RNA id: XM_021601683.2



Basic Information


Item Value
RNA id XM_021601683.2
length 597
RNA type mRNA
GC content 0.42
exon number 4
gene id c5h5orf63
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11880306 ~ 11884575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAAAATGACAGTCAACCAATAGGTATCACCTACATTTGTGTTCCTTTTTCCTCTGTTTTGTCACGCCTGGTTGTCCTCTCATAGACAGACAATGCATTTGGTCTTGCCGAGGACTCTCCACAGGACAAAGAGTTCTGCTCATCTGCTTAGAAGACTCTTCTCCCAAAAGTACTTACCTACTTTAACGCTTTTTACCAAGGATCCATGCCCATTGTGTGATGAAGCAAAAGACGTCCTTGAACCATACAAACACAGGTATATTTTTCTGCAGGTAGATATCACACTGCCGGAGAACAAAATTTGGTGGGACAGATACAAATACGACATCCCAGTCTTCCATCTGAATGGACAGTTTCTAATGATGCACAGAGTTAGCACTTCACTCCTGGAGAAACGGTTGGCTGAAGTGGATGAAGAACAACAATAAAATTACTTTGCAATAGTGTAGCCTACTTAAAGCTAGAATCCAGGTCACCCCACCTGTGTTTTGGTAAAGAGCTGAGGGATGGGCACTATAACCACACTCAAATTCATGGACAGAGATATGGATGCAAGGTCAGACCATGCATGATATTAAAATTATAGTttgaaccatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU417989 lncRNA downstream 49744 11830363 ~ 11830562 (-) True G367755
TU417959 lncRNA downstream 110560 11769542 ~ 11769746 (-) True G367728
TU417956 lncRNA downstream 117722 11762370 ~ 11762584 (-) True G367725
TU417954 lncRNA downstream 119652 11760451 ~ 11760654 (-) True G367723
TU417931 lncRNA downstream 130344 11748565 ~ 11749962 (-) True LOC110523196
TU418877 lncRNA upstream 109530 11994105 ~ 11995184 (-) True G368541
TU418914 lncRNA upstream 172460 12057035 ~ 12057985 (-) True G368577
TU418924 lncRNA upstream 181754 12066329 ~ 12149393 (-) True G368587
TU418893 lncRNA upstream 206772 12091347 ~ 12093391 (-) True G368557
TU418946 lncRNA upstream 240638 12125213 ~ 12126922 (-) True G368606
NM_001246354.2 mRNA downstream 2305 11856300 ~ 11878001 (-) True marchf3
XM_021601679.2 mRNA downstream 69289 11808333 ~ 11811017 (-) True LOC110523198
XM_021601678.2 mRNA downstream 85906 11787253 ~ 11794400 (-) True aldh7a1
XM_021601677.2 mRNA downstream 93064 11748457 ~ 11787242 (-) False LOC110523196
XM_036976791.1 mRNA upstream 232345 12116920 ~ 12119545 (-) True LOC110523205
XM_036976807.1 mRNA upstream 381418 12265993 ~ 12279667 (-) False LOC110523212
XM_021601712.2 mRNA upstream 381418 12265993 ~ 12280540 (-) False LOC110523212
XM_021601706.2 mRNA upstream 381418 12265993 ~ 12281216 (-) False LOC110523212
XM_021601708.2 mRNA upstream 381418 12265993 ~ 12281216 (-) False LOC110523212
TU415770 other downstream 2690208 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 2829598 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 3576123 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 5154326 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 5328632 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 249477 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 820991 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 820991 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 2322615 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 2542763 14427338 ~ 14428591 (-) True G370635

Expression Profile