RNA id: XM_021601624.2


Basic Information

Item Value
RNA id XM_021601624.2
length 7492
RNA type mRNA
GC content 0.52
exon number 20
gene id map3k1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10127268 ~ 10180089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGCCCTCCACTCCCTCTTCATAGAACCTAATAAGTGATAAACTCCGGGACTGAAAATGGCGACGGCGGGGAGCCGGACCTCGTCGTCGGGAATATACGAGTCGAATAACAGCACAAACGTTGAAAGCTGTCTTCAAGGAAATTCAAGCACCCCTAGTCTTCCAAGCAGTCACGGTAAGGCGAAGAGTAGTACAGGGGAAAACTCACAATGGAGACGTAAAGATCTACGCAAAGTCCGAAGTGTGGATCTGGATAAACCTGAGTCGCTGCTCCTATCTCCTGAGACTGGGACGGCTCCGATATCCGCGCAGCTTCACTTCTTGTCCATTTCCTCGCCTGGTGCGGTCCAGGCTACTTTATTACAGAAAACACCCCACATTCAGCAGAGCAACTCACTAACTGATCACCCTCTCTCGGATAAAACGACTAATAGTTTGTCTACAGCCGCTCAGGAATTGTTGAAAACTTCTTTCAAAAACAGCAGCGACCATCTCAGTCCGGATAATGGTGCAACCGTAACTTCAATAGAAGTTAATACTACACAAAATAGTCGCGACATGGAGAGTAAGGATACCCTGCGGGGTCTGCAGAAGATGGAAGACCGGCCAGAGGAGCGGATGATCCGGGAGAAGCTCAAGGCCACCTGCATGCCCACCTGGAAGCACGAGTGGCTGGAGAGACGTAGCAGGAGGGGCCCGGTGgtGGTGAAGCCCGTCCCCCTGCGACCGGACGGGAGCGAGGCGGGCTGCAAAGGGGCAGAGGTCGGAGCCGACGCACCCACCAGCTCCTCCCCCCAGCAGAGCAGAGGCCGCCGCAGCCCCTCCCCTGgacccccctcttcctcctcctcttcctctggcaGGGCCGGTGGGAAGCCTGAGTCCCCCGGGGTGCGCAGGAAGAGGGCCTCACCCGTGCCGTTTCAGAGTGGCAGGGTGACGCCCCCTCGCCGGGCGCCCTCCCCAGACGGCTTCTCCCCCTACAGTCCTGAGGAGACCAGTCGCCGTGTCAACAAGGTCATGAGGGCTCGCCTCTACCTACTGCAGCAGATAGGCCCCAACTCCTTTCTGATTGGAGGAGACAGCCCCGACAACAAATACAGGGTGTTCATTGGTCCACAGACCTGTAGCTGTGGCCGAGGGGCGTTCTGTATCCACGTCCTCTTCGTCATGCTCCGTGTCTTCCAGCTGGAGCCCTCAGACCCCCTGCTCTGGAGGAAAACCCTAAAAAACTTTGAGGTGGAGAGCTTGTTCCAGAAGTACCACAATCGCCGCAGCTCGCGCATCAAGGCGCCGTCGCGCAACACCATTCAGAAGTTTGTGTCGCGCATGTCCAACCCTCACACGTCCTGTCCGTCCAGCAACTCTGGTGCCTCGAGCAACGACAGCagtCTGAAGGATGAAGAGGAGCAGATGTGTCCTATCTGTCTGTTGGACATGCTGGATGAGGagagtctgactgtgtgtgaggAAGGCTGCAGGAACAAGCTGCACCACCACTGCATGTCTATCTGGGCTGAGGAATGCCGGCGGAACCACGAGACGCTCATCTGCCCCCTCTGTAGAGCCAAGTGGAAGTCCCATGATTTTTACAGCCATGACCCCTCATCTGTCTCCATGGAGAATGCGGCAGCGTCATCGTCCCACAGTGAAGGGGGTTCAAGAGGGGGGTCATCGTCCCAGGAGGGGGACTTCACCCTGCCCCAATACGGGGTCCAGCAGATCCCCCAGACCTACAAAGAACTTGCTGAGCCTTGGATAAAGGTGTTTGGCATGGAGGTGGTGGGTTGTCTGTTCTCCAGGAACTGGAACATCAGGGAGATGGCCCTGCGGCGGCTGTCGCATGATGTCAGCGGCGCGCTCCTCCTGGCCAACGGCGAACGCTCCTGGCCGGGGGCGGGGCTAGGGGCCGGGGCGGGCTGCTCTGAGGTGTCAGGTGACGTGGTGGTGGAGTCATGCTGTAGTGTCCTCTCCATGGTGTGTGCTGACCCTGTCTACAAGGTCTACGTGGCTGCACTGAAAACCTTGCGGGCCATGCTGGTGTACACGCCCTGCCACTCCGTGTCTGAACGCTCGCGCCTGCAGCAGCTGCTCCGGTCCGTGGTGGAGACCATCCTGGTCAAATGTGCCGACGCCAACAGTCGTACCAGCCAGCTGTCGGTGTCCACACTACTGGAGCTGTGTAAAGGCCAGCTGGGAGAGCTGGCTGTAGGTAGAGAGATCCTCAAAGCAGGGTCCATTGGTATTGGCGGGGTGGACTATGTCCTGAACTGCATCCTGGGGCCCCAGACGGAGGCCAATAACTGGCAGGCCCTGCTGGGCCGTCTGTGTCTGATTGACAGGCTCCTGCTGGAGTTCCCTGCTgagttctacccacacattgtCTCCGGAGGGGACTGGCACCAGTCTCAGACCCTGGGGGATAGGTATCAGAAGCTGCTCCCCCTACTGAGCTTCTCGCTGCAGTCCATCGACAACTCCCACTCTATGGTGGGCAAGCTGTCTCGCCGCGTGTTCCTGAGCGCCGCGCGCATGGTGGCCCGCGTGCCGCACGTCTTCGTCAAGCTCCTGGACATGCTAAGCGTCACCAGCTCCACGCACTACGCCCGCATGCGCCGCCGCCTGCTCGCCATCGCCGAGGAGATGGACATCCTGGACGCCATCAACCTGGGCCTGGAGAGCATGGAGCACAGCGCCAGCGAGGCGCACCAACGGGCCAACGCCGCCTTCCTTGAGCCCTCCGCACCTCAGAACTCTCCCAACGTGACCGAGAGCAACACCCCGACGCATACGGTCCAGATGACCAgcgggaagggagggagaggtttCTCCGGCAACGTGGGAGCGAGTCCTGAGGATATAAGTGAGAGGTTAGCGGCCATCTCCACTAGCGCTGGGCGTCCCAATATGGCCACTTCCACATGCGGTGGGGCCCTGGCCGAGCACCAAAAGCCCCCCGTTCAGGCGCGTAACCGCCCCCTCAGCCAGTGCCTGAACTCTACGCCTACCAGCCAAGCCCCCAGCCTCCCCTCGCCCTCCGCCTCccaccctcccccctccttcccaggACCTGACGGCAGTACCAAACCCCGGCCCCAGAGCTTCGTCCCCAGCAAGCTAGCGTCAACTGCCCCCTCTGCTTCCTCCTGCTCTCCAGGCTCCCAGCGCAGGTTTCCCCAGCAGAAGCCCTTCAGCAACAAGGACCCAGAGAAGCAGCTCCCCTCCCCCTGTTTCACCCAGGCCCGACCCCTCCCCTCCAGCCAGATCCACAGACCAAAGCCCTCCCGACCCACCCCCTCCGAGGGGGCCAAGACCCTCTGCACCTCGCCCACTCCAAGAGCCTCCAAGATGGGCATGAAGCTGGACCTCCAGGGGGAAAAGCCCAGCCTCTCCACCAGCGCCTCCGGAGGTGAAGGCCCCTCCACAGGGGGCCAAATGGGGGGTGCCACCACCCTCATCAGCAGCGAGGACAGCTGCTTCACCCCTGTGGAAGAGAAGTTCCGTGGACTGGACGCCTCTGCTGAGCTCAACTCCTCCATGGAAGACCTCCTGGAAGCATCTTTGCCCGTTGCCGGCGACACCACCACCGTCACGTTCCAGTCGGAGGTGGCCGTGCTGTCGCCGGAGCGGGCTGGGGACGGGccgggaggagggggagaggtggggatGTACAGCGAGGACGTGACGCAACACCAGAAGTGCAAGGAGAAGATGGAGGCGGAGGAAGAGGCGGCGCTGGCTGTAGTTATGGCCATGTCCGAGTCGCAGGATGCGCTGCCCGTCATCCCCCAGCTGCAGGTGGATAAAGACCaggacatcatcatcatccaggCAGATACTCCAGAGACTCTGCCTGGCCATACCAAAGCCAAGCAGCCCTACAGGGAGGGCCAGGAGTGGTTGAAGGGCCAGCAGATCGGCCTGGGGGCCTTCTCCTCCTGCTACCAGGCCCAGGACGTGGGCACTGGCACCCTGATGGCAGTCAAACAGGTGACCTACGTCAGGAACACATCGTCGGAGCAAGAGGAGGTGGTGACTGCTCTGAGGGAGGAGATCCGGATGATGGCCCACCTCAACCACCCCAACATCATCCGTATGCTGGGGGCCACCTGCGAGAAGAGCAACTATAACCTGATGGTGGAGTGGATGGCAGGTGGCAGTGTGTCCCATCTCCTGAACAAGTATGGGGCCTTCAAGGAGGCTGTGATCATCAACTACACGGAGCAGCTGCTCCGAGGCCTGGCCTACCTCCACGAGAACCAGATCATCCACAGAGACATCAAAGGTGCCAACCTGCTGATTGACAGCACAGGTCAGAGGCTGAGGATAGCTGACTTCGGTGCTGCAGCCAGACTGGCCTCCAAGGGCACTGGAGCAGGGGAGTTCCAGGGCCAGCTCCTGGGAACCATTGCCTTCATGGCCCCAGAGGTGCTGCGTGGACAGCAGTACGGCCGGAGCTGTGACGTGTGGAGTGTGGGCTGTGCCATCATCGAGATGTCGTGTGCCAAGCCCCCCTGGAACGCAGAGAAACACTCCAACCACCTCGCTCTCATATTCAAGatTGCGAGTGCCACCACGgcgccctccatccctccccaacTGACCCCTGGCCTGAGGGACGTCACCCTGCGCTGCCTTGAGCTGCAGCCTGCCGACCGGCCCCCATCCAGGGAACTCCTCAAGCACCCCGTCTTCCGCCTCAACTGGTAGTCCCCAACATTCTCCCACAGTCCCCAACATTCTCCCACAGTCCCCAACATTCTCCCACAGTCCCCAACATTCTCCCACAGTCCCCAACATTCTCCCACAGTCCCCAACATTCTCCCACAGTCCCCAACATCCTCCCACAGTCCCCTAGCCTCCCTATCCCATAGTGTCTACTACTGAAGGCCCAGCCAGCCTGCctgcttttctctcctcctcccaccgcTGACAATCAGACCAGCCTCCATAACACAAGACCAGCGTCCCTAACCCTAGACCGACCTCCATCCACCACCGACCAGCCTCCCTAACCCTAGACCGACCTCCATCCACCACCGACCAGCCTCCCTGACCCCAGACTGCCCTCCATCCACACCAAGCTGCCCCCAGTCATGAGTGGAGGGCCTGGGATGGATGGGATACCTGGGTAATACCCTCCCGTTCCACTACTATGGCCTCAAACTGCTGTACCTTAGCACAAAATGCAAAAAGCGAGTCGCAAAAGTTCTACTACGAAAACGGTGCTTTCTTAGTTAGTGCCATGTTGGTATACTGTAGTCTGTATTGCTCTGTTTTATCAAGCCTCTGTTCTGGTAAAGAAATGGTTCCTTTAGCACTTTGGTAGCCATTTTGCAATGGTTTCGAGAAGTTCCTCTTCCCATTTTAACCCCCCGTGAGTCAACAAATAAGTCCTTAGAACCGCGATCTGGAGACGACGGAGTAAAATGGTTTTTATCACTGTTATGTTGTAACGTCGGGTCATAAGTTTCcgactctgtttttgtttttagaGTATCCTATGTGTAGAAGAAAGGCATAATGAAGCTGttttaatcaattgaatttgtgCATAACTGCATTTCTATAAAGATGCTTTTTAAGATGTGCATTTTTACTGTTGGGCCATAAAGCTTAGTCGAATAATCATGAAGATTACTTAAGTATTTCAGGGAGCGGTGATTTATCTAACAGAAACATTGCTAGTTTGGCTAGCATAACGCTGAATGTGAACGCTTATGATGCCCGCATTGtctcaaatgttattttattattttatttttttgagatAAAGATCCCATGTATGAAGTtatgattttatatatatatatatatatatacaataacACCCCAAAAAGATCTAAACATCTTTTTTTGGTGTTATTGTATATTCAAAGCTATCCTTAAGAGATTGAGACATTTATTGTGTATGGGCGTAAGTTTTCCGAAACACACTTTGATGTCGTACCACACTGTTAAAATGAAAACACCCTGTTGGTCTCTTAACTCTCGCTGTTACAATTGAGCCATGTGCATCGCACATATTTTAgccttttttaaataattttatgAGCCCTAAATGCTGTGTCCATACATTCAAAACCGCTATATTCAATATTGATCTACCATTCTTCTGGTGCTGTTCCTTTGTAGAATGTCACGCTACAATTCAACAAttcaattttttattattttttatcttggctctatttttaaaacaaattgttataaaatccatgtacatcTGAGGTTTTCTATGACTCTTCTATTTTCCATTGTGGATActctatataatgaatataaatgctgtacaattttttttatttttggtggAGGGATATTTCCGATTTAAGGCTGACTTTTCTGCTCAAATGTTTTACCATCTCCCTTTGATTAGAATTCTCAAACATGTTCCTAAATGGTGTTAATTTATGAACTATAACTCcaagtgttgttgttgttctggttgTAATCCATTAAAGTAAAAGGATGATAATTAACATGTGGAATGTTTCCTAAGTCAACCTTTTTTTAAATGGGGAATATGCATTTAATTGCTATTTTTATCTGGAATTCCTTAATGGCAAGGGTTTGAGAcaattaaacaaataaaataaaaatgaagcaGAAAATATAATCTATTTAAAACAAATCCTATTCTTTACATGGAGTACAAGCTGATCAAGCTTGAAGAGTTAAATGTAAATACATGTGAAGTTTGGTAGCTAAAATGATTGTACTTGACTGTATTTTTATACCACACTCTTTTCCATTTTATTTTTTGGTTCCTGCTTCGGGTTATTTTTCTTATGCCTTTTTAAAAGCTTTAAAGTTATGCACTCTGGTCTTTTTTATATACTGGAAGAAAAATCTGTTTCTGTCATTCATAAAAGCTAATCAGTATTACTTCAATTTGTCATGTCTATAATTCTTACCAATCTCTTAATGCCTTCTGAATCCTCTTGTCCACCTGTGTCTCAGCCAGCTTGCTGGTCTTTATCTATTTTGTCTTATTTTATGCTGATGTGATGTAATCTTATGTGCTTTTTTTGGATCTAAGCTGGACTGAaatttgtgtgaaattgtttcctgtttcctgtgtcACTTGGTGgtacttttttttatttgtaaagaACATCTTGCTGTTTTATtccagtctctactacctcagGTGTCCTATAGAGTCTCTTCTACCAAagttcactttctctctctctatatatatatttatatatatatatatatataatctttttttaaactttttttctcAAAGATTTTCAGGGCTTAAGGGCTAACTTATATTAGCACCTTTACTGTGCAAATAAACTCATGAAATCTCTGgattaataaaaaaaatggcTTAAGCTGTATCCTGTAAGTTAAAATGTATCAAGATATTTTAATTATTACAATTTTTACCCCATTCTAAGCATTTTATTGCATAAATTGGAACTTAttttggtgtctgtctttatggtaaataaacaaaaaattgGGAAAAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416295 lncRNA downstream 2804 10123523 ~ 10124464 (-) True G366215
TU416206 lncRNA downstream 155717 9970962 ~ 9971551 (-) True G366140
TU416188 lncRNA downstream 207126 9918842 ~ 9920142 (-) True G366124
TU416187 lncRNA downstream 208958 9917935 ~ 9918310 (-) True G366123
TU416171 lncRNA downstream 256625 9870418 ~ 9870643 (-) True G366107
TU416369 lncRNA upstream 102846 10282935 ~ 10284638 (-) True G366279
TU416392 lncRNA upstream 114933 10295022 ~ 10295694 (-) True G366302
TU416363 lncRNA upstream 153679 10333768 ~ 10334422 (-) True G366277
TU416405 lncRNA upstream 220391 10400480 ~ 10420621 (-) True G366314
TU416463 lncRNA upstream 252552 10432641 ~ 10434070 (-) True G366368
XM_036976742.1 mRNA downstream 43887 10068877 ~ 10083381 (-) True hmgcs1
XM_036976744.1 mRNA downstream 43973 10068877 ~ 10083295 (-) False hmgcs1
XM_036976745.1 mRNA downstream 43973 10068877 ~ 10083295 (-) False hmgcs1
XM_036976743.1 mRNA downstream 44126 10068877 ~ 10083142 (-) False hmgcs1
XM_036976741.1 mRNA downstream 44664 10068877 ~ 10082604 (-) False hmgcs1
XM_036976751.1 mRNA upstream 123552 10303641 ~ 10318088 (-) True LOC110523172
XM_036976495.1 mRNA upstream 138147 10318236 ~ 10328956 (-) False ddx4
XM_021601243.2 mRNA upstream 138147 10318236 ~ 10330434 (-) False ddx4
NM_001124193.1 mRNA upstream 138181 10318270 ~ 10329995 (-) True ddx4
XM_036976754.1 mRNA upstream 195022 10375111 ~ 10395549 (-) False sh2d4a
TU415770 other downstream 937170 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 1076560 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 1823085 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 3401288 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 3575594 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 1953963 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 2525477 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 2525477 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 4027101 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 4247249 14427338 ~ 14428591 (-) True G370635

Expression Profile