RNA id: XM_036976734.1


Basic Information

Item Value
RNA id XM_036976734.1
length 9834
RNA type mRNA
GC content 0.55
exon number 59
gene id tln1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9912012 ~ 10059149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATTCACAAATAATTCAGTGACGTTGCGGTTTAATAGAAAAGTTGACGTTGATTTACACGAAATCCACAAGTTCTGAGTCCCCCTGATACACCGCCCCATGCCTGCATCATAGTGTGCTGTGGTTTTGAGTCGCTGAAGGGTGGAGTTTGTACCACCGCCTCTAAAGAACGGGACTAGGGAGGGAGTTGAAAAATCACTATCTGACATTTACCAGCATTTAGAACACCATTTCTGCTGGGGAAAGGGATTTAATTGCGATATTTCACATTTGAAAGCGGGAAATCTTCGGAAGAGGAACTAAGAGCCGGGCCAAGAACCCTACAGCGCCATAACCGACTGGGAGGACATCTCCCATTAAGACCAGTTTCTATCAGGTGTAACGGTGGTGGAAACGGAGAGCGGCAGTCATGGTGGCCCTGTCACTGAAGATTGGCGTGGGGAACGTGGTGAAGACCATGCAGTTTGAGCCCTCCACCATGGTGTACGACGCCTGTCGAATGATCAGGGAAAGAGTCCCCGAGGCACAGCTGGGCCAGCCCAATGACTATGGTCTGTTCCTGTCCGATGAGGACCCCAAGAAAGGCATCTGGCTGGAGGCAGGCAAGGCCCTGGACTACTACATGCTGAGGAATGGGGACACTCTGGAGTACAAGAAGAAGCAGAGGCCCTTGAAGATCCGCATGCTGGACGGGACAGTGAAAACCGTCATGGTGGACGACTCCAAGATCGTCAGCGACATGCTTATGACCATCTGTGCCAGGATAGGTATCACAAACTATGACGAGTACTCGTTGGTGCACGACATGGttgaggagaagaaggaggagatgaCGGGGACTCTGACAAGACGGGACAAGACTCTGATGAGAGACGACAAGAAGATGGAGAAACTTAAGCAGAAACTCCACACAGATGACGAGTTGAACTGGCTGGACCATGGGCGGACGCTGAGGGAGCAGGGTGTGGAGGAGACCGAGATGCTGCTCCTCAGGAGGAAGTTCTTCTACTCAGACCAGAACGTGGACTCACGAGACCCGGTCCAGCTCAACCTGCTCTACGTCCAGGCCCGTGATGACATTTTGAACGGCTCCCATCCCGTCTCCTTCGAGAAGGCCTGCGACTTTGCCGGATACCAGTGTCAGATCCAGTTTGGTGACCACAACGAGACCAAGCACAAACCAGGCTTTCTAGATTTGAAAGAGTTCCTCCCTAAAGAGTACATCAAGAACAAAGGGGAGAAAAGAATCTTCCAGGCACACAAAAACTACCAAAACATGACTGAAATCGAGGCCAAAGTCAGCTACGTCAAACTGGCTAGGTCTCTGAAAACCTACGGAGTGTCATTCTTCCTAGTAAAGGAGAAAATGAAGGGTAAGAACAAGCTGGTCCCTCGTCTGCTGGGAATCACCAAGGAGTGTGTCATGCGGGTAGACGAGAAGACCAAGGAGGTGATCCAAGAGTGGAACCTCACCAACATCAAACGCTGGGCTGCCTCGCCCAAGAGCTTCACCCTGGACTTTGGCGATTATCAAGACGGTTACTACTCTGTCCAGACGACTGAGGGAGAGCAGATCGCCCAACTGATCGCTGGTTACATTGACATCATTCTGAAAAAGAAAAAGAGCAAGGACCACTTTGGcttagagggagatgaggagtCCACCATGTTGGAGGATTCTGTGTCACCCAAAAAGTCTACAGTGCTGCAGCAGCAGTTCAACAAGGTGGGGAAGGTGGAGACTGGCTCTGTGGCCCTGCCAGCCATCATGCGTTCAGGGGCCGGGGGCCCCGAGAGCTTCCAGATGGGCTCCATGCCTCAGGCCAAGCAGCACATCACCAGCGGACAGATGCACAGGGGCCACATGCCCCCGCTGACATCTGCCCAGCAGGCCCTGACTGGCACCATCAACTCCAGCATGCAGGCGTTGCAGGCTGCCCAGGCCTCGCTGGAGGAGTTtgacaccctgcctcccctcggGACAGACGCGGCCTCCCAAGCCTGGCGTAAGAACAAGATGGACGAGTCCAAACACGAGATCCACTCCCAGGTTGACGCCATCACCGCCGGGACGGCCTCTATGGTCAATCTCACCGCAGGCGACCCAGCAGAGACAGACTACACTGCGGTGGGCTGTGCCGTGACCACCATCTCCTCCAACCTAACGGAGATGTCCAAGGGGGTCAAGCTGCTCGCCGCCCTCATGGAGGATGAGGGAGGCAACGGAAACCAGTTGTTGGGGGCTGCCAAGAACCTGGCGTGTGCCGTGTCCGACATGCTGAAGACCGCCCAGCCAGCCAACACTGAGCCCCGTCAGAACCTTCTGCAGGCTGCAGGCAACGTGGGCCAGGCCAGTGGCGAGCTGCTGTCTCACATCGGAGAGACGGACGCCGACCCCCGCTTTCAGTTTCTAGGTAAAGGATCTTTCAGGGGTGCAAGGCGGAGCGTCTCCACTTATAGTCACATGCTGGACATGCTTATGCAGCTGGCTAAAGCCGTGGCTAACGCCGCCGCCGCTCTGGTGCTCAAAGCAAAGAACGTGGCCCAGAAGACAGAGGACTCTGCACTCCAGAACCGAGTCATCGCCGCAGCGACCCAATGTGCCCTATCCACCTCCCAACTGGTGGCTTGCACCCGGgTGGTCGCTCCCACCATCAGCTCTCCGGTGTGCCAGGAGCAGCTGATTGAGGCAGGCAAGCTGGTTGCCAAATCGGTGGACGGCTGCGTGGATGCGTCGCAGGGCGCCACCAGCGACGAGGGGCTCCTCAAGCAGGTGGGCGCCGCCGCCACAGGCGTCACCCACGCCCTCAACGAGCTCCTGCAGCACATCAAGCAGTACGCCCACGGAGGCCAGCCCATAGGGCGCCACGGAGAGGCCACCGACCGCATCCTGGACGTCACCGAGAACATCTTCAGCTCCATGGGAGATGCCGgTGAGATGGTGCGTCAGGCCCGCATCCTTGCCCAGGCCACCTCGGACCTGGTCAACGCCATCAAGATGGACGCAGAGGGCGAGTCGGACCTGGAGAATTCCCGCAAGCTGCTGTCAGCCGCCAAGCTCCTGGCAGACGCCACGGCCAAAATGGTGGAGGCTGCCAAGGGCGCAGCCGCCAACCCGGACAGTGAGGAGCAGCAgcagagactgagggaggcagcAGAGGGCCTACGCATGGCCACCAACGCGGCTGCCCAGAATGCCATCAAGAAGAGGCTGGTCAACAAGCTGGAGAACGCAGCCAAGCAGGCCGCCGCAGCAGCCACTCAGACTATAGCCGCCGCCCAGCACGCCGCCTCGTCCAATAAGAACCCAGCAGCCCAGCAGCAGCTTGTCCAGAGCTGCAAGGTGGTGGCAGACCAGATTCCTCAGCTGGTCCAGGGAGTGCGTGGAAGCCAGTCCCAGCCCGACAGCCCCAGTGCCCAGCTCACCCTCATCGGGGCCGGCCAGAACTTCCTCCTGCCTGGTGCCAAGATGGTGACGGCTGCCAAGGCCACAGTACCTACCATTGGCGACCAGGCCTCTGCCATGCAACTCAGCCAGTGTGCCAAGAACCTGGCTACTGCCCTTGCCGAGCTCCGCACGGCCGCACAGAAGGCACAGGAAGCATGTGGTCCTCTGGAGATCGACAATGCTCTGACGGTGGTCCGAGGCCTGGAGAAAGACATGGTGGAGGCCAAGGCTTCAGCTGGTGATGGCAAACTCAAACCCCTGCCCGGAGAGACGCTGGAGAAGTGCTCTCAGGACGTGGGCAACAGCACTAAGGCTGTGAGCTCTGCCATCGCCCAGCTGCTGAGTGAGGCCACCCAGGGCAACGAGAACTACACAGgtATGGCAGCCAGAGACGTGGCTCAGGCATTGCGCGCTCTGGCCTCGGCCGCCCGTGGGGTTGCTGCGACGACCGCCGACCCTCAGGCCCGCAACGCAATGCTGGACTGCGCTAGTGACGTTATGGACAAGTCGGCCAATCTGATCGAAGAGACCAAGAGAGCCATTGCCAAGCCGGGAGATCCTGACAGCCAGCAGAGACTGGCACAGGTGGCCAAGGCTGTATCCCAGGCCCTGAACAGGAGTGTGAACTGCCTACCTGGACAGAGAGATGTGGACAACGCTATAAGAACAGTCGGAGAGGCCAGTAAGAAACTACTGGCCAATTCTtTCCCACCCAGTGGGAAGAGTTTCCAGGAGGCGCAGGTCAACCTGAACCAGGCTGCAGCCGGTCTCAACCAGTCAGCCAATGAGCTGGTCCAGTCGTCCAGGGGCACCACCCAGGACTTGGCCAAGGCCACTGGCAAGTTCGGCCATGACTTCGGAGAGTTCCTGGATGCCGGCGTGGACATGGCCGGCCAGTCACAGAACAAGGAGAACCAGACGCAGGTGGTGTCCAACCTCAAGACCATCTCCATGTCGTCCAGTAAGCTGCTGCTCGCCGCCAAGGTCCTGTCCACAGACCCCAACTCCCCCAACCTCAAGAACCAACTAGCAGCCGCCGCTCGtgCCGTCACTGACAGTATCAACCAGCTCATCACCATGTGTACCCAGCAGGCCCCGGGCCAGAAGGAGTGTGACAATGCTCTCCGGGAGCTCGAGACTGTTCGGGGTATGCTTGAGAACCCCACCGAGGCGGTCAGTGACCTCTCCTACTTTGACTGCATCGACAGTGTCATGGAGAACTCCAAGGTCCTGGGGGAAGCCATGGCTGGAATCTCCCACAACGCTAAGAACAGCAATCTGCCTGAGTTTGGGGACTCTGTCAGCTCTGGCTCTAAAGCCCTGTGTGGCCTTACTGAAGCAGCTGCCCAGGGTGCCTACCTGGTTGGAGTGTCAGACCCTAAAAGCCACGCGGGCCAGAAGGGGTTGGTGGACCCTGGCCAGTTTGCCCGTGCCAACCAGTCCATCCAGATGGCATGCCAGAACCTGGTGGACCCGGCCTGCACCCAGTcccagGTCCTCTCTGCCGCCACCATCGTGGCCAAGCACACGTCGGCGCTGTGCAACGCCTGTCGCCTGGCCTCCTCCAAAACAGCCAACCCTGTTGCCAAGCGACAGTTTGTCCAGTCTGCTAAGGAGGTGGCCAACAGCACAGCCAATCTGGTCAAGTCCATCAAAGCTCTGGATGGAGCGTTTAACCAGCAGAACAGAGAGAAGTGTAGGGTCGCCACAGGGCCCCTGATAGAAGCTGTGGATAACCTCACCGCCTTCGCCTCCAACCCAGAATTCGCCAGCGTGCCCGCTCAGATCAgcgctgagGGCCTGGCAGCGATGGAGCCCATCGTGGTTGCAGCTAAGACCATGCTGGAGAGCTCCACAGGTCTGATCCAGACCGCTCGCTCCCTGGCCGTCAACCCCAAAGACCCCCCCAAGTGGTCAGTGCTGGCCGGACACTCCAGGACCGTTTCCGACTCCATCAAGAAACTTATCACCAACATGAGAGACAAAGCCCCAGGCCAGAGGGAGTGTGACGAGGCCATCGAGGTGCTGAACAACTGTATTCGGGAGGTGGACCAGGCCTCCCTGGCAGCCATCAGCCAGCAGCTCACCCCAAGAGAGGACATCTCCCAggaggctcTGCATGAGCAGCTGGCAGCTTCGGTCCAGGAGATCAGCAATCTGATAGAGCCGGTGGCCATCGCAGCTCGCTCTGAGGCTTCCCATCTGGGACACAAGgtGTCTCAGATGGTGAGCTATTTCGAGCCCCTCATCATGGCAGCCATCGGCACGGCCAGTAAGATTCAGAGCAGCCAACAGCAGATGGCGGTGTTGGACCAGACCAAGACGCTGACAGAGTCAGCCCTGCAGATGCTCTACACGGCCAAGGAGGCCGGAGGAAACCCCAAGgcgGCCCACACCCAGGAGGCTCTGGAGGAGTCCGTTCAGATGATGAAGGAGGCGGTAGACGACTTAGGCGCCACCCTGTCGGAGACAGCCAGCGCTGCGGGCGCCCTGGGCGGCATGGTGGACTCCATCACCGCTGCCATCAACAAGATGGAGGAGAGCCCTGCCGGCGAGCCCGATGGCTCCTTTGTGGATTACCAGACTACCATGGTGAAGACTGCCAAAGCCATCGCCGTCACCGTGcaggagatgGTGACTAAGTCCAACACCAACCCAGATGACTTGGGAGGTCTGGCCAGCGAGCTTACTAATGAGTTTGGAGAGCTAGCCACCGAGGCCAAATACGCTGCCATCACTGCAGAGAACGACGAGATTGGTTCCCACATCAAGAAGCAGGTTGGGGAGCTCGGcttcaactgtactgggctggTGACTAAGGCCGGAGCTCTGCAGTGTAGTCCCAACGACTCCTTCACCAAGAAGGAGCTGATCGacagcgcacgcaaggtctccGAGAAGgTGTCTCATGTGCTGGCGGCCCTTCAGGCTGGTAACCGTGGCACCCAGGCCTGCATCACAGCAGCCAGTACCGTGTCGGGCATCATCGCCGACCTGGACACCACCATCATGTTCGCCACCGCCGGCACGCTAAACCGTGAGAACTCGGAAACCTTCGCCGACCACAGAGAGCACATCCTAAAGACAGCCAAGGCGCTGGTGGAGGACACCAAGCTGCTGGTCTCTGGTGCAGGGGCCAGCCAGGAGAGACTGGCCCAGGCTGCCCAGTCCTCCGTCATCACCATCACCAAACTGGCCGACGTGGTAAAACTGGGCGCCGCCAGCCTGGGCGCCGAGGACCCCGAGACACAGGTGGTCCTGATCAACGCTGTCAAAGACGTTGCCAAGGCTCTGAGTGACCTCATCAGCGCTACCAAGGCCGCTGCAGGCAAGCCTCACGACGACCCTGCCATGCTGCAGCTGAAGAACTCTGCCAAGGTGATGGTGACCAACGTGACGTCACTCCTGAAGACAGTGAAGGCAGTGGAGGACGAGGCCACCAAGGGCACACGGGGACTGGAGGCCACCATTGAACACATCAAACAGGAACTGGCTGTGTTCAGCAATGGCGATCCTCCCCCCAAGACGTCCACTCCAGAGGATTTCATCCGCATGACCAAAGGCATCACCCAGGCAACAGCCAAAGCAGTGGCTGCTGGGAACTCGTGTCGCCAGGAGGACGTAATCGCTACGGCCAACCTGAGCAGGAGGGCCATCGCCGACATGCTGCACTCGTGCAAGCAAGCCGCCTACCACCCAGAGGTCAGCAAGGAAGTTCAGAACCGGGCCCTGCGCTATGGCAACGAGTGTGCCTTGGGCTACCTGGgtctgctggagcatgtgctagtGCCGATCATCCAGAAGCCCAGCCACGAGCTCAAGCAGCAGTTGGCTAACTACTCCAAGCGCGTGGCAGGCTCCGTCACCGAGCTCATCCAGGCCGCCGAGGCCATGAAGGGAACGGAATGGGTGGACCCCGAGGACCCCACGGTCATCGCTGAGAACGAGCTTCTGGGAGCTGCTGCTGCCATTGAAGCAGCCGCCAGGAAACTGGAGCTGCTGAGGCCCCGCACCAAACCCAAGGAAGCGGACGAGAGCCTGAACTTCGAGGAGCAGATCCTGGAGGCGGCCAAATCGATCGCAGCCGCCACCAGTGCTCTGGTCAAAGCTGCCTCAGCCGCCCAGAGGGAACTGGTGGCCCAAGGGAAGGTCGGTGCCTGCCCAGCGAATGCAGTGGATGATGGACAGTGGTCTCAAGGTCTCATTTCAGCCGCCCGAATGGTTGCTGCAGCGACCAGCAACCTGTGCGAGGCGGCCAACTCGGCGGTGCAGGGCCACGCCAGTGAGGAGAAGCTTGTCAGCTCAGCCAAGCAGGTGTCTGCCTCCACTGCCCAGCTCCTGGTGGCCTGCAAGGTCAAGGCTGACcaggactcccagaccatgaaGAGGCTACAGGCTGCCGGAAATGCTGTTAAGAGGGCCTCCGATAGCCTGGTAAAGGCGGCACAGAAAGCAGCCTTTGACGCCCAAGACGAGCAGGCCGTGGTTGTTAAGAGCAGGATGGTGGGCGGCATTGCTCAGATCATTGCTGCCCAGGAGGAAAtgctgaggaaggagagggagttgGACGAGGCCAGAAAGAAGCTGGCCACCATCCGACAGCAGCAGTACAAGTTCCTGCCCTCCGAGCTCAGGGAGGACGGGCAGGAGCAGTGATgaaacgtgtacacacacacacacacacacacacacacacacacacacacacacacatatatatatacagcgaAGACAAATCCGATGTTCAGGGGCTACATCCCCAGGCTATATTAGAGAAAAGAGGAAAACTAAGAGGTGTTATGCTTGAAGAGGAGCAATATTAGGGTGAGATAATTAAAGGGGTAAAAAGTGAAAGCTGTATTAGGATGTTTATTTTAAGTGTATTTCTTTTCTTAGATTTATTTCTCACCTTCAAGAGCGTTACAGTGCCACTGGTTTTGTTTTTTGGATCatgctaaaaaaatatatatatatatgcatccAAGTCTTTGAGGTAGTCCATGATAGTTTGTGATTTAATTGAGCGTTTAGGTCCTAGATTGCATGTGTTCACTGCCGCTTCACCGTTTTGATTAAATTCACATCCTCCTGCCAATAACTGATATTTGCCTTTAACGCTAGCATGCTATTATTTTAGTGAGCACAATAACCATCTGTTAGGCGGTGTCCGTTTttctgttttttgggggggggggggattagaaAAATGCAGTCACCAAAAGGTGGGCTTACAGCGGGTAAATGTTGAGACCTTACTTGACTGACCAATGATTTTAACTGGCCAGGGTGAATGGTAAGAGACGGTCGGTCGGTCACCGTACAACACAGAGCTCGGCTAGGTGTTTACCATAAACAACTGTGGCTTTGGTCAGATCCCAAAGAAGACATCGTTTAACAAGAATGTGTGTTGTCTTTTTATTTCAACCAATGAAATGTATCTGTATTTTGTTGCAATTTGGAACCAGAGGTGCAATGATTTACTTTGCGATTAAACAATTCATAGAGAGAAaacatatcttttttttttttcttttttttttaagagaaATAATGCTATGAAATGTGTTACAAATGGTATCTTCTATTACATTTATATGTTAATAAAGTATATGTGAGTATTTGTTTGTGTCATCATATGAACTTTTGGACCTGATATTAACTGTGTTTGAAGCTCATAAAGCCATACTTTGCTTTCTTCAGGACATTGTTTTGAATCATGAATGGCTGTTCCTTCGGATGCTATTGAGTGGTTAAAATCTTTATCAGATGTTGACTGTGTAATATGCATCTAATAGCCAACTGTAACCAGTAGATCTTTAGAAACAAATTTAGATATGTATTTTTGGGGTAATTTCTCTTGTCGCAGTACAATCCTATGATGGCCATTGTATGCAAAGGATAATGTGTCCAATGTTGTTATTAACCACCATGTACCCTGAATTGCCAGCCTATTTCACATTGTCAGAGGCCTCCTTGTAACCTAACGTTCTTTCAACATATCATTGAGTCAAAAAGTGCCTGCTATATGTATTttacaaataattgtatttaACTGTTAACATTTTCCCATCTTCAAGTGCACTTATCCATTTGTTTAACTTAACACATCATATAAATCCACTCTTATACAAACATTTGTTTTCTCTTTTCTCTTAATCAAAATAGTTGGATAGAAAACAACTGTTAAGTTGCCTATGTGTTGATGACAAACATAGGGAAAGCCTAacttgagtgtttttttttttcttttcattttctaATTGTTTTGTTGACCTTTCTGATTTTGATACTATATACATGTATTAACAGTGCTATGGGATCACCATCTCAATAGTATTGTAAAAGAGATTTATGGTCAATAAAGCTGGTTTTCCCTGAGAAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416171 lncRNA downstream 41369 9870418 ~ 9870643 (-) True G366107
TU416160 lncRNA downstream 62227 9849459 ~ 9849785 (-) True G366097
TU416140 lncRNA downstream 100510 9810924 ~ 9811502 (-) True G366077
TU416103 lncRNA downstream 155297 9755440 ~ 9756715 (-) True LOC110522838
TU416082 lncRNA downstream 189099 9722376 ~ 9722913 (-) True G366019
TU416271 lncRNA upstream 44861 10104010 ~ 10156606 (-) True G366199
TU416295 lncRNA upstream 64374 10123523 ~ 10124464 (-) True G366215
TU416369 lncRNA upstream 223786 10282935 ~ 10284638 (-) True G366279
TU416392 lncRNA upstream 235873 10295022 ~ 10295694 (-) True G366302
TU416363 lncRNA upstream 274619 10333768 ~ 10334422 (-) True G366277
XM_021601611.2 mRNA downstream 792 9885315 ~ 9911220 (-) False tpm2
XM_021601614.2 mRNA downstream 792 9885315 ~ 9911220 (-) False tpm2
XM_036976733.1 mRNA downstream 792 9885315 ~ 9911220 (-) True tpm2
XM_021601618.2 mRNA downstream 12644 9885315 ~ 9899368 (-) False tpm2
XM_021601616.2 mRNA downstream 12645 9885315 ~ 9899367 (-) False tpm2
XM_036976740.1 mRNA upstream 9728 10068877 ~ 10082603 (-) False hmgcs1
XM_036976741.1 mRNA upstream 9728 10068877 ~ 10082604 (-) False hmgcs1
XM_036976743.1 mRNA upstream 9728 10068877 ~ 10083142 (-) False hmgcs1
XM_036976744.1 mRNA upstream 9728 10068877 ~ 10083295 (-) False hmgcs1
XM_036976745.1 mRNA upstream 9728 10068877 ~ 10083295 (-) False hmgcs1
TU415770 other downstream 721914 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 861304 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 1607829 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 3186032 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 3360338 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 2074903 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 2646417 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 2646417 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 4148041 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 4368189 14427338 ~ 14428591 (-) True G370635