC110523166
XM_036976746.1 mRNA downstream 274699 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 274699 10108872 ~ 10124536 (+) False LOC110523169
TU414760 other upstream 581493 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 964608 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1891159 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2118210 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2620905 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 14530 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1142509 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1591469 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2044156 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3274523 13108696 ~ 13109134 (+) True G368440

Expression Profile