RNA id: XM_036976773.1


Basic Information

Item Value
RNA id XM_036976773.1
length 6235
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110523188
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11026101 ~ 11418933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGAGTGTTAGTCTGTTTTGGTATTCCCTTTCGGAGTGTTAGTCTGTTTTGGTATTCCCTTTCGGAGTGTTAGTCTGTTTTGGTATTCCCTTTCGGAGTGTTAGTCTGTTTTGGTATTCCCTTTCGGAGTGTTAGTCTGTTTTGGTATTCCCTTTTGGACTATTAGGCTAAATTGTGCAGAGAGTGGATGTTTGTATTTATAAAAATACTTAGTTATTTGTTGATTTATGTCATTTGGGGGATTCGTGGCTGCGTTACAGCTGAGGGTCATCTTTGGGAGACGGAAGGGTTCTGGCAGCTTTGGACAGCGGGAGTGGGAGCAGTACCCAGGATGCTAAAGAATGAGAATTccagagaggacagaagagagagtGTTTCTGACGATGACTCTCCAGAGCCAGGTCTGGGCGTGGAGATGGAGACTGTCCAGGTGCGGAGGCTCTCCTGCCGGAACCTGCAGCTTCCCCCATTGGCCTTTAGGCAGGCGGAGCAGCGTGACTGGGCCCCGAGGCCAGAGACGGAGCAGATCCCTCGGCCCACTAGCCTCGCCCTCAGGATCCCCCCGCTCATCGCCATCACCTCAGCAGACACCAGCAGCTTCGATGTTGACAATGGCACATCATCGGGACGCAGCCCCCTGGACCCCATGGCCAGTCCAGGGTCAGGGCTCATCCTGCAGGCCAACTTTGTCCACAGTCAGCGGAGAGAGTCCTTCCTCTACCGCTCGGACTCGGACTACGACCTGTCACCCAAGTCCATGTCCAGAAACTCCTCAATCGCCAGCGACATcCATGGCGACGACTTGATAGTCACACCATTTGCACAGGTACTGGCTAGTTTGAGAACGGTACGGAATAACTTTGCTGCACTAACCAACTTGCAACAAGACAGAGCCTCAAACAAGCGGTCCCCTATGTGTAACCAACAACCACCCATCACCAAGTCCTCTTTCTCAGAGGAGGCCTACCAGAAGCTGGCCACAGAGACGCTGGAGGAGCTGGACTGGTGCCTGGACCAGCTGGAGACCCTGCAGACCAGACACTCTGTCAGCGAGATGGCCTCCACCAAGTTCAAGAGGATGTTGAACAGGGAgctgtctcacctgtctgagaTGAGTCGCTCAGGGAACCAGGTCTCTGAGTTCATCTCCAGCACCTTCTTAGACAAGCAGCATGACGTGGAGATGCCATGTCCACAGACGCAGAAAGAGAGGACGGACAAGAAGAACGCCAAGCCCATGTGTCAGATCAGTGGAGTGAAGAAGCTGCAGCACAGCACTAGCCTCTCCAACTCTAATATACCTCGTTTCGGGGTCAAGACCGACACAGAGGACCAACTGGCTACGGAGCTTGAGGACCTCAATAAATGGGGCCTTAATCTTTTTAAAGTCACCGAGCTTTCAGGAAACCGGCCTTTAACAGTCATGATGTACACAATTTTCCAGGAAAGAGATTTATTAAAAACATTCAAAATACCATTAGACACCTTTATAACCTACCTGATGACTCTAGAAGACCATTACCACGGCGATGTAGCCTATCACAATAACATCCATGCTGCTGATGTCACCCAGTCCACTCACGTGCTGCTGTCCACGCCTGCTCTAGAGGCTGTGTTCACAGACCTGGAAATCCTAGCTGCCATCTTTGCCAGTGCTATTCATGACGTCGACCACCCTGGGGTCTCCAACCAGTTTCTCATCAGCACCAACTCGGAGCTGGCCCTCATGTACAATGACTCGTCAGTCCTAGAGAACCACCACCTGGCTGTAGGCTTCAAGCTGCTTCAGGAAGAGAACTGTGACATCTTCCAGAACCTGACCAAGAAACAACGGCAGTCCCTCAGGAAGATGGTCATAGACATGGTACTAGCTACTGACATGTCCAAGCACATGAATCTCCTAGCTGACCTGAAGACCATGGTGGAGACGAAGAAAGTCACCAGCTCTGGAGTGCTACTACTAGATAACTACAACGACAGAATACAGGTCCTCCAGAACATGGTGCATTGTGCGGATCTCAGTAACCCCACCAAGCCCCTGCAGCTGTACCGCCAGTGGACCGACCGCATTATGGAAGAGTTCTTCAgccagggggacagggagagggagagaggcatggagatTAGCCCTATGTGTGACAAACACAATGCCTCTGTACAGAAGAGCCAGGTGGGGTTCATCGACTACATCGTCCACCCTCTGTGGGAGACCTGGGCTGATCTGGTGCACCCTGACGCTCAGGACATCCTGGACACTCTGGAGGACAACAGGGAGTGGTACCAGAGCATCATCCCCCAGAGCCCCTCGCCCGCCCCGGACGAAGCCGACGACGGCAGCGGACGTCCCCCCGGAGGGGACAAGTTCCAGTTCGAGCTCACCCTGGAAGAGGACGGAGAGTCGGACACGGAGAAAGACAGTGGAAGTCAACCAGAAGAAGACGAGGAGAATAGTTGTAACTCGAAAACGCTCTGCACGCAGGACTCGGAATCCACAGAGATCCCGTTGGACGAGCAGccggaagaggaggtggaggaggaggaggaggtggtagtggtggaggaggaggagggtgaagggGTACACAGGGAACCAAGTATGGCAgagttggaggaggaggatgaggagggagaggaggaaggggaggagggcgAGGAGAAGCAAAGAGCGGCCGATACATAGCAGCAGTAGAAACTGCGCGGATTGCCAAActgcgagagagagactgttgcGTTACAACGGCGAATCAAGGGACGAGGTGAATACTAGTAATCGCCACAATGTTGGTGATGTGGCATCATCGAGAGTTCCAAAGCGCACGTTGCACTCCTCAATCCCAGTCTTCTCCTCACTCCACTCCACCTGGAGGCGATATGGGGGAACAGACCCACACCTCCCCTCCCCCAAGACTCCCTCCCTTGGAGCGCCACACTTTTACACTCAGGAATATTTTAGTTGACTTTCTTGCCTCCTTTTTTGTTTACCTTCTGGTTCATTCGGCCTATAGGGAGCGAGGTGACGCCTTCAGTTCAAAGGCCAATCTCcacctcccacctctcctctatctcctacCACTTCCTGTCAACGCAGGAAGCAAACAGAAAGTGTTCTTTGACTCCAAGACTGAGCACATGGGCAACACACAAGATGCTTGGAACAGTCCTAACTGTAGCATCATGGGAGGACAGCCAGATGGGGGAAAGATGGATTGCAAGGTGACCTCTGAACTGCAAGGTGACCCCAGTCCACTAATACCATCTGAAAACCAATGAGGGATATTATAGGGAGAGACGGACAAAGACATACTTTGCAAGAGGATTTCAAAGAGACCTTTTTTTCTAAAGTTCAAGTCTTCCTTGAAACAAGACTGGTAGAAAACGCTGTTTTTGACCTCCTCAGTTTTTGTATTGTAGTAAAACTGAAATCTTTTTGTAGATAACTTTTgttaatggagagagagagagagagagatagagagcgagagagagagagaaaagagcggAGGAAGATGTTCAATTCATATCTTCTTCGTCATATATTGCATCCATTGAAacttgatattttttttttagaagaGATATGTTATGCCATAACATAATGCCTGTGGTCTTTCTGGGAATGTGTGCTTGTCCTGAGTGCATGTGACTAAGCTCTCTGCACTCAGTCTGCTTTCTTTTCTGCTTTCTTTTGCTCTCCTTCATCTTCACTCCCAGGTATTTCAGATAGGGGCATCTTAGATGAACATGCGTGGTTTTCTGTTTGAGAGCGTTGGGGTTCTAACTTTAATCTTCACTCACAGGTATTTCAGATAGGGGCATCTTAGATGAACATGCGTGGTTCTCTGTTTGAGAGCGTTGGGGTTCTAACTTTAATCTTCACTCCCAGGTATTTCAGATAGGGGCATCTTAGATGAACATGCGTGGTTCTCTGTTTGAGAGCGTTGGGGTTCTAACTTTAATCTTCACTCCCAGGTATTTCAGATAGGGGCATCTTAGATGAACATGCGTGGTTTTCTGTTTGAGAGCGTTGGGGTTCTAACTTTAATCTTCACTCCCAGGTATTTCAGATAGGGGCATCTTAGATGAACATGCGTGGTTTTCTGTTTGAGAGCGTTGGGGTTCTAACTTTAATCTTCACTCCCAGGTATTTCAGATAGGGGCATCTTAGATGAACATGCGTGGTTCTCTGTTTGAGAGCGTTGGGGTTCTAACTTTCTTGCAGCTTTAAATGTACCACCTCTTTTTATTTTTCAAAGTAGAATGAAGCCGGTTAACTAATGACCTTAAGAACATAATAATGGTATATAATATACTTAGGCCATGTTTCCATTTAAATATGACATGGTAGGTCTTGTTAACATCCTGAGTATGTAGTGATTTAGTTCTATCCAACCAAATATACTATCCAAATAGACTCTCCAGTCTATCTACACATTGTTAAATCTGTTTATACATCGGTGGTACATTTTTCTCAACTGTTAAGGATTATGAATAACCTTCAGTTAGCTTCCATAAACACTCATCAGTTATCAGTGATATCTGTAACACTTTAGCTTATAGTCACATGGCTATATCTTCTATATTTCATCATTTCAAAACTGTATTCATCTGAAGTACAAAGGGACTTGAGCTAATGATAAAACTGATGTTGTTTTACACCAAACAAACAACAAGGTTGTATTCATGTACACTCTATATGTATGGAAATATTTGTCACATGAAAATAGTGACTGTATTCTAAAGTGTTCCGACTCATGTATACCTGGTTGTGTTGTATGGGCTCTGGATCTGACCCTTTGTGTTGTAATACATGGATATCCCACGTCTCTCTTCAATTTGCCTATTTCAACTGTCTAGCATCCATCCAATAATGATTACTAAAATGACAAACACTTTGACAATATTTGCCTTTGTTctttttcattattattattattttgtcttATTGAATTTCACATTGGACATTGAGAATCACCTGCATAGTTTTAAAATCTACCTTTCACATTTGAGTAGTTCAtaggtatgtgtgtatatgtatataactGTACTGCTAGCATCAAAACCATTAACAGACTCTTCCATACATGTCATGCCTCATATGAGGACACAATCCCATATAATCCATGGTATTCAGGAAATAATTCCACTAAATTGAAGTAGTAGGACAGTAATTGCAGATGCTTTATGATTTAGATTTCATTTTGCAATATATTTGGCATTTTCAGGGGAAGGACTAGATATGGATGACTTGTCATTTCAAACCCGATATTGCTTTTTTATTTTTGCCAAAACaacttctccttcttcttcttcttcttcttcttctccttcttctcccctGCTGGACTTGCACAATGCAGCACACACCATTAAGTCAAGTGGTTTCTGTGTTGGTTTTTAATATttctttatttatatttattgatTTGGTAACACTGTCTTTGAGTCACATGTAGTAATGCATTATGAAGCCTCATAAAGGCTATTTAAGGAGTTGTGAGCTGTTATGAATGCttataaaaaatacatgttttattaaacctttatttaaccaggaaaagcccattaTTATAGTCTATTATGGGCGTGAAAGAAGGCTCTATGAATGCATCATATAGACACAGGTGGTTAATAGTGTTGCCATGGATTCTTTGTTTTTGTCACAGTTTGGCCATCCTAAGTAAGACAGCACTGTAGAATGCACAACCTGTAGCGTAACAACATGATGTGGACTCGCAAAACACACTATTTGTTCCTGTTCTGGTGATATGATGTAAGtagaccatagaaatagaatgactacaATAGTCACTCTATAGCCATATTTCTATGCTTCTAATCAACACTTTTGTCATACATGGGGAAACATGTCCACATTGAAAAGACTTGAACCTGGATTTTAAAGTAAAAATGTTAATATTTTATTATTGGATAATGGTATATTTCTTTACAATTTAATTTCTCGGCcatctttttgtgttttttttgcttGCCTCACCGGACGACCTTACCTGTTAATGGATTTTTCTCATTTGTCTTTTGTTTACAACCATGTATTTATTAAGCTGTACATATTGTAGTGTTGCATTCTGTAAATGACGGATTCTTACTCTATCATCCGATGGTGTTGGTGTATTTGGAAAACCTCTTGTTGAGAGAATGTTTATTATGATCCATACTTAACCCAATGTATAAATCTCTTCTGTACAAGAATGATAAAAGTGAATGAAATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416901 lncRNA upstream 13571 11012183 ~ 11012531 (+) True G366766
TU416810 lncRNA upstream 20072 11005734 ~ 11006030 (+) True G366681
TU416807 lncRNA upstream 20502 11004675 ~ 11005600 (+) True G366678
TU416874 lncRNA upstream 58021 10967326 ~ 10968081 (+) True G366739
TU416813 lncRNA upstream 73166 10952665 ~ 10952936 (+) True G366684
TU417149 lncRNA downstream 3644 11422577 ~ 11422801 (+) True G366969
TU417153 lncRNA downstream 6709 11425642 ~ 11428710 (+) False G366973
TU417158 lncRNA downstream 14734 11433667 ~ 11437320 (+) True G366977
TU417195 lncRNA downstream 68515 11487448 ~ 11488048 (+) True G367014
TU417630 lncRNA downstream 123665 11542598 ~ 11542839 (+) True G367420
XM_021601662.2 mRNA upstream 21461 10984720 ~ 11004641 (+) True depdc1b
XM_021601661.2 mRNA upstream 41589 10974098 ~ 10984513 (+) False LOC110523186
XM_036976770.1 mRNA upstream 41589 10974177 ~ 10984513 (+) True LOC110523186
XM_021601659.2 mRNA upstream 62380 10953016 ~ 10963722 (+) True ppp2cb
XM_036976768.1 mRNA upstream 74901 10934632 ~ 10951201 (+) True LOC110523183
XR_005051640.1 mRNA downstream 83710 11502643 ~ 11507284 (+) True LOC110524952
XM_021601667.2 mRNA downstream 88756 11507689 ~ 11513262 (+) True LOC110523192
trnaa-agc-2 mRNA downstream 182527 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601680.2 mRNA downstream 384987 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 413976 11832909 ~ 11854832 (+) False lmnb1
TU416883 other upstream 48950 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1176948 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1796871 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2179986 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 3106537 7918922 ~ 7919565 (+) True G362662
TU417154 other downstream 6709 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 459396 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1689763 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2346314 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2836870 14255803 ~ 14259133 (+) True G370360

Expression Profile