RNA id: XM_036976817.1


Basic Information

Item Value
RNA id XM_036976817.1
length 3486
RNA type mRNA
GC content 0.59
exon number 23
gene id LOC110523223
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12802832 ~ 12978339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTACAAGTCCCACGGTTCAATGTGCGGTGGTAGCGTGATCCGCTCGAGGAGACCATGGCGATACCCAGGACGTTCTGACGAGCTATCAGAAAAATAGCCCTCGAAAAACGGATCAACGCCCCATATAAACGACACTAGACTTGGACACTGTGAGACATAGAAATGGGGTCCCGTATCAAGGACAACCCTGAGGCCACTTTCGAGGTGTACCTGGAGGTGACCCATCCTGGAACCACTGGCTCTGATCCGGAGGTGCGGAGGCGATTCCCCGAGGACTACATCGACCAGGAAACTCTTCAGACAGTCCCCAAGTTCTGCTTTCCCTTCAGTGTGGACAGTCTGTCGGTGAGCCAAGTGGGCCAGAACTTCACCTTTGTTCTGACTGACATCGAGAGCAAGCAGCGCTTTGGCTTCTGCCGCCTCTCCTCGGGGGCCCACAGCTGCTACTGCATCCTCAGCTATCTGCCCTGGTTTGAGGTATTCTACAAGCTGCTCAATATCCTCGCTGACTACACAATCAAAGGCCAGgagAGTCAGTGGCGAGAGCTGCTGGAGTCACTCCATACACTCCCCATCCCTGATCCTGGAGTGCCAGTCCATCTTAGCGTGCATTCCTACTTTACTGTGCCTGACACAAGGGAATTACCCAGCATACCTGAAAACtTAACGGCTTGTGTTCACGGGTCGGCGGCCATGATGTACCCAATGTATTGGCAACACGTTTACATTCCTGTCCTGCCTCAGCACCTTATAGACTACTGCTGTGCGCCCATGCCCTACCTCATTGGAGTACATTCCAGCCTAATGGAGaagGTGAGGGGGATGGCCCTGGATGACGTAGTAGTCCTCAACGTAGACACCAACACCCTAGAAACACCCTTTGACGACCTCCAAAGCCTGCCCAACGACGTGGTGTCATCCTTAAAGAATCGCCTGAAGAAGGTTTCCACGACGACGGGAGATGGCGTGGCCCGAGCTTTCCTCAAGACACAGGCCGCTCTCTTCGGCTGCTACAGGAACGCGCTGCAGATCCAACCGGGAGAGCCAATAACGTTCAGTGAGGAGGTCTTTGTGACCCACCGCTCCAGTGCCATGAGACAGTTCCTGCAGAACGCCATCCAGCTGCAGCTCttcaaacagTTCATCGATGGCCGCTTGGACCTGCTGAACGCTGGTGAGGGCTTCAGTGATGTTTTCGAGGATGAGATCAACATGGGAGAGTATGCAGGCAGCGACAAAAACTACCACCAGTGGCTATTCACAGTAAAGAAAGGGGGCGGTGCTATCTTTAACACAGTGAGGACCAAGGCTAACCCGGCCATGAAAACTGTCTATAAGTTTGCTAAAGATCATGCCAGGATGGGGATAAAGGAAGTCAAGAGCCGACTAAAGCAAAAGGAGCTGGCAGAGAATGGCTACTCCTCGACAGTGGGCACTGGTGGCACAGGAACGGGCACCGGGGAGGAGGGCACCACAGCCGGGTCGCCCACCTCCACAGACGGAAAGGACGGCAGCGCCCGCACCTGGGACGAACGGCGTCCTATCACTGTGCACTTTGGACAGCCCCTCCGAGAGCCTCCCCCTCGGCCCCCTCCTCCCAGGCTCCAATGCGGCAACGCGCGGCCCGCCCGTCCACCTAGGCCTCAGGTGGCCAAGAGACCTCGCAGCAACGTGGGCCTGGAGAGTAGCCCTGAACATGGTGGCCGTCCCACACGTCACTACACAGTCTTTCTGTCCGAGGACTCATCAGGCGACGAGCTGCAGCACGAAGACCACTCCATTGCCAGCTTCCCCGAGAACTTTCTCTTCTCTGCCCCCTTCGAATGGTCACCCCTGCCGCCTCCTTACCGCTCCCTGAAAGAggcggaggagggggaggagcccATCAGCGGCCCCTCCTACACAGCCCCGCCCAGCCCAGTGATGGAGAAGTTTGCTGATATCAACCTGCTGGGGAACATGTTCAGCTGCTTGGACGAGCCTGAGGGACAGCAACTCAGCCTGGCCAAGAGCCTGGAGGACCTCCGCACACCCAAAGACCCCCAGGAGCAGCAGAAATTAATCTACCAGCGGATGGACCTGAGTGGCACCCTTCCAGGCCTCAAGCACTCCAACCCCTACAACAAGATGTGGAGCATGCATGGGCAGGATGATATGGCCATGTCCGGCCGGGTGTCTCCGAATTGGGACCGACCCCTGTCCGTGCCCCCCCCTGACCTGGAAGAGCTGCAGCCCCCTAGCCGAGAGAGCTTCGGTCCCGGGGTCCTCGAGCGGCCGGATCTCTTCACCAGCCACAGCCAAGGGGAGTGCATCACCATCCCCCGTCCCCAGGGAAGGAAAACCCCAGAGCCAGGTAAGGTCTTGGGTCCGCCACCAGTGCCCCAGCCCCGGATCAAGCCGGGGGTAGTGGGGGATGGTGGGACCACTACAGCAGGGGGGCAGGAGTTCCGGCAGGCCCTTGGGATGGGGGGTGACCTGATGCTGCAGCCCACCAAGATGGACTTCAATGACGGGGAGGATGTGGACCTGCTCAGCCTCCTGGACCCCCTGAACAACCCGGCccagaccaccaccaccccagCCTTGGCAGGGGAAGGAGCAGACTCACGGTCCTGTGCCGAACCTCCAACCTCCAGGCCTGTTCTCCCGCCACGTCCCTACCCTCAGAGCCTGCCCCCCTTCCACCAACACATGCCCCTGAACCCCTTCACCCCGCCCCTCGGCTACTCCACCCACAGACACTACTCGCCCACCGTAGCGGGGAATCCCTTCGGCGGCCGTGCCTACGGGCCTCCCGCCTCCACCTATTTCCACGCCTCCCCCCATGGtcaccctcctcaccctctttCTACAATGCTGGGGCTCTACAGACTGTCCTCCCCCGTGGGGTCTACCCTCCCTCCTGGTATGGGATCCATGCGGTCTGCCTTCCCCAATCATGGCGgtcctccccccacctcctcagGCAGCCACCATGCTCTCTCTAACCTGTTGGACTCCCCCTCGGTCCCCACCCCTAGCCTCGCCACTAGGGTACTGCCAAAGCCTCCCAACACTGCAGAGGACTCCAACGAGACTCAGGATCCCTTTGGGGACCTACTGGCCATGGCTAAGCCGGCCGCTGCACCACCTAAAAAGAAGGTGGAGGGCCTTCGGGGGAAGTGGGAGACTTTTGACTAACCCCCCTTTCCTTACTTTCCACGTGTGGGCGTTGTCTTATTCACCTCTTCCCTGCACCAGCTTATGCTGCTGACCAATGAGTAACAGAGTCTGTGTGTCAGGCGACCAATCAAGAGGCTGGGTTCCAAGCTGtcccctctcccccgtctccccctctGCTAAATGTCGGGGTTCAcacctcactctttctctctctccctctctctccccctcctctctccgtctctctctgtctctatgtttctctctctctccgtctctctctgtctctgtttctctctctctccgtctttctctgtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418588 lncRNA upstream 18286 12782240 ~ 12784546 (+) True G368281
TU418513 lncRNA upstream 119088 12680241 ~ 12683744 (+) True G368216
TU418419 lncRNA upstream 283668 12515015 ~ 12519164 (+) False G368126
TU418418 lncRNA upstream 284556 12516412 ~ 12518276 (+) True G368126
TU418402 lncRNA upstream 290324 12511759 ~ 12512508 (+) True G368124
TU418731 lncRNA downstream 56433 13034772 ~ 13034998 (+) True G368413
TU418751 lncRNA downstream 74168 13052507 ~ 13052933 (+) True G368422
TU418753 lncRNA downstream 77018 13055357 ~ 13055898 (+) True G368424
TU418761 lncRNA downstream 82459 13060798 ~ 13065748 (+) True G368432
TU418770 lncRNA downstream 131714 13110053 ~ 13110260 (+) True G368441
XM_021601718.2 mRNA upstream 155426 12627072 ~ 12647406 (+) True psmb7
XM_021601719.2 mRNA upstream 155429 12627072 ~ 12647403 (+) False psmb7
XM_036976809.1 mRNA upstream 210615 12574579 ~ 12592217 (+) True nr5a1b
XM_021601715.2 mRNA upstream 242246 12370910 ~ 12560586 (+) False LOC110523216
XM_021601716.2 mRNA upstream 242246 12370910 ~ 12560586 (+) False LOC110523216
XM_036976822.1 mRNA downstream 111388 13089727 ~ 13107713 (+) True ptpa
XM_021601744.2 mRNA downstream 561631 13539970 ~ 13543920 (+) False ntmt1
XM_021601746.2 mRNA downstream 561631 13539970 ~ 13543920 (+) False ntmt1
XM_021601749.2 mRNA downstream 561631 13539970 ~ 13543920 (+) False ntmt1
XM_021601748.2 mRNA downstream 561632 13539971 ~ 13543920 (+) False ntmt1
TU417909 other upstream 922797 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 1374122 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 1825680 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2953678 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3573601 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 130357 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 786908 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1277464 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1342765 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1389333 14367672 ~ 14368161 (+) True G370414

Expression Profile