RNA id: XM_021601716.2


Basic Information

Item Value
RNA id XM_021601716.2
length 6409
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110523216
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12370910 ~ 12560586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGACGCCAAATAGTGTTTCGTCACGTGATTCATGAAAACGTCAAGGTGTGTTTTGTAGCACGAGAGTGGCGCAAAAGTTTTTTCCTATGAACTGGCAGAGGCAAGAAGTGGTTCTTCTGTAATTAGCGACCTGGATGAAAACATAAAGAAACATTTCGTAATTTCCAGAGAACAACTGTCGAAACCAAGACGAAGATCTATTTAGCGGTAGGAGAATGGAGATTGAGAAGAGGACAAATGGATTTGAGTACACTGACCGGAGCAAGTCAATTAATGGCTTCTATGCAGACCACGGTCTCCATGCTGAACCGAGCGATGGGATGGATGATCAGGCTGACCCGCGCTTGTGCCTCATCTGTGGCGACCGTGCGACGGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTCAAGCGCAGCATCTGCAACAAGCGCGTCTACCGCTGCAGCCGCGACAAGAACTGTGAGATGTCACGCAAGCAACGCAACCGCTGCCAGTACTGCCGCCTGCTCAAGTGCCTACAGATGGGCATGAACCGCAAAGCAATCAGAGAGGATGGAATGCCAGGGGGAAGGAATAAGAGCATTGGACCTGTCGAGATTTCGAATGAAGAAATGGAGCGCATTATGACAGGCCAGGAGTTCAAGGAGGATGCTGGTTTGCCAGAGCACACCTGGGGAAATAACGGGGACAGCGACCACAGTTCCCCCGACAATGGTGTCTCCGAGGGCAACCAACCCTCGCCGGTCTCCACCCTGTCGTCCAGCAAGTCCCTGGAAATGAATAGCTACACTGCTACCTACCGGGACCAGTACGTGGGCACGCCCGTGTCCTCACACTACAAGTTCCTGCCGCACCTTTTTGGTTATGCCCAGTCAGTCCTTAGGCCCACCCTGGCCCGCAGCCTGTACTCCCAATCACAGACCCTGGTCTCCCAACTGGTGGCAGCTGAGGACCTGGCCCCCCTGGGGACCCCCATGCTCATAGAAGATGGGTACAGGGTGACCCAGGGGGAGCTGTTTGCCTTGCTCTGTCGGCTGGCAGACGAGCTGCTGTTTCGGCAGATCTCCTGGATCAAGCGGCTGCCCTTCTTCTGCGAGCTGTCCATCGAGGACTACACCCTGCTGCTCAGTGCCACTTGGCAGGAGCTCATCCTGCTCTCCAGCCTCACCATCTACAGTGGCCAGATGTTCGGGGACCTGGCCAACGTCACCACCAAGTACTCACCCTCTGACTACGAGCTGCAAGGGTTTAGTGAAGATGGAATGGATGTGATGGAGAGACTGATATACCTGTTCCGCAAATTTAATCAGCTGAAGGTTAGCAATGAGGAGTATGCCTGTATGAAAGCTATCAACTTCCTCACCCAAGATATCCGAGGGCTTACCAACGTTTCTCAGCTGGAGAAGCTGAACAAGCGCTACTGGTATGTGTGCCAGGACCTAGCTGAGTACAAGTACCCTCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGCCTCCCTGAGATCCGCCACATTGCCGGGAAGCTAGTGAACGTTCCGTTGGAACAGCTCCCCCTGCTGTTTAAGGCCGTCCTACACTCCTGCAAGTTCAGCCCCAACACCCTCCGAGCAGGCACCACCACCTGCCTGACAACAGGCCTCATCCCCGGCAACTGAGCCACGCCTCTCAAAACCCACCGTTCACCTGAAGGAGGGGGGGACCCCCTTCTTTCTTTTGTGAATGTGACAGAATTGTttttctaaatgtatttattaCACGACAGATCTGAATGTATTCTCATCTACGCAGAGCACACGCCTCTGCAATAAGAAATGCACAACCAATGCATCGTTCAGATGTGTAAGTGCAGTTTACAAGTATGTGAAGTGTTAACATGGTAGCTATTTTTCGTATAGATTTCCAGGAAGTTTTTAGTTTGTTTGGGGATCCACTAGAAAACGCTGTTGTAACTGAAAGACTACCTCAGGAAGTGTTTGTTGTGTTTTCAGTGGACATATGCCTGTGTCAGTGAAAAGATAACTTCAGCAGTCTTTGGTATGTTTGTACTATCCTCAGCTACAGTAAAGTACATGAGATATACTTCCCCAATGTGTTTTTTAAAAAATCAATGCGGCGTTAATGATTGTTACCAAAGGTCTCTAAAGATACACTCAGTTACTAAGTGTAGTTGAATTGAGTTTTAATATATACTACATGCTATACATTTAGCTTTTTAAGATTAGTTACATTTATCATGGTGGGGGTGGTGTGGTTTCTCAGGTGGCATTGGTATATCTACTCCCAACACGTCTGCCAATAGTGACAGATGAGATGTCCCAAGCTGCCTTCACTGATGCCTTGTTTCCCATCACTAGTAATGTCAACATAAAGTGGCGGCAAATTCAAGCCTCTTTTTCATTTACATTTCTACTCAAGCCCTTTAGCGAGTAGAAATTCAATTTAGTCAAAATTGATACGGGTATTTTTAAGGGGAATGGTAAGTGGAAGTGAAGGAGAATCTTTCATGTTTCCAACTACACTTGAAAGATTTTCCGATGGAAGATTGCATTTCTTGATCAATCAATTAATTAACTGAAGGACCACTCTGGGATTGGTGATGATAGGCCAGTAAAGTGTTACTGTCCCAGTCGACCTTCTCCTGAGATGTACCAGTTACTCCAGATGCCTGGGAGGACGAGAAGTGCAATATGCACACTGTTGAAAACCCAGGGTGtgggtgtgtttttttttttaaatagatgtGAAATGCTGCCAATAGTGGCAAGCTCAGCCATAGTTCAAGAGTATTGTTGTTGTGCATTCTACTCTTTCAAGAGACATGTTCAAAGCAAAATCCCACCTGTGACCTCTAGGGTCACAGGGATTGTTATGTCTGCATGTGCATCAACAAAAATGTTGCAGCTGCCAGTTAATGTTTTCTGTGATATTTTCTCACTCGAGTTCGTCAGAAGTTGAGTTCTAAACAGGGTAAGGCGGAAGTTTGGTGTACTGCACTCAGAAGTTACTCAGGATCACTTTGTTGAATTGCGCGTttagtattagtagttgtaggTTTTGGGGGACGTCGTAAGTAGCCGTCTTGTCTTTTGGGGTCTTTTTTTTCTGTAGGGGAGTTGTTGTATTTGTGTGGGTGTTTGGACTATATGGAATAGAATACGATTTTAATGGACTAATAAGGACACAATTTGGGTTCTGAATTGATGTAAGGCTCTGTGGTTAGACTCATATTCACTTGTATTCTCAGGTGTGTTACAAACAAGGCAAAAAAAGGACAATATGTTTTTTGAGCAAAGTGCAGCAGTGACCAGACTCAGTCAGTTAGAAGTGTTACATCAGAACTGTAAGGAAATACATGTTGTAAGGGCAAACTGGCATCAGATCCATGGAGTGCACCCCTCCCCTTCAAAGCATTCCAAATCCAACTGAATGTATGTGTTATATCTATTGAATGTTTACATATTTGCACCAGACAATGATTTAAGTGAAGGGACTGTGCCAGAGTTGATGGTTTTGCTATAGGTCCTCAGTCGGAGCCAGTTGTGGCATTTTGACTAGAAGTGCCTCTATCGTAGCCATTCTGTCAACATCTTGGATACACATGTCTTTGAACAAACTGGGAATTGATGCGTATTCGTAAGTGAATTAATCACATCTATTCAATGTCCCGCTTTTGTCTGTTTTTATTCAACTTTTAACATTTGTAATTTACTTggaatgtattttgttgttttctaAGAATGTTTTGCATATCAATTAGATTTGATTGTTTGAAGTGAAGGTGACtaggatttttcttttttttaagtcAGTGGCTGAATCTCAAATCATTCCCTTTACCGCACCCCCCTGGCCAGCCATTTGCACATACACGTGTGCCTCTGCCATATGCATAAGTGTCCCAAAGCTGAGGGAGTGGAAATGATCAAGGGTGTTGGGGCTAATTAGACCCTTCTATAGCCACTTCGACCAAGCCAGAAAGGCTGCAGGCTCCAGAGGGAAGTGCTATCCGGGGAGGGGGACAGGAGTCTATCACCGGCTGGGCTGAATGCGTCGACACCTAGAGGTAATACGACGTCAGGAAGAACTACGCCCTCTAGTGGTCTAGGCGCCAACTTGAAGCACCGCGAAATGTTAGGAGTTTGCATAATTTCATACAAAAGAGTGGACAAGTGTTCCTAATTATATATGTGCATTTGTTTGTGTCTCTTTCTGATGCTTGACACGTAAAATATGAAACATCTCCCAAATTAAATGTTTGACTGTTGTGGTCATTATATTGTAAAACAACGAGGAATTGTATCATTTTGAATTTCATGCCCGTTTTATTATTTAAATGTTGATCTGGAATTGCATCGTTCAAGCTAACGCCGAGACCCTTAGTAGTTCTTCCTGACGTCGTATTACCTCTAGGTGTCGACGCAGTCAGCCCAGCCGGTGATACACTCGTGTCACCCGGCGATGAGCAGCTACataaagcatcctccattcaTGCTGCAAAGGCGTCGGTTTCCTCCTTAACTAGCTTTAATGGCGAGCAGCCCTAAAATACCTGGGAAAATATGCATACTGTCTTAATAAAACACAATTTTCTACCACCATGATGCTACTTCCGGACGTTGCATGCAGCCTTCAGACAGGGGCAAACAACAGACTGGTGCAACCTAGCATGGTGGAGGAAAATTGTTTAATTAAGACAGTACGCATATATTCCCAGTTTTCTTTAGGGCTGCTCGCCATTAAAGTTAGTCTAGGAGGGAATCGTCACATTTGCAGCCTAAACGGAGGATGTTTTATGTCGTTTCTAGTCAAGGGGGGACACTAGCATATTACCGGCTGGGCAGATCACCGTGGGACGTCAGAGGGCAAACGACGTCAAAAATAATATTGCCCTCTGACAGACCTTGGGGCTGCATTCAAGTCACGAGTGTGTCCCAAAGTTGATGGGTTTATTGAGCCCCTCTTTACTCTCGTTTCGTCAAGTGACAATTGAGGGTCCTCCGAGTGAGTTGGTAGTGAAAAAGTGAGAGCCGGTTTGGGATATAACTAGTATTCTGTCCCAGTCATTTACCAGAAACAAGGTAGACATCTTGGAGATGCATGGTTTGCGATGCATGTGTTGGCCTGTAGGTAGGTGCTATCTGTCAGTGGTGCCCAGTTTAAGGGGCATCCtgcagctcagggattcaaattGACAGGGAAGCTCTGCTTTGGTTCATGGTTGACATGTTTGATATTTGTTGACCGGTGTGTGTTTTAATGGATGTTGGCTTTATAATTGAGGAACCTTTTAATCTTGCTCAATTGCATCCTGCAGCTCAGGGATTAAAATTGACAGGGAAGCTCATCTTTGGTTCATGGTTGACATGTTAGATTTTTGTtgacctgcgtgtgtgtgtgcctttttaATCTTGCTCAATTTAAGTGGTAACGGTCCCTAACCACTAAGTGTCAAAAAGAATAGGGCCAGATCATCACAACACCTTTGCCTCTGACACAAACAATTACATTTACGCTCATAACTctttactctgctgtgctgtgttacaatcaacactttattttatttGAGGGAACACTATTGGGGTCTTATGCATAAAGCCATTATACACTTTATTGAAGTGGTGACTAACAACCTCTCGCTTATTTTCAATACGTATTTGTCAACATCGTTTTTCTCATTCTCTTTGATAGAATGTATCAATCAAAAGAAAGGCTTTTGAATTGCAGTGATATCAGGTGTCATATCATGTTTTAGGGGGGCACAATGCTTTGTTTGTTTATGTTGTTCTGGGTTTAAAAAAGTTGCAGGCAGAGAAATTAAAAAGTTAAGATGTGATGTTCTACTGTAACATGTTGTTTCTTAAAGCTACAATCCTTTGAAATAATAACAAAGGGACAccccacctctgttttggtaaaaatctgagggatgggcctggagaagtgttaccactctcaaattcatagacagagctatggatgcaaggactgaccatcccaTGATATAAACAGTCTAGTTTTtgccatgttttgaggctataaagtgttttttaaatatattttctttgtttacaaacatcggAGCAAAACAAGCTACGTTATATTTTggattctgatggggtacaacaatTGAACTCATGATGCGTTTATAAGTACAAATGTTCAAGAATCAATGGCCTATGTATCATTAATCCGTGAGGCCAAAAATTGATGttgcaactaaggattctagctttaacctCCAACATGGGTTTATATACTTTGTGTCCATGTGTCTGCCCTGACTGTAACTTTGACTACCTGTGGCTATCAGAGCAATACGTGTTCAAAGCATGCATAGAATGTCAGGACTTGAAACTAAATAAACATGAACCTTATGCAACTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418315 lncRNA upstream 1859 12368778 ~ 12369051 (+) True G368039
TU418253 lncRNA upstream 27468 12284239 ~ 12343442 (+) True G367987
TU418252 lncRNA upstream 37998 12284239 ~ 12332912 (+) False G367987
TU418195 lncRNA upstream 104858 12265372 ~ 12266052 (+) True G367937
TU418193 lncRNA upstream 109673 12258346 ~ 12261237 (+) True slc12a2
TU418513 lncRNA downstream 119655 12680241 ~ 12683744 (+) True G368216
TU418588 lncRNA downstream 221654 12782240 ~ 12784546 (+) True G368281
TU418672 lncRNA downstream 343584 12904170 ~ 12904418 (+) True G368355
TU418673 lncRNA downstream 344321 12904907 ~ 12905339 (+) True G368356
TU418705 lncRNA downstream 404464 12965050 ~ 12970896 (+) True G368387
XM_036976808.1 mRNA upstream 49334 12317108 ~ 12321576 (+) False LOC110523213
XM_021601713.2 mRNA upstream 51699 12317125 ~ 12319211 (+) True LOC110523213
XM_036976792.1 mRNA upstream 109668 12180768 ~ 12261242 (+) False slc12a2
XM_036976793.1 mRNA upstream 109668 12180768 ~ 12261242 (+) False slc12a2
XM_021601693.2 mRNA upstream 236342 12113703 ~ 12134568 (+) True LOC110523206
XM_036976809.1 mRNA downstream 13993 12574579 ~ 12592217 (+) True nr5a1b
XM_021601719.2 mRNA downstream 66486 12627072 ~ 12647403 (+) False psmb7
XM_021601718.2 mRNA downstream 66486 12627072 ~ 12647406 (+) True psmb7
XM_036976817.1 mRNA downstream 242246 12802832 ~ 12978339 (+) False LOC110523223
XM_036976815.1 mRNA downstream 242247 12802833 ~ 12978339 (+) False LOC110523223
TU417909 other upstream 490875 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 942200 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 1393758 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2521756 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3141679 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 548110 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 1204661 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1695217 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1760518 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1807086 14367672 ~ 14368161 (+) True G370414

Expression Profile