RNA id: XM_021601608.2


Basic Information

Item Value
RNA id XM_021601608.2
length 1737
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110523166
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9870627 ~ 9874229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacgacaaccgccgagcgccacccgaacgggaaggggagccacctttggtcggactcgtgacaataGGGAAAGTGGGAAAGTCAACACTGACCATGATCCACTCGAAATTCATCACCAAACCGGGAGGTGGCAGAGACCATTATAGAGAAACAAGTTTGACGGATTCAGATAAAATGGCTTGCGAATCGACTCTCCCAGAGGAGGATCTATCCTGTCCTGTGTGCTGTGACATCTTCAAGGATCCTGTTCTCCTGTCTTGTAGCCACAGCTTCTGTAAAGCCTGTCTGCAGGAATTCTGGAAAGAGAAGGAATGGCAGGAGTGTCCAGTTTGCAGGAGAAGATCGTCAAGGTCTGAGCCTCCCAATAACCGGGCTCTTAAGAACCTATGTGAGGCCTTCTTACAGGAGAGGCGTCAGAGAGCTTCAGCAGGGTCTGCGGTGCTCTGCAGTCTGCATGGAGAGAAACTCAAGCTCTTCTGTCTGGAGCATAAACAGCCTATCTGTGTGGTGTGTCGTGATTCAAGGAAACATAAAAAGCATGACTGCATTCCCATAGATGAAGCTGTACAGGATCTTAAGGAGGAACTCGAGCCTACCCTGAAGTCCTTACAGGAGAAATTGGAAGTCTTTAAGAAAGTCAAACTCACTTGTGATAAAACAGCACAGCATATCAAGAGCCAGGCTAAGGACACAGAGAAAACGATTAAGGAGGACTTTGAGCGGGTTCACCAGTTTCtacgagaggaggaggaggccaaGATAGCTGccctgagggaggaagaggagcagaaGAGTCAGACAATGAAGGTGAAGATTGAAGAGATGAGTGGACAGATATCATCACTTTCAGACAAAATCAAAGCCATAGAGAAAGAGCTGGAAGCTGAAGACATCTCATTCCTGCAGAACTACAATGCCACAATGAAAAGAACCCAATGCCCACTGCCTGATCCTGTGAGGGTTTCAGGAGCGCTGATAGATGTGGCAAAACACCTGGGCAACCTCATGTTCAGAATCTGGGAGAAAATGAAGGAGATTGTTCAATACAcGCCGGTGGTTCTGGACCCTAATACTGTGCACTCAAAGGTACTCTGCTCCATGACCTGGATGGGGTATGATGATTGCTTTGTATGGGGTGGTGAGTTCCAGGAGCGTCCTGACAACCCAGAGAGGTTAGCCCAGGGATGGGCCATGGGCTCTGAGGGCTTTACCTCAGGGACACACAGTTGGGACATTGAGATTGATGACGAGTATTGGTTTGCAGGTGTGGCCACTGAGTCTGTCAATAGGTCTGATCCTAGAGATGAAGTCTGGGGTGTTAGCCATGTTGATAGTTTTAATACAGATTATAAGGAAGACTTTGATTATGTATATAAAGTAAGTTGCCCAAATACTGAAACCATTTACCTCCCTGTGAGACACAACTCCAGAGTTAAGGACAGGATCAGAGTTCAgctggacagggacagaggagagCTATCATTCTACGACATTGATAatgacacacatatacacacacgcacacacgcattcACTGGGagaatatttccatttttttcagTGCGTGACGGTCTGAGGATTTTACCAGCGAGGGCCTCTATAACAGTGGAACAGCACATTTAGGGCTGCTGGAAAACGTGTGGTGAGCTGGCATTTACCCCAGTCAGTTTCATCGGGTTTTGCAACACCCTACTACTGTTAATTTGAAATAATAAAAATATTGACAAAGTGTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415170 lncRNA upstream 12511 9854746 ~ 9858120 (+) True G365205
TU415166 lncRNA upstream 19279 9851143 ~ 9851352 (+) True G365202
TU415149 lncRNA upstream 22339 9848080 ~ 9848292 (+) True G365196
TU415148 lncRNA upstream 23552 9846874 ~ 9847079 (+) True G365195
TU415147 lncRNA upstream 24228 9846192 ~ 9846403 (+) True G365194
TU415195 lncRNA downstream 4302 9878531 ~ 9878767 (+) True G365223
TU415160 lncRNA downstream 5033 9879262 ~ 9881261 (+) True G365199
TU415153 lncRNA downstream 11085 9885314 ~ 9891393 (+) False G365198
TU415159 lncRNA downstream 11085 9885314 ~ 9911145 (+) False G365198
TU415158 lncRNA downstream 14244 9888473 ~ 9891393 (+) True G365198
XM_036976728.1 mRNA upstream 36458 9810724 ~ 9834173 (+) False ca9
XM_036976726.1 mRNA upstream 36460 9810725 ~ 9834171 (+) False ca9
XM_036976725.1 mRNA upstream 72808 9782455 ~ 9797823 (+) False dcp2
XM_036976724.1 mRNA upstream 72808 9782457 ~ 9797823 (+) True dcp2
XR_005051972.1 mRNA upstream 145066 9725438 ~ 9725565 (+) True LOC118964779
XM_036976746.1 mRNA downstream 234643 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 234643 10108872 ~ 10124536 (+) False LOC110523169
XM_036976750.1 mRNA downstream 388476 10262705 ~ 10281350 (+) True ankrd55
NM_001281326.1 mRNA downstream 408771 10283000 ~ 10300246 (+) True gp130
XM_036976752.1 mRNA downstream 467003 10341232 ~ 10366701 (+) True slc38a9
TU415150 other upstream 21477 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 641400 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1024515 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1951066 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2178117 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 1102453 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1551413 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2004100 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3234467 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3891018 13765247 ~ 13769296 (+) True G369763

Expression Profile