RNA id: XM_021601661.2


Basic Information

Item Value
RNA id XM_021601661.2
length 2121
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110523186
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10974098 ~ 10984513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGAGCACGGCTCTGCCAAAATGTGGGAGGAGACATCTGCAGTGGATAAGTACTGTGCATCACCGACAGGCGAGTCATTCGAGCCAGGCCGGCAGCGACAGGTGTGTACCAGATACAAGAGGAAAGGGAAACGCCATCGTCGTCAAACAGGCGGTGCAACAAGAACAGTAATGGCTTTCGACTCGCTGCCCTCCAGAGTAGTCTTGCTCTATGATGAATGGCTTAAACTGGCTGATCCCAGGACAGAGAACTGGCCCCTAATGGCATCGCCGATAGCCCAGACTCTCATCGTAATCGCCTACATCTACTTTGTCACGACGCTGGGCCCTCGGCTGATGGAGAACCGCAAACCCTTTGACCTCAAAAATGCCATGGTCGTCTACAATTTCAGTATAGTGGGCTTCTCCATCTACATGATCTATGAGTATCTGATGTCTGGTTGGGCCAATGGTTACTCCTACGGTTGTGACCTTGTTGACTACTCCAGCAATCCTCTGGCTGTCCGGATGGCATGGACCTGCTGGCTCTACTACTTCTCAAAGTTTATTGAAATGTTGGACACAATCTTCTTCGTCCTCCGCAAAAAGACTAGCCAGGTGACATTCCTTCATGTCTTTCATCACTCTATCATGCCCTTCACTTGGTGGTTTGGAGTCAAGTTTTCAGCAGgtggTATGGGAACCTTCCATGCCATGTTGAACTGCTGTGTCCACGTCCTCATGTACTCCTACTATGCTGTGTGTGCTATGGGGCCTGCCTATCAGAAGTACCTGTGGTGGAAGAAATACATGACCACCATCCAGTTGGTTCAGTTTGTGATGGTGACTGTCCACATTGGTCAGTTCGTCTTCATGAAGGACTGCCCCTACAAGTTCCCGGTTCTTCTCTACATTGTTGGTCTCTACGGACTGATCTTCCTGGTTCTCTTCCTCAACTTCTGGTACCACGCATACACAAAGGGAAAGAGGCTGCCCAAGGTTGCGCAGAAAAGCAAGGCTCTCCAGAATGGCAATGGGGTTCACCATTCCAATGGGGTCGCCAAGGAGGCAACCAACGGCATCTTCGATGGCACAACCAACAAGGTCGCAAACTGCTTTCACCATGGCAATGGCATTCACAAGAAGGAAAAGTAAATGTTGCAGCCTCAGGTTTTAGTTGACGAGCTCAATTACCAACTTCCAGGGCTGTATTTTATATCCAAGTCTCCTTTTTGTTACACTTCCACCATTTCAGAGCGTATTCCCTGTTTTAATTGGTTCCAACTTTCTTTGTTTGTGCTAACAACTTTGTTATCACTGTTATTGAATAGAATCATATGTTCTGTTTGGCTATAGGTGGGTGAGTTAGTGCATGACttttgttcagaaatgtggttaTAGGGACCACTGCACATACCATTTTTCTCAGttacaaatgtaaatgtttttgtgCTGTAATATAATGTGCCTGGTAACAGGCTTTTGAGTATCGGTTTAAACAAGGTGATGATGCTTAATGTCTGGTGCAAACGGAGCATATAAATGGTCTTAGAGCTGCTCTGGTAGAACCTGAAGCCCTGGAATCAGTGGCATACATTTCACTGATTTGAGCTTTAGTCTTTTCATATGACAATCAGTTTGTAGTAAGCGAAATGCACTTCCTGAAATGCTTTATTGCTTATAGTATGCCAAGGGATCATACTTGATGTATTTTGTGTTAATTTAATGTTCACAATGTATATACATGTGTCTTTTTTTATGTTGCTGTTTGAAGGTCAAATGTACAGCAGACTATGTGAAGGCTGTCTGGGCTTTTAGTGTTATTGAAGGAGCTGACCAAAAATGGGCATTTCCTTTGTTTGTGCCCATGGTGAACGAGAACAGAACAATATTGTCTGAATGAAAGCGATTATTTTACTACTGCAGTCAATAGCAAATACTGTGTATTTTTTAGCTATTTGCTCAATATTGTAACGAATTCGGGTGGGTGGCCCCGACCGGGACTAGAATCCGAGTCCCgcgactgtcaagccaacaccttaaccATCACGCCAGGAGGTCCAAACCGCTTGACGAGGTCGCTACAATATTGTTCAAAAAAACAATCTGCTTTTATGTTGAAATAAATTATTTTTACCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416874 lncRNA upstream 6017 10967326 ~ 10968081 (+) True G366739
TU416813 lncRNA upstream 21162 10952665 ~ 10952936 (+) True G366684
TU416836 lncRNA upstream 43729 10930074 ~ 10930369 (+) True G366703
TU416837 lncRNA upstream 44368 10929445 ~ 10929730 (+) True G366704
TU416834 lncRNA upstream 45625 10924894 ~ 10928473 (+) True purg
TU416807 lncRNA downstream 20162 11004675 ~ 11005600 (+) True G366678
TU416810 lncRNA downstream 21221 11005734 ~ 11006030 (+) True G366681
TU416901 lncRNA downstream 27670 11012183 ~ 11012531 (+) True G366766
TU416948 lncRNA downstream 53538 11038051 ~ 11038367 (+) True G366786
TU416959 lncRNA downstream 64861 11049374 ~ 11051095 (+) True G366797
XM_021601659.2 mRNA upstream 10376 10953016 ~ 10963722 (+) True ppp2cb
XM_021601657.2 mRNA upstream 22897 10932267 ~ 10951201 (+) False LOC110523183
XM_036976767.1 mRNA upstream 22897 10932407 ~ 10951201 (+) False LOC110523183
XM_036976768.1 mRNA upstream 22897 10934632 ~ 10951201 (+) True LOC110523183
XM_036976769.1 mRNA upstream 35487 10931536 ~ 10938611 (+) False LOC110523183
XM_021601662.2 mRNA downstream 207 10984720 ~ 11004641 (+) True depdc1b
XM_036976772.1 mRNA downstream 41588 11026101 ~ 11418933 (+) False LOC110523188
XM_036976773.1 mRNA downstream 41589 11026102 ~ 11418933 (+) False LOC110523188
XM_036976775.1 mRNA downstream 129228 11113741 ~ 11418933 (+) False LOC110523188
XM_036976778.1 mRNA downstream 129230 11113743 ~ 11418933 (+) False LOC110523188
TU415150 other upstream 1124944 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1744867 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2127982 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 3054533 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 3281584 7690440 ~ 7692514 (+) True G362554
TU417154 other downstream 441129 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 893816 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2124183 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2780734 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 3271290 14255803 ~ 14259133 (+) True G370360

Expression Profile