RNA id: XM_021601607.2


Basic Information

Item Value
RNA id XM_021601607.2
length 2671
RNA type mRNA
GC content 0.41
exon number 7
gene id zgc:114200
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9857567 ~ 9869211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAACACGGAAGTACAAAATTCGACAAACAAAAAGCTTAGCTAGGAAATGAGAGCATGGAGGGATCTAAATATTAAAATATCGATCAATAAAATCGCTGAACGAAAAGGAAATATAGCTACTTAAAGATTTATGCTAAAGAAAATAATTAAATTATTGTAAATGTATTGCTAGATAGCAATGGATATCGGTATGAAGTTTATCTTCTGCACTGATAGCTAACGTTAATTTTAGCTAGAGAAACATAGCCCGCTATTTTGAAACAGACTTGCTTTTTCAATTTCTAGAGACTAACTAGCAAACCAGTGGGCGTTTATCTTATGATAATTATCATTTCACCTCGTTATTAATCCTCTAACGTTAGcgtgctgatttttttttttttttaacgggCTAGCCAAGAAGAACAAGTTTAGATAGTGGCAATGACTGCTGCAGTGTTTTTTGGGTGTGCGTTCATTGCATTTGGGCCAGCGTTTTCCCTATTTATTTTCACTATCGCCAAAGACCCATTGCGAGTCATCATTCTAATTGCAGGggcCTTCTTCTGGCTGGTGTCCTTACTGCTGTCCTCTCTGGTGTGGTTCATAGCCACGAAGGCCACCAATGCCCAGGACCTGACCCTGCAGAAAAACCTGCTCATATTTGGCAGTATTTTCTCAGTCATACTGCAGGAGGTGTTCCGCTTTGCATACTACAGGCTGCTCAGGAAGGCAAATGAAGGTCTGGCAGCCATCAGTGAAGAAGACGGCCCCCCCCTTTCAGTCCGGGAAATGGCCTATGTGGCTGGACTGGGCTTTGGCATCATGAGCGGAGCCTTCTCCATGATCaacactctctctgactctctgggCCCAGGGACAGTGGGCATGTTTGGAGACTCCCAGTACTACTTCATCACCTcagCCCTGATGACCCTGGCGCTGACGATGCTCCACACCTTCTGGGGGGTGGTGTTCTTTGAGGGCTGTGAGAGGAAGAGATGGTGGGTGATCGCTGTGGTGCTCTGTGTCCACCTGATGGTCTTCAGCCTGTCTCTGTTGAACCCGTTCTACGTGGGCAGCATTCTCCCGGTCTACGCCATCATGCTGCTGATGGCCGTCTGGGCCTTCTTCTCCTCCGGTGGCTCCCTGCACAACATCACTCTTCTCTGGACGTGTAGGAAAAGTAATACGGAGACGTCGTCATAATTCACATTCCATGTTGATCTCTGAGGTCGAAGGGCAATAGGAGCTTCTGTCGCTGCAGTGCTGTGTACAAACCAAAGCAGCCAATCAAGAGACGACACAGTCTCCACATCAACCAATCTCCACATAATATGGATGGGCTGAATCAGAGCCCAGAAATCAGCACTTCACTGACCAATAGAGCTGACCAAGGGAAATCCttcatactgtatatagcctgaatgacactagtttacacacacttaggcaTGTGTAAGCTTTTTTTCAATGCAAGGaaacaacctttttttttttcGTTCTTTGTCTCTTCGCAGATTTGGCTTTTGTATGGACTTTTAATCAATCCACTCCCTTGCGTCAATTATTGATCTTTGGTTTACtgaattattataataattttttaaagaatgaTCATTTGTTAGTTAATGTAATGTGAAGGGCAGAGCTGCACAAATCGaatgttatttgtcatgtgccgaatacaacagtgaaatgctgacttacaagcccttaaccaacaatccaGTTTGAagaaaaataagtttaaaaaaaaaatagctaagtaaaacaataagaaataaaagtaacaaataataaaagatcagcagtaaaaataacagtcgcaaggctatatacagggggtaccgttacagagtcaatgtgctggggcaccggttagtcaaggtaatctGTAcaggtaggtagagttaaagtgcaACAGACtgttggctctggtcaaatgaagaTTCTTCACCAGGACTTTTTTTGTACCCTCAACCTCAtttcaatgttttgttttttttaaattaaaattacGAGCCACCAtttaaattacttttttttttatatatatatatatatatatatatatatatatatatataattatgtaATCAATGGACAATGTTAACTTTTTTTATTTGGTCAATGACAGTCttacaaatcagtctgacagtatTTTTGACTGTATTTTAATCTGAAAACCATATGGTTTGAATTGACTGAAATGTATTAGGAAATGCAGAAGATCATCAGGCAATAATGTATGATGATCTGTGTAGAAAAGAACCTTGGAAGAAAACTGATTTTAAGCCAGGTTCTATGAACCAATCACCAATTATCGATCGTGACTCCCATTTTCAAATCCCCTAGTTTGGAAAACCCtattatacacacatacaacGGTATGCAACATCACTATATTATGCATTATCTGCCCTGGCAGACACTGCCATGTGTAGGACACATGtacacatcacaggaggttggtggcaccttatttggggaggacgggctaGTGGTAATGGCTAACGCTGAATCAGTGGAATGTTTTCAGATACATCAAACTAAatgtttgatgccgttccatttaGCTCCATTCCAGACaatatgagccatcctcccctcagcagcccccaCTGGTACATATTATGTAAGgtatttttatgtttttattatgcAAATAAAATGCTAATGTTCTTGA

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06172 APH1; gamma-secretase subunit APH-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416160 lncRNA downstream 7782 9849459 ~ 9849785 (-) True G366097
TU416140 lncRNA downstream 46065 9810924 ~ 9811502 (-) True G366077
TU416103 lncRNA downstream 100852 9755440 ~ 9756715 (-) True LOC110522838
TU416080 lncRNA downstream 134654 9721692 ~ 9722913 (-) False G366019
TU416081 lncRNA downstream 134654 9721692 ~ 9722913 (-) False G366019
TU416171 lncRNA upstream 1207 9870418 ~ 9870643 (-) True G366107
TU416187 lncRNA upstream 48724 9917935 ~ 9918310 (-) True G366123
TU416188 lncRNA upstream 49631 9918842 ~ 9920142 (-) True G366124
TU416206 lncRNA upstream 101751 9970962 ~ 9971551 (-) True G366140
TU416271 lncRNA upstream 234799 10104010 ~ 10156606 (-) True G366199
NM_001165180.1 mRNA downstream 82010 9762915 ~ 9775557 (-) True reep5
XR_002473370.2 mRNA downstream 100582 9755287 ~ 9756985 (-) False LOC110522838
XR_005051937.1 mRNA downstream 232828 9623770 ~ 9624739 (-) True LOC118964744
XM_036976720.1 mRNA downstream 247017 9454461 ~ 9610550 (-) True pam
XM_036976721.1 mRNA downstream 247040 9454461 ~ 9610527 (-) False pam
XM_021601617.2 mRNA upstream 10038 9879249 ~ 9899368 (-) False tpm2
XM_021601619.2 mRNA upstream 10038 9879249 ~ 9899369 (-) False tpm2
XM_021601612.2 mRNA upstream 10038 9879249 ~ 9911220 (-) False tpm2
XM_021601615.2 mRNA upstream 10038 9879249 ~ 9911220 (-) False tpm2
XM_036976732.1 mRNA upstream 10038 9879249 ~ 9911220 (-) False tpm2
TU415770 other downstream 667469 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 806859 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 1553384 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 3131587 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 3305893 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 2264841 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 2836355 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 2836355 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 4337979 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 4558127 14427338 ~ 14428591 (-) True G370635

Expression Profile