RNA id: XM_036976822.1


Basic Information

Item Value
RNA id XM_036976822.1
length 1961
RNA type mRNA
GC content 0.46
exon number 10
gene id ptpa
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13089727 ~ 13107713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCCATCTTCTCCATTGGCTTCCtttcatcaccatatttggtagtgagtggaaacgccaaccggatgcttcacatttatacatccggtgagaTATCTGGCTGTACCGCAATTCTTGTAAACATGGCGGAGACTGAACACCATTCAGGCTCCTCCCCCGAAGATGACTCACCACCGATCCCTGTCTGTCAGAACTTCATGGTGCCCAAAAAGGAGATCAGCATGTTTCCTGATATGGGGAAGTGGAAACGTTCCCAGGCGTATGCTGATTACATGGGATTCATTCTGACGCTGAACGAGGGAGTGAAGGGGAAGAAACTTACATGTGAATACAAAGTGTCTGAGACCATAGAGAAGCTTCTGGCTCTGTTGGGGACTCTGGACCGCTGGATAGATGAGACCCCTCCTGAAGACCAGCCCTCTCGCTTCGGCAACAAGGCCTACAGGACTTGGTACGCCAAGCTCGACCAgGAAGCAGAGGGCCTGGTTGCAGCAGTCATCCCAGAAGACAAGGTAGCTGCGGCTCCAGAGATAGCTGTGTATTTGAAGGAGGCGGTGGGGAACTCCACCAGGATAGACTATGGAACAGGTCACGAGGCTGCCTTTGCCATCTTCCTCTGCTGTCTCTGCAAGATCGGAGCTCTCAGGGTAGATGACCAGTTGGCCATCATTTTCAAGGTGTTTGACAGGTATCTGGTGGTCATGCGCAAGCTTCAGAAAACCTACAGAATGGAGCCTGCTGGCAGCCAGGGGGTCTGGGGGTTGGATGATTTCCAATTTCTACCTTTCATATGGGGCAGCTCCCAGTTTGTAGACCACCCCACGTTGGAGCCCAAGCACTTTGTCGATGAAAAAGTGGTCAACGAGAATCACCACGACTACATGTTCCTGGAGTGTATCAAATTCATTAATGAGatGAAAACTGGTCCGTTTGCTGAGCATTCCAATCAGCTGTGGAACATCAGCGCTGTCCCCACCTGGTCCAAAGTCAACCAGGGCCTGATCCGAATGTACAAGGCAGAGTGCTTGGAGAAGTTCCCTGTTATTCAGCACTTCAAGTTTGGCAGTCTCATCTCCATCCAGCCTGTGAAGCCCTGACGGCCATCCAAAGAAACCATGTGTGTGACGGAGAGACCAAACTCCCAACATCCCTTGAGGATGAACGCCCGATCCTCACCCAAGAAAGATCCCCAAATTCATCCCTAATATTAGCACAGACACCAACCCCAAAATCTGTCTCTTTCGAGAACAAATACCCTCCCCAAATTGCCAATGACGGCACCACGATCATCAGTGACTCAATTTGGTTTTGTTTTGTTGTCTTTCTGTCCCCCTGAAGATTGAAGcgttttttgtgtgtatgtgtgtctctgtgtaagcGTGTTATGGAAAGCTGTCAGTCATTCTCAATGCAATACTGAGAGTGTGTGCACCTTTATTAGTGTGTCTATTTATTTCTATAAATGTATGAATGTtgaccagggttgtgttcattaggcaccaaatggaagaaaatggactgaaagAGGGGACTAACTGAACCTGTCCAATAAGtaacacattttttgtttttctGTTGCGTAATATTTTGGAACGTTTTCCATTGTGTGCTCTAATGAACACTCCCCTGGTGTAGCAGGGATAGGTTAGCCTTGTTGGATAAACATTGCCGAGACAAGAGCTTGGCTTTACTGTGAGTGGCCTGATGTGTATAGCTCCTACCCCATACTGGACACTTGAGTCTTGAGACAGAGCTGTTTTTTTTACAACAGGTTGTGATATAAATGTGTTTCTCTGATTATTTGAGATATTCTAAATTCTTTAGCAGTTCTGATTTTTGTTTTGAGTGTCCACTGATGTTTTGACCAACTGTTTTCAGTTTTGTTGCATAATGTGTCTGTCATTATTGCCTGTATGATCATCTAAGTTGTAAGTCATATTATAATAATTTGTTAATTTTG

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0019211 phosphatase activator activity molecular_function

KEGG:

id description
K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418761 lncRNA upstream 23979 13060798 ~ 13065748 (+) True G368432
TU418753 lncRNA upstream 33829 13055357 ~ 13055898 (+) True G368424
TU418751 lncRNA upstream 36794 13052507 ~ 13052933 (+) True G368422
TU418731 lncRNA upstream 54729 13034772 ~ 13034998 (+) True G368413
TU418705 lncRNA upstream 118831 12965050 ~ 12970896 (+) True G368387
TU418770 lncRNA downstream 2340 13110053 ~ 13110260 (+) True G368441
TU418774 lncRNA downstream 7509 13115222 ~ 13115465 (+) True G368445
TU418782 lncRNA downstream 20947 13128660 ~ 13129119 (+) False G368450
TU418779 lncRNA downstream 21059 13128772 ~ 13129119 (+) False G368450
TU418783 lncRNA downstream 21059 13128772 ~ 13129188 (+) True G368450
XM_036976817.1 mRNA upstream 111388 12802832 ~ 12978339 (+) False LOC110523223
XM_036976815.1 mRNA upstream 111388 12802833 ~ 12978339 (+) False LOC110523223
XM_036976818.1 mRNA upstream 111388 12802833 ~ 12978339 (+) False LOC110523223
XM_036976816.1 mRNA upstream 111388 12802834 ~ 12978339 (+) False LOC110523223
XM_036976819.1 mRNA upstream 111388 12802834 ~ 12978339 (+) True LOC110523223
XM_021601744.2 mRNA downstream 432257 13539970 ~ 13543920 (+) False ntmt1
XM_021601746.2 mRNA downstream 432257 13539970 ~ 13543920 (+) False ntmt1
XM_021601749.2 mRNA downstream 432257 13539970 ~ 13543920 (+) False ntmt1
XM_021601748.2 mRNA downstream 432258 13539971 ~ 13543920 (+) False ntmt1
XM_021601743.2 mRNA downstream 432262 13539975 ~ 13543920 (+) False ntmt1
TU417909 other upstream 1209692 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 1661017 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2112575 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3240573 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3860496 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 983 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 657534 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1148090 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1213391 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1259959 14367672 ~ 14368161 (+) True G370414

Expression Profile