RNA id: XM_021601634.2



Basic Information


Item Value
RNA id XM_021601634.2
length 7828
RNA type mRNA
GC content 0.47
exon number 17
gene id psd3l
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10445084 ~ 10584743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCGCCAAAAAATCTCAGTTTGGGGTACATGGAGCGAGAGAACGAGGTAACAGAAAAATAACGGAGAGACCACGGGAAGCACACCTTTGCGCGCATGTAGCAAGAAGTTCCGCAACGTTACATGGTATTTAATTATCTCTCTCATACACGTACATTTGAAGCCCTGCTGGATCTGACCGCTGTTGCCTTTGCAAGAGATTTTGGACACAATGATTCAAGAGTGAAGGTATACTTTCATGAAATGACATATGTAGAACTGGCCTTGGGAACCCATCTCCTCTTTCACTGAGCCCTCTGCAGGGCCGTGTTgccccctctcacccccctcctgCAGCACACCAAAAGATCCCCCTCCCTTAGAGGAAATGGCCGATCATCATCATCAGGTTAAGACTTCCTTCCTCTTTATTCGACTGCAGTCGCCCTCTAAGGCCCATGACCTGCCGTATCCTGCTGACACTGCCAGCTCCATCGCCACAGAGGAAGGAGGGTCGACGAACAACTCGGCTAGAGCTATAGTGACATCCACAGCTGTAGCCGCAGCACCCATCCCACCTGACCACATAGAGGACTGCAGTGTCACAGCCTTGAGAGTAGACATCAACTCAAATCAAGAAGTAGACGaaaaagcaggagagagaggggaaacatCTGATTATTCAGCTCATGCTGGAGATGTGGCTTCGGTCGTCTCAGGAGACCCTCAGACTCAGAACTACCAGAACTTATTGTTGAAAGCTGATCTGGAATCAGTGACTGGATTACAGGACCATAGTCTCACTACCTCGGAGTCGGATTTCCCTGTTTGGGTCCTGCGGGAGGACAGTCCTCGGACAATGATGAACAAGGACAATCAACAGCCACTAGCGGGGACACCAACCATCGCCACCAACCCAGCACCCCCCTCTCAAGCTTATTCTGCAGCACCACGAGTAAGCTTCCTGCACCCAGCAGAAGGATCCGTGCCCGACACCCACGGGCCCAAGGCCACTGAGATGGAGATGGACAAGCCAAGCCAGAAGCCTTTCCACCAGGCCCCGGCCCCAGCCCCAGCACCTACCCAACCCAACGTGGCTCCCAGCCCCCATTGCCCCAGCAGCACTAACAGTTGGGTTAGCAGTGCAAAGCAGAAGGAGGCTGGTGAGAAGCCAAGAGGTCCACAGAGTGGTTCACAAGTGTTCCTTAGAAGTCCAGAAGAGCGCAAGACCTTTCTGTATGCAGTCAAGGAGAGGTCCTCAAAGGTACCTGGAGACACGTACAGGAACGCAGTGACAAGGAGTCTCTCCACATGTATAGCTGTCACTCAACCCAGTGTTGTGACCTCACCGGCTTCTTCTTCAGAGCCTTCTGTGGTGAGCTCAGCTATGTCAAAACCCACAGTCTCAACAGTTGCTGCTCCATCCTCTGTGATCAGTGCTGCTCGTCCCTCCATGATAAAGCCTGTTCCAGCTCAGAAGGCTGAAACGTTTGTTTGGGTTAACAGCTCGTCTTCACACGCTCAAAGTGTTGCGAAGGCCAAGTACCAGTTTCTCTTTGGAAAAGGAGACGAGACCAGCTCTACTGAAAGCGTTTCAGCATCAACCTCTCACGTCTTAGCGGACGAGGGGAGTAGTAGCACCAGTCTAGACGTCTGTCTCCAGGACGATGACATCGATGAAACCTCGTTGTTCCTGGAGATCGACCGTGAGCTGGCCAACCTGCTGAGCGGCCTCAGCGCCAGGAGCCAGAATGCTCCAGCCGCCCACGCCCAACCTGAGGACAGCCTACACCCAGCGGACAGTAGTGAACAGCAGAGCGCAGCCATCATGATCCCCTGTAGCGGTCAAAACGGGGCCTCGCAGGATGTGGCCAGCCGGACCTCAGAGAGAAACGGTGAGGGGGAGGAGACCAATGTGGACCTGGACATGTCTGGCCTGGGCCTTGTTCCACCGGGAGACCCACTCCTCTCGCCCACCTTCCTCCTGGACTCGTGGACGGAGGCGCTGCTGAAAGATACGGCTTCCCTGAGCTCTGCGGCCCAGAAGGCCTTGGGCGTCTCCACCGTGGCGGCCGAGGTAAACGGAGACTTCAGGAATGCGCCCGCTGCGAACTGCCAAGAAAAAACAAGTGCTGGCCTGACAGCTGCTGCATTCACATCTGGGCCATGCTCAGTGGTGGGTGAGGTACCCGTGGTGGACCAGTCTGAACCTACCAGGAGGGGTTCAGAGGCAGCGACCGAGCCTGCCGGAGGGGGGCTGCTCCTGGACGAGGAGTCCCTGGAGGAGTCCAGTAAAATCCTGGCCGAGATCCCAGGCATCTTCACCGCCTTCCTAGACGGGGGCCAGCTGAGGGAGAAGCCCCCTAAGAAACTGCGATTTGCGGAGAGCCGGCCAGGGAGCACGACGACGGTGGTGGCGGCAACAGACGTTTGTGGTCAGATGGGACATGAGCGAGGTAGTGAGGACTCGGAGAAGGGactggagggaggtaggagctGCAGCAGTCTGAAGGTAGAGAGCTCTGTGGACAGTCTGAGTCCTCTAGAGAGACTCCCCTGCCGGCTGTCCCTGGAGGACGAGGTGTTCCGGGTGCTCCCTGACATATTTCTGCACCAGAGCCCCGATGGAGACGCAGCACGGGAGCCCAGCTCAGATAGGAGTACGAAGACCAATGGCAGCGAGGACCCGTCGGATAACCGGGATGGCAAGGAGACATCGGAGAGCCAGGAGGCCACCGACGTCTTCAGCTCGCAGTTCGAGAGCATCCTGGAGTCAGACCGTTTCCGTAGCACCCTTTACAGCAGCCTGGACTCTCTGGATGCCCTATCTTCCTCGGCTGACGACGAGGCGGACTCGGGCTTCACTTTCGACATGCCCCTTACTCCCATGATCCAGCAACGCCTCAAGGAGACGGGCCACTTCGTGGAGTTGTTGCCCGACGCGGGGCGCCAGCGGGAGCGCCAGGAGCTACTCAGCGTCACGACCACGGGGAAGGGCGGGAAAGCCGCCCTGGAAGTGACGTCTTCCTACCTAGAGGAGGTGGTAGCGAGTGGGGACCCCGCTTTCAGCGGCCAATCAGATAAACATTCCAGCGGACCCCTGGCCAATGGGGTGGAGCGGGACCCAAAGGACTGGCTGCACGGCTGCCTGAGcAGTGATGCAGGGCTGAAGACGGCTCTGTCGGACTGGGACTCAGACATGGGCAGCACGGAGCGGCTGAAGGACAGCACGGACACACTGCTCAATGGAAACCGAGGAGACCAAGAGGGGGCCCGGCGCCTCGCACGACGGCTCTACCACCTGGAGGGCTTTCGCCGCTCCGACGTGGCCAAGCACCTGGGAAAGAACAATGACTTCAGCAAGATGGTTGCTGAAGAGTACCTTACATTTTTTGAATTTACAGGGATGACATTGGACCAATCTCTCAGATCTTTCTTGAAAGCTTTTGCACTAATAGGCGAAACCCAGGAGAGAGAACGGGTTTTGATCCACTTTTCCAATAGGTACTATCAATGTAACCCCACCGTCATCTCCTCACAAGATGGAGCCCATTGCCTTACATGTGCTCTGATGCTGTTGAACACGGACCTTCATGGCCATAATATCGGGAAGAAGATGACGTGCCAGGAATTCATCAATAACCTGGAAGGGTTAAATGGAGGACAAGATTTCCCCCGAGAGCTCCTAAAGGCCTTGCACAACTCAATCAAAAACGACAAGCTGGAATGGGCCATAGATGGCGATGAGCTGAAGAAGTCTCTGTCTGAGCTGGCAGACAACAAGGACAATAAAAGTATCACGCGGATCAGCAGTGGCAGTAACCCCTTCCTGGACATTGCCCACGACCCCAACGCCGCAGTCTACAAAACAGGCTTCCTGGCCCGCAAAATCCACGCCGACATGGACGGCAAGAAAAcaccaaGAGGAAAGCGAGGCTGGAAAACGTTCTATGCTGTTCTCAAAGGAATGATCCTCTACTTGCAGAAGGATGAGTACAAGGCTGAGAAGGCCCTCTCAGAGGAGGACCTAAAGAATGCCATCAGCATCCACCACGCCTTGTCCATCAAAGCCGTGGACTACGAGAAGAAGCCCAACGTTCTCAAGCTCAAGACAGCTGACTGGAGGGTCTTCCTTTTCCAGGCCCAAAGCCCAGAGGAAATGGACTCTTGGATCAGAGTAGTCAACTCTGTGGCGGCCATGTTCTCTGCCCCCTCGTTTCCCGCCGCCATTGGCTCTCAGAAGAAATTCAGCCGTCCACTGCTACCGGCCACCACCACGAGGATGTCACAGGAGGAACAGCTGAAGTCTCACGAGGCAAAGCTGAAGCACGTCTCCACAGAGCTGGCAGAGCACAGATCCTACCCTCCTGACAAGAAGGTTAAAGCCAAGGAGATCGACGAGTACCGACTCAAAGAGCACTACCTGGAGTTTGAGGAGAACCGCTATGAGATGTACGTCAAGCTCCTGAGGGAGGGCGTGAAGGAGCTGCTCATTGGCAAAGATGGCGACGCGGGCCTCAAGAAGTCCCAGTCCAGCCCCTCTCTCAACCAGGAGGGCCAGCCGGCCGCGGCCAAAGTCAAACGCAACACCTCGGAGAGGAGACCCGAGACGCCGCCCAAGGTCACATAGGAAGCTACCCCCCCTCGCGAGCCTGTGAAAGAGCCATGAATACGCAACAAAAGTGTGTGAATATATTTTATGTAATTTATTTATCTGGCCACTGTTGTAACAAAAACAGTTGTGTAAAATGTAAATGATGAATACTCGTCCTTAAATTGACTGGCGTAGCATTTTTGTATGGAAACATTGCATTATATGTTTGTGGTCCTTTTattttgatgttgatgttgtcatTCTTGTATTGAACGTAATATTTTTTGTGACGCATTTGACTCGATTGCTTTATTCAATATCGCTGTATTGTTCCTTCCTCTCATAAAAACAATTTATTTGCCTTTCAGTCAGGAGAGAGGATTTTTCTTGTCTCCAGTTTAGTGGAATTACCAACGCTAGCTCTTGGATATATAAAtagtagctagatgtagaataGTCTTACTCAGAAGTTTTTATTTTGATATGTAGTTTAAGTAAATGTTGGACATATTGAACCAGTTAAGTTGAGAGTATTTTACACAAATATGGCTTCCATTGAGAATAGGCAGGTGATTTGGACATACAATTTCCTCCCTGCTTTTCCTCATAGACCTTTTTAAGGTTCCTTTCACCTGGGAATGTTTATTTTTCATACAGAAGATGCACCAAGGTGTAAATCCTGGAAAGGGATTAATTGTGGATCTAAAAAATGTGGTTAGGATCTTCAATCTCTTGCCTCTCATTTACAACAGGAATAACAACCCCAGATAAAACACAGTAATGTCCTTAGTTGTGTGGAAGGCTGCACTATCATGTTAGAAAACGCAGTTCAAAAGCGTTCCAATCCCTAATTTTGCACATTAACAATTTGGGATGTTTAAACATATTCCCCAGCTGCATCCGTATCTTTTCAGACTGCAGTATTTCACTGACGTTGGACTTAAGATCAGAGTTTATGCAGCTGagccatttatttttttatcctttaTTGCAAAAAATATACTTCTGCTTTTTTGAGTAGTGTAAAGACCAATGACCCTTGTCTTTTCTAATCGTATGTGTTTTAGATTCTAAGTTGAAAACTATTGTTGTAAAGATCAAATTTAGTATTTATAGTGCACTTTATAAATGAGTTCTTTTTGGATATTATAGAGAGCTTTATAAAGGTTAGACTGCTATGTTTCTTTGACGTCACAGGTTTTTCAGGCAGaacaatttttttgtttttcttgaaGGTACTTGAGCGCGACAGTTCAGTGGGTTTTTGTCAGCTCAGCTCGTAATGTCGTCTTAGTTTGTTTTAAGTGGTTCGGTAGTTTTGCTGTCCTAGGTAGATTTGTTGATTTGACGAAGTTTCCTTTTAGGGAACTGTTTATAGATCTGTACTTTGCAATTATTGCCTTTTTCCAATGCTGGTGATATTACATTTATAATATCATTTACACATTTTCATTAGAAATATTACTGACATTTGAACGACATAAGCATTTAGTTAGACATTGGATTGTATGTCTAGACTTCCACAATGGACTTTTGCATACCAACATATGTTTTGTCCTTACCAAAAGGTTTGTGTTTTTTCATGTATTGAAGATTTTGGAAGGAATTTAGCTTTTTAACATGTTATGAAGAAACATTTGTAATGATGCAAAGCCAATTTGAAAATGTACTTGTTTTTGGAAGACATGAGGCTAGTACCGAGTCTTTACAgttcaaaaaaatatattgtttacttttaatgttttattatttacattttagtttaTAACTTTTTTATTTTCTCTTAAATTCTCTACGAAGACACCAAATAGAATGTGTTAGTAGAGCTCGATGGTAATAGCCAACTAAATATACCTATATCCGTAATGCATGTTTTTAGAAAAACGTTCTACAGTAgtttgtgctagctagctagtgtgcAAACCGTTTCCTTGGAAATGTTCTCCTCACCACATAGTGGCACTATTTGACCTGTACGATTATTGTGAATGTTAGTGAGTGTTTTGACATTGAAGCACTTAATGTAGACAATACATGTGGTACATTTATCAAAGGTTTCAAGTTAATATCACGAGACCTTAACAGCTGATTCTGTTATATAAGTGTGAGGATAGTATTTTTGTTTATATACAGAAGTCCATATGAAGAGGTCTACCCTTGAATTCATTTTGAATATAATATTCAATGTTTTTTATTCTTTTAACCTTTTGATATTTTATCGTAAGACGATGGCTGACCCCTTGAAGACATCTATAGTTAAAATTCCTCCGTAGTTTAAACTTAATCCCAGTATTTTCTTATGCAGATACAGTAATCCTTTGTTCAGACTCATTAAATGTAGGATTTAACATATTGCTGTTTATCAGTTGGTACACTTATTACATTTGCCCATTTTCAGAGGATTTTAAGTAAATACAAGCTTTTGTTGTAATGACACGTTAGCGTAATCTGTGTTTCTGAGTGGAATGATAAATAATCTACGTCTATATATGGAATCTGTGAACTCATTTTAAACACAACCATGTACTACTATCTTACCAGTGGATTGTGTTCATGTGGAACGACTCAACTAAAGCAATTGACATGTCAAATCTCACCTGATGTCATTTCTGATTTGATAgtagatggtctggagaaggagTAGCGAAGACTGCACAGTAAATGCGTCAACATGTGACATTTTCCAATTTAAGACTAGCAGTGATCCTTATCAGGTATCTTGTTACCTTTCCCTTAACATTTACAGCATTTCTCCATATCACTTCAATGGAGGGCTTATTTTTAGCACTTACCTCTAATGCTTCTCTCAACCATATCTGGCATAGCCTCTGTACACTGGCGTATCACTTGTGTTAGAATAGACTCAATCCTGCACCTAGTCTGTAGACGTGAGAGACAGATTCTGTGCCCCTATAGTTCCCATGCCTCTTGATTGTTCTATACCGTAACAAACAATGCAACTAAGTCTCCTATGAGGCTCTTTGTCTCTACACGTACGTACGCATCAAATATCTCTGAAAGCTGTGATCCTGTACAATCCTTTGACTCTGTAAATGTTGTTAAATATAACTGTtgccctgtttttttttttttttttttttcccccaaaggCCCAGGATTGCATTGTTTGGTTGTTCAAGTGATCTCTTCTTTGGCCCAGAGCGTGTCTTACGCCCTTAGGTCAGGATTGGTAACACTATGTCAGTGGTAATACAACTGTAGGTGGTTTCAATTAATAAAATACTTTACTTAATTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU415399 lncRNA upstream 23819 10367329 ~ 10421268 (+) True G365405
TU415438 lncRNA upstream 81779 10362462 ~ 10363308 (+) True G365440
TU415419 lncRNA upstream 110660 10333757 ~ 10334427 (+) True G365422
TU415387 lncRNA upstream 123892 10320410 ~ 10321195 (+) True G365397
TU415372 lncRNA upstream 138628 10304469 ~ 10306459 (+) True G365382
TU415572 lncRNA downstream 8038 10592781 ~ 10593632 (+) True G365570
TU415694 lncRNA downstream 193208 10777951 ~ 10779474 (+) True G365686
TU415719 lncRNA downstream 234819 10819562 ~ 10821791 (+) True G365709
TU415731 lncRNA downstream 247884 10832627 ~ 10834462 (+) True G365720
TU416792 lncRNA downstream 279459 10864202 ~ 10864886 (+) True G366663
XM_021601630.2 mRNA upstream 24460 10402095 ~ 10420627 (+) True LOC110523175
XM_036976752.1 mRNA upstream 78386 10341232 ~ 10366701 (+) True slc38a9
NM_001281326.1 mRNA upstream 144841 10283000 ~ 10300246 (+) True gp130
XM_036976750.1 mRNA upstream 163737 10262705 ~ 10281350 (+) True ankrd55
XM_036976747.1 mRNA upstream 320551 10108872 ~ 10124536 (+) False LOC110523169
XM_021601644.2 mRNA downstream 41166 10625909 ~ 10637085 (+) True fut10
LOC110524950 mRNA downstream 69414 10654157 ~ 10656239 (+) True LOC110524950
XM_021601656.2 mRNA downstream 335328 10920071 ~ 10928472 (+) False purg
XM_036976769.1 mRNA downstream 346793 10931536 ~ 10938611 (+) False LOC110523183
XM_021601657.2 mRNA downstream 347524 10932267 ~ 10951201 (+) False LOC110523183
TU415150 other upstream 595933 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1215856 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1598971 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2525522 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2752573 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 391939 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 840899 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1293586 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2523953 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3180504 13765247 ~ 13769296 (+) True G369763

Expression Profile


XM_021601634.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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XM_021601634.2 Expression in each Bioproject

Bar chart with 6 bars.
XM_021601634.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.