RNA id: XM_021601243.2


Basic Information

Item Value
RNA id XM_021601243.2
length 2735
RNA type mRNA
GC content 0.50
exon number 25
gene id ddx4
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10318236 ~ 10330434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGGGAGGTCACATTAAATACTGGGTTTTTATCGCGTCCCCAACAAGCGCGCTCTCTTTTTGACGATCCACAACCTTCTGCCACGTGGAAGAACATCAAGACGCTGCGGGAAAGCGTTTCGACAATAACCACATTTGTAGATCATGGACAACTGGGATGAGGTTACCACAAGTAATGAAAGTGGATTGAGCTCGTGGACCAGTGGTGGCCAAAGTTCCAGTTTTGGGAGACCGACTGATAAAGTCAGCTCCTGGAACAGTGGATGTGGTGGCTTTGGTGGCGGCAGAGGCCGAGGGTCCAGGGGAGGTGGTGGAGACTTCAAGAGTTTCTCTTCAGGAGCTGGTGAGAATGGGAATGAAGATAAAGACAGCTCCTGGAACAGTGGTGGAGGCTTCAGGGGAAGAGGCAGAGGGGGCGGCAGAGGATCAAGGGGAGGAGGCATCCGAAATGGGGATGATGGCAATGACGGTGGGTTTGGAGGTAGCCAGGGAGGCAGAGGTGGCAGGGGAGGCTTCCGGTCAGGTGGTGGTGATGGCGGAGGATTTGGCGGAGGAGGTTATCGTGGACGAGATGAAGAAATTTTCTCTAAAGGCTCAACCATGGatggtggtggagatggtggcAATCCAGGTCCCCCAAAGGTGACCTATGTGCCCGAAGCCCTCTGTGAGAAGGAGTCGTCTATTTTTGCTCATTATGAGTCAGGCATCAACTTTGATAAGTACGATGACATCTTGGTCGATGTCAGCGGCAGCAATCCGCCAAAGGCAATCATGGGTTTTGAAGAGGCTGCCCTGTGTGAATCTCTGAACAGGAACATCAGTAAGTCTGGCTATAAGAAGCCCACCCCAGTACAGAAGCATGGCATTCCCATCATCGCTGCTGGCCGGGACCTCATGGCCTGTGCCCAGACTGGATCTGGGAAAACGGCCGCATTCCTACTGCCCATCCTGCAGCAGCTGATGGTGGACGGCGTGGCAGCTAGTCAGTTCAGCGAGATCCAGGAGCCAGAGGTTATTATAGTGGCCCCAACCAGGGAGCTGATCAACCAGATCTACATGGAAGCCAGGAAGTTTGCCCATGGAACTTGTGTGCGTCCTGTGGTGGTTTACGGTGGCATAAGCACCGGTCACACCATTCGCGAGATACTGAAGGGCTGCAATGTGCTGTGTGCGACTCCAGGAAGACTGATGGACATTATTGGAAGAGGAAAGATTGGCTTGAGCAAGCTGCGTTACCTGGTGCTGGACGAGGCTGACAGGATGCTGGACATGGGCTTTGAGCCTGCGATGCGCAAGCTGGTGGGGTCCCCAGGCATGCCAGCTAAAGAGGATCGCCAGACCCTTATGTTCAGCGCTACCTACCCCGAGGACATCCAAAAACTGGCTGCTGACTTCCTGAAGAAGGACTATCTGTTCCTTGCTGTGGGTGTGGTGGGCGGAGCCTGCAGTGATGTGGAGCAGGTCGTGGTTCAGGTGACCAAGTTCTCCAAAAGAGACCAACTACTGGAGGTCCTAAAGACTACAGGGTCTGAACGCACAATGGTCTTTGTGGAAACCAAGAGGCAGGCTGACTTTATAGCAACGTTCCTGTGTCAGGAGAAGGTTAATACTACTAGTATTCACGGTGACCGTGAGCAGAGGGAGCGTGAACAGGCGCTCGGCGACTTCCGCTCCGGAAGGTGTCCTGTCCTGGTGGCCACCTCTGTTGCTGCCCGCGGACTGGACATCAAGGATGTCCAACACATAGTCAACTTTGACCTCCCCAACAACATTGATGAGTACGTCCACCGCATCGGGAGAACAGGTCGCTGTGGGAACACCGGGAGAGCTGTGTGTTTCTTTGACCCGGAGGCTGACGGCAACCTGGCGCGCTCCCTGGTCAAAGTCCTGTCTGGGGCCCAGCAGGAGGTGCCCAAATGGCTGGAGGAAGCTGCCTTCAGTGCTCATGGCACCACAGGGTTCAACCCAGGTGGCAGAACCTTTGCCTCTACTGATAGCAGGAAGGGTGGCTCTTTCCAGAGAGATGGGGCAAGTCATCTAGCTGCTGCCCTGAGCAGTGGCGCAGACGACGACGAATGGGAGTGATGATGCACATCTACATATTCTTTTAGTTTTTGTTTTCAAGTCATGTTTTGGTTCGATTTAACTTTTTCTTTTAGTGTTATTTTGTTTAAAGAAAATAGTTTTGCACTGCTTGATATTTCTGGAAATGTGCGTGTGGTCCTGGATATGGGAAAACCCATTAATGTCAACCACTGGTTAAAATCTGTGTGCTTGAGGTGAAACTTCACAAATGAATGTTCTAGCTATTATTAGTGCTACTGGTTCTTGTGGTTTGAATTGTGACGCATCACTTGAACTTATTATTTTCCTTTTTCACCCAAATGTTTTACCTCGTTGAAAATGTGCCATTTACACCCTAGTGTGTTTTGAACTGAACTATTGAGTAACGCGTGTCTGTCCCCAAATAATACATGTAAAGCGTTGTATTTCTGTAAGGATTCTGCGTTTAGACCTAACTGTGGTTCTGTTAACCAGTCTGAGTTGACCCACGTTTTGGATCGCTTGTTGTAACGGATGTACAAGAGTGCTTATGTTGTATAAAATATTCATGGCATTTTGTGCCAGGCAAAATTagtcaatacatttgatttacatGATTAATTCATGCAGACATTTGAAATATGGATGAAGTCCCATTTTATTCAAAATAAAGAATGTCTTGGATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416392 lncRNA downstream 22542 10295022 ~ 10295694 (-) True G366302
TU416369 lncRNA downstream 33598 10282935 ~ 10284638 (-) True G366279
TU416271 lncRNA downstream 161630 10104010 ~ 10156606 (-) True G366199
TU416295 lncRNA downstream 193772 10123523 ~ 10124464 (-) True G366215
TU416206 lncRNA downstream 346685 9970962 ~ 9971551 (-) True G366140
TU416363 lncRNA upstream 3334 10333768 ~ 10334422 (-) True G366277
TU416405 lncRNA upstream 70046 10400480 ~ 10420621 (-) True G366314
TU416463 lncRNA upstream 102207 10432641 ~ 10434070 (-) True G366368
TU416580 lncRNA upstream 243140 10573574 ~ 10575091 (-) True G366472
TU416548 lncRNA upstream 250894 10581328 ~ 10584712 (-) True G366448
XM_036976751.1 mRNA downstream 148 10303641 ~ 10318088 (-) True LOC110523172
XM_021601624.2 mRNA downstream 138147 10127268 ~ 10180089 (-) False map3k1
XM_036976748.1 mRNA downstream 138147 10127268 ~ 10180089 (-) False map3k1
XM_036976749.1 mRNA downstream 138147 10127268 ~ 10180089 (-) True map3k1
XM_021601623.2 mRNA downstream 138148 10127268 ~ 10180088 (-) False map3k1
XM_036976754.1 mRNA upstream 44677 10375111 ~ 10395549 (-) False sh2d4a
XM_036976753.1 mRNA upstream 44677 10375111 ~ 10395552 (-) True sh2d4a
XR_005051636.1 mRNA upstream 138832 10469266 ~ 10475168 (-) True LOC118964559
XM_021601645.2 mRNA upstream 312423 10642857 ~ 10643948 (-) True LOC110523178
NM_001281394.2 mRNA upstream 332186 10662620 ~ 10663665 (-) True cd209a
TU415770 other downstream 1128138 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 1267528 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 2014053 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 3592256 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 3766562 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 1803618 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 2375132 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 2375132 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 3876756 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 4096904 14427338 ~ 14428591 (-) True G370635

Expression Profile