RNA id: XM_036976767.1


Basic Information

Item Value
RNA id XM_036976767.1
length 8311
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110523183
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10931536 ~ 10951201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gCTGAATTACATGCAGTTTGCCAACACTGTCTGTAGTTGACTATTATAGCTGTTGTAATTAGCATACCACCCATGAtgttagtgtatgtgtgtaggtcagtgtgcTGCAGTGCTTATCCTTCAGATCAGTACATTTTCCACGATTCAACATGTTGTTCAATATAGGGGAACTATTATAAAACGATGAACAGCTATTTAACAACAATTAAAGGGCAATTGATTGTGTATTCAGTCAAAACCAAATCTGTCAGCTGTATATGAACAGGATTGGAAAATGATGTCTTCATTTTGGTGTCTTTCAGTAGAatatattagtctttgtggtaAGAACCTATATATGCAGCTATAGGAGGTGTGAGCTGTAGCAGTGGCGGGGACTTCCTGAGCCTTTGCAACTGAGCATGTGACTTTGAGGTCAAGCCATTTCCTCCTGCAGTAACCCTTTGCAGAGTGTCCCCTTAAATTGCAAGTACAAATTGTATGACACTCACATTTGAGTGACAAATGCATCTGAGACAAGCTTGAAGATTTTTATCCACAATTCTGAGTATGGGTGATGTTCTGGATTAGGCCAGCACCATGGAGACACTCGGTAGCAAGAGAGAGATGGCACTTCCATCCCGAAGCTCTTCCCAGGCAATAGGAGCTCTTACCCTGAGCTCTTCCCAGGCAATAGGAGCGCCGACCGTGAGCTCTTCCCAGGCAATAGGAGCTCCGACCGTGAGCTCTTCCCAGGCAATAGGAGCTCCGACCGTGAGCTCTTCCCAGGTAATAGGAGCTCCGACCGTGAGCTCTTCCCAGGTAATAGGAGCGCCGACCGTGAGCTCTTCCCAGGCAATAGGAGCTCCGACCCTGACGTCTTCCCAGGTAATAGGAGCTCTGACCCTGAGGAATTTCACCATTcccaggaggaagaggggagatggAAAAGCTCTTTTGGATGTCTGCCTCAAAGAGAGCAGGGACTATAGTCTGATACAGACAACTCTGAATGAGTCCCGATTGGACATGGGCAAGGAGATATCCTTCAGCTGGCAGTGGGATGATGTCACGCTAATACACAACGAGGAGCTACTGCGAGAGTTCTTTGAAAAAAGATCTGAAATGCGTTTAAAGGATAGACACGTCAGAGAAATGGAGGAGAGGTTCTGTTTTTTAGTCACCTCTGACCAAAAAGCTAAGCAAATGTATCAACACGGACTGAAGGTTGAGAACACAGATCAACACTCTCTGGGAAACCCGTCATATGGAGTCTATTTGCACAGGCACGCTGATGTGGCCCTGAAAAATATCAGCGGCAACACCCCTGCTGGAAAAATCCTCATCATTTTCAAGGTTCTCTTTGGCAAGGTGAAAAAAGTACCTCCATGTTATGGAAGGAACAGCACACATGATCCAACGGTGAATTACGATTGTCACGTGTCCAAAGACCCCGCTGTCCCGAGGGACAGCTTGTCTCAGCAAGTTTTGAGCTCGTCAGTGTTCCTGTTTGACTACAACGAAAACCAGGAGCTAAAACAGAGACCAAGGCAATGTTTGCCATATGCTATGGTTTCATTGGTTCCTTCTGTAAATTCTTCTCCGACTAGCACTCTAGTTCCATCTGTAAAACTGGGGCCAAAAACAAAGGATTCAGCGGCATGTTTGGAAACCTGCACCGTGGCTCAAAGAGTGGGTAGAGGTCAGAATGCGACCGTGACATTCAAACATTTTGGGACAACTGAAAGTCCATTGCCTGGATACAGATGTCAGGGATTTGGAACAAACCCCCCATTCCAAAGAGGTGATCAACAGAACTTCCAAAACATTACATCAATCGCAAACCAATTGTATCACAACGGAAGTGACCAACCCCCACCGCCTCCACTACACATTAGTCCCTGCGACCAGCCCCCACCACCTCCACCGCCCTTGAGTTCCTGCGACCAGCCCCCACCGCCCTTTAGTCCCTGCGACCAGTCCCCAGCGCCCATTAGTCCCTGCGACCAACCTCCAACTCCTTTTAGTTCCTGTGTCCTGCCCGCATCACCCTTTAGTTCCTGTGTCCAGCCCCCATCACCTTTTAGTTCCTGTGTCCAGCCCAAATCACCCTTTAGTTCCTGTGTCCAGCCCCCATCACCTTTTAGTTCCTGTGTCCAGCCCCCATCACCCTTTAGTTCCTGTGTCCAGACCCCATCACCCTTTAGTTCCTGTGCCCAACTTTTACCACCTTTTAGTTCCTGTGTCCAACCCACACCGTCTCCATCACCCTTTAGTCCCTGTGACCAGCCCCCACCACCCTTTAGTTCCTGGGCTCCTCCTTTACCACCACCATTCACTGGTTCAATTACCTTCTTGGAAGACAATGGACTGGTTACTGATCCTATACATTTACAGATCCCAAGCCATGCTGGAACAGCTCAATTTGACCACAATAAACCCCACTTAGGTAACCAAGTTCAGTCTTGTCAACAAGTTTCGAACACCCTGGCCACGAACCAGGATAACTTATGGCGACAGTCTACATCTGCAACAGGTGCATTGGAACCAGTCTCTACTATAGTTTATTCTTCACGTGTGATTAAGGATCCCAGATTGTCGGCACGAGAAACTAACAATATGCAGAGATCGATTTCAATGGAGTCAGAGAGCGGTCAACAAACAAGTACCTCTGTCTGCATATTGACCGTGAAGCCAGAGCATAAGAATCTCCAAAATGTACCAAAACAGGTGAAAAATCTCAGGGAAACTGGAAAAAAGAATGATCCAAAACCATGCCAGCCTGATACACCAATAGATTGTTCTACTGCTACTTTGGTGAATATTTCAGCTCCATCCTCTGTGATACCTACAACTGAGAATCAGCCATCGTCTAGAATGCTTAAAATGAAGTTCCAGAAGTATTCTCCATATTTTCATCTGAccaaagaggagaggaaggcaaaAATTGGTTCTCTACAACATCTGTCATTTGATGAGAAAAATACATTATTAGAGAGAACCAATTTTTATGCAAACTATTTTCAGAAGTCCAGGTGTCTACTCAATCAAAATGACAAGGTCGCCACAGTCGACCCTGGGCGGCTATGTAAACCAGGAAGTATAAAAAGATGCTTGTCCAGCACAGACTCAGTGGAGATGTACAACAGTCCTCAAAAGACTCATGAGGACAGTGGTGCATACTTGCAGCAGCAGGTGAGACAACATCATCAGCCCCAGTACACCACAAATGGTGATCAGAGTTCAAAACCTATCCCAGAAATTTCAGCCCATAATCCATCAATTGTCTGTGGGGCTGTGGAGGAAATTGTGGCCCTTCAATTTGAGAGGAACACAGGCAATATGGAACCAGAAGACATGAACCTTTGCAGCCCAGAATCCACTACTACATGTCTCACAGAAACGGAAGAGGATGTGCACAAAGTTACTGTGGAACCACAAGATGAAATGGCAATGAAAAATGACTCACCGATTCCATTCCTTCCCCAGACTGTCAACCAAACTGCAACCTCTGAAAGCCGGCAGGAAACAGAGGTGAGGTCCAATCTTAACTCAGCAACAGAGGAAAAACCTCAGGATGCTCTAAATGAAAACTCTAATGCAAGCAAGCAGAACACAGAGGCAAGCTCCAAACCAAATTCCATAAGAgatgaaaaaaatctaaacattGTACCTGAAATCGctgagggaaacagacagagcaGAGATGTGAAGTGTGAACCAATCTTAgaagagaaaaacaaaacaaatgctgTAAGTTCAGTGGATGACACAATGGTGAACGAAAATCCCTCAGAAACAAGGTGTCCAGTCATTTATGAGAGCCATACTGATATCATGGATGCTTGTGAAGAGGTTTGTGGTACGGAAACATCAGAGGAAGTTATGAGTGTCAAGGTCTTCTGTCCTGGAGTCATGTCTAGGCAAAATCATGAAAGGCTTTTGCAGAAAGACAGAGAATGTTATGAAATTGGCCAACATCAACAAAATGAATCCAATACATTTTCTACCTGTGGTGACTTAGCTGATAATACTGAAGAATGTCAGGCTGATGATTCAAAAGCCAAAGATACAGTCTACAGTTTCCTGTATAACAGGCTGCAACTCAGTGAGCTCTTTCTTTCACCTAATCAGCATGGATCATGCTCAATTTCTGGTAAACATTACCTTAAACCAAAATGCAAAGACAGTCCTATGGACACCAATAAATCACTCCTTCCGTCCTGCAACCCAAACCAAGTAGACATCGGAGAGGGATGTAACCTTCGCATCACAATAAATGCTGATAGAGAATTGTCCGCTGTCACGGAATCCCCCTCTCTGTCCAAGAGATTTTCAGTGTCAGAATGTCCTCAAGGAACTCAAGCCTCACCAACTGTACAGGAAAATGAAAAGTTTAGCAACAACAGCATTATCAGTGAAAACACACCCATTGACGGTGTTCTGAAAACATCCACCTACTACACCACCTTCAACAGAGCACATGCCCGCAATGCCAAATTAATCAAAATGATGGCAGAGAAATACAAAGGGAAGGAAAATGCTTCAGTGAGGATAATGAGAAATCATCAACATTCAAGAGTGAAGAAGAAATTGATTGTTGAAAAATCCACCACTGACATTCCATACTCAGAAATATCAAGATCATCCCATAAAGCCATTACAGGCCATATGCAGATGCCATTTATGCAGAGGGAAAAAGACTGTTTGAATGTTTCCCACAAAAACTTGAAACGCAAAACCTTTTTCCCCAATAAGGTCACAAGAAATGCCAGAGAGAACAAACACAAATCATGTTTTACATTTAAATCAAAGGTTGCAGCTCAGAAAATTTCTGTGTCAGATGACTTAAAGACCTCAACGCGAGTTCCCATAACATCAAAAAAAAGCACTATCCTGAAGATGTTAATAGATTTTAGGAGAAAAAAACGTTGGGGGACATTCAATCACAACAGAATGTACAGTCAAAGGAATGTGTGCAATGCTCCTGCAAAGTATATTACTTCCAGCCCAACGTCCGATGATAATAAACATCTGAGAGGTAATCGTTTCGAGAAGAAACATCTGAAGACACCAACGAGAGAGTTAGAAACAAATATGTCTATGAGAGATGGAAATGAAAAGATCAACGAGGAAAAGCAGATAGCTGATGCTGTTAACACAACCTTAACTTCGTCGACCATAGATATAGTCAATGAAGAGGCTGCAAAATCTACTTCTGGGAGCACTGCGAGCAACTTTGTGGAAGACATTCAACACATTGAGGAAGCAAAGGATCTATCTAAAAGCAGAACTTGCAACGACGGCAAGCCACATGACACAGAAACATCTCAGGAAACCCAGAGCAATTGCACTTCCCTTCAGAACAAATTACCTCCACCGAAATGCACCAATATCGTGGCTGTAAGTCAAGACAATGAGGGAATAACTGAGTTTAAAAAACATGAGGTGGATCTGCTGAAAGAAAAGGCATTACAAGCTCATACACACTCTAGAAAAGAGGTGGAAGAGGCCAACAGTGATATGGCGCCTGCTAAAGAGATCATTTCAGCTTCTGAGAACATGGAGTTTCCCTTAGATGCTGCCATCAAGATTCTTTGTGGCAGTGAGTTAAATTCAAACACACCCAAACCACAGGAAGAGATAGCTCGGGTGTTGCAGCACAAGTATGGTCAAATGGAGACAGAGAAAGCAGACACATCAGATAGAACACATTACTGCAACCCACTGGAACAAGAAGACACACCCTCCAAGGAAGTGAAACTCATCAATAGATTAAGAGATTACTTGACAAATTTTGAGTACATAGTTAGGAAACCCGAGCCAAAAACATCAGATACACTCTGTGAAAATGAGAAGAATTTGCCACAGATTTGTGAAACTATCCAGAATAATGTCAATGACCATAAGGAGAAACCAGTTCATCTGGTTGTCCTTGACAGGGTGGAGTTGCGCAATCTGAGACCTAATGCAATTCCTTTCCCAATAAAGATATGCACTCCAATTATCAACACAGACAATGACCTGATTCATAGTAAAGAACAGGAACACAAGGAGAAAACAAGAGGGAATAAAACGAATTGTTACAGAATTCCTTGCATTAGCCCTGATAGTACTTCCATGTTGGAAGTCCCTGAAAAGTCCACTCAAACTCCTATGGACAAGAAAACAACTGAAGCAGAAATCTCCACAAGTGTGCCTGACATTAACCATGGGATTACAATTGCAGAAAATTATGCCTCAAGAGAACAGCAAAGACAGCCAAATTGCACTATTGATGCAAACAACATGATCATGCTCAAAGCACTTGCAGAAATAGAACCAGAGAATTCCGAATTTTGTAAAACAAAAGAAAACACCAACCAGAAGCCAAAAAGCCACATTGTAAGGGTGAACACTAAGACTTTTCATAGAAACTTCAGTGTGGCTGATATCTCAAATGCACTAAAGCATGGAGACAAAGTAACTTCCTTGGCCGAACTTTGCCCGTTGCGAACTGAATGCAAAGTCATGATGCAGTACTTCATCTTAAACTTTGAGGAAAAACAGAATGTTGAGGTCAATAGAACTATCGTCTCAAGAGATCAGATTTTAGAGCGATATCTGGACCGTCCTCCTGTACCAATGGAACTGAAGTACGAAGCGTTGAATTCTTTCCTGGAACTGCAGATAATGATGGAGGCCTGGCAATTTGTAGATAACAAGATGCGATTTTTGAGTGGACAATCTACATTTAGGAGTCTGCTGTGGTACGATCCCACTCTGTATGGGGAACTCTTTAAAGGGAAGGTGGGATTACAGCAGCAGTCCTCTTTATATTCATCTTTCCAACAAAGCCTCATCAACGAAGGACCAATTGCATTGCAGAGGTACCATTTAGCTGTCTCTACATTGAATGAACAGCTGAAAAGGGCCCCAGAAATGTCTTATTACATGTATCTCAAAAGCAAAAGAGAGAGGCTGGAGATTGAGGCTGCATTACGAAATCCCTCAGACATAGAGAGTTTCTTCCTCTCTGTACCACTGTCTTGCATGGTCAATTTTGGCGACAGTGTGGAAAGTTTACAGAGGGTCCAGAGGCTTGTGACGACTTTCACAGAGACTCCTGCAGACAAATTAGAAGACGGATTCGATGTTGGAAAGGCTGAGCACCTTGCCATGGTGTTCCGATTTCTTCAGGAGAAAATCTACTATTTGAAAGCTTGCAGCAACACGATGGTCAGCAAGACGTCTTGGTTTGGCATGGAACACATCCTGTTTGACGCTTCGAAGATGCTGGTGTGGAGGGACACGAAACAGACTGGGTCAGATGAGCTGCAGGCGAAATACAAGAAAGCAAAtccacaaattgtctatggggTGACTGAATCTGGTGTCTCACTGTTGCATACAAGCGTGTCAAAGAGGACCCAGCTCATGGTTAAGACTGGGAACACAGCACAGAGATTCAGAGGTCGGAGTCGGGGGATGCCGCCTATGGAGAACACTCGCTGTGCTGAGAAGAAATATCCTCAACATGGGTCTTTGCCGATAATAGACCTCACAAAATCCCCTAACAGGGATAACCCAGATGTATACCACTGGGCCACACCCCCAAGCAACCCTGCAGCCCATTTCCAGACTTGGACACACCAAGAAAACCTTGTCAAGAGCCAGGTAGTAAACTGGGGTGAAAGGTCACATGATACGCAAGCCATGGAGAGGAATATCCCTGCATCTTCCTTATCCCGACCTGTGCCAACATACCCTGAAATCAGGGCCTGTCTAAGGACTAGTAAAAGTGGGACAGTGCCAAACTCACAGATCCAGTTACCTGCCTCAATGGGAGGGCTGGGAAGTAAATCAGATGGGAGGCAGCAGTGGGCCGCGAGCTGGGTTCCACATAACCCCCAGAACATCACAGGAAGTGATCTGAGGCCAATGCATCCTCTGTGGATTGGTGTTGGGGACAATGGTCATCCCCCCATTGGGGAGCCTGTCCTCTTAGAGCAAACTAATCCGTCTTCCTGGTCTAGTCTGCCTTCTTCTCCTCCATCTGTACCAGCAGGAAATACAGCACAAAAATCTCTGCACTCCCTCCCAGCTCTCGCTACGACAAATAATTTCCCTCCCACATGTGAGCCCCTTCCTATAAATTACCCATTTTTCCTCCTGAATGGTCAGACCTATTCCACTGCTAATCCTGAATTGTCGACAGCAACTCTTGATAACAGAGGGAGATTTCCTCCCTATGTAGAGTAGTGCTGCTTCTTTATCAACTTTTATGGAACAGGTTTATAAAGCAAATAAGGACCTTTTGAATATAAGGAAGTGCTGGTGTTTCCGTGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416836 lncRNA upstream 2038 10930074 ~ 10930369 (+) True G366703
TU416837 lncRNA upstream 2677 10929445 ~ 10929730 (+) True G366704
TU416834 lncRNA upstream 3934 10924894 ~ 10928473 (+) True purg
TU416862 lncRNA upstream 14610 10917595 ~ 10917797 (+) True G366727
TU416861 lncRNA upstream 14976 10917127 ~ 10917431 (+) True G366726
TU416813 lncRNA downstream 1464 10952665 ~ 10952936 (+) True G366684
TU416874 lncRNA downstream 16125 10967326 ~ 10968081 (+) True G366739
TU416807 lncRNA downstream 53474 11004675 ~ 11005600 (+) True G366678
TU416810 lncRNA downstream 54533 11005734 ~ 11006030 (+) True G366681
TU416901 lncRNA downstream 60982 11012183 ~ 11012531 (+) True G366766
XM_021601656.2 mRNA upstream 3935 10920071 ~ 10928472 (+) False purg
LOC110524950 mRNA upstream 276168 10654157 ~ 10656239 (+) True LOC110524950
XM_021601644.2 mRNA upstream 295322 10625909 ~ 10637085 (+) True fut10
XM_021601641.2 mRNA upstream 347664 10498026 ~ 10584743 (+) False psd3l
XM_021601659.2 mRNA downstream 1815 10953016 ~ 10963722 (+) True ppp2cb
XM_021601661.2 mRNA downstream 22897 10974098 ~ 10984513 (+) False LOC110523186
XM_036976770.1 mRNA downstream 22976 10974177 ~ 10984513 (+) True LOC110523186
XM_021601662.2 mRNA downstream 33519 10984720 ~ 11004641 (+) True depdc1b
XM_036976772.1 mRNA downstream 74900 11026101 ~ 11418933 (+) False LOC110523188
TU415150 other upstream 1083253 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1703176 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2086291 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 3012842 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 3239893 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 25481 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 474441 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 927128 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2157495 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2814046 13765247 ~ 13769296 (+) True G369763

Expression Profile