RNA id: XM_021601746.2


Basic Information

Item Value
RNA id XM_021601746.2
length 1744
RNA type mRNA
GC content 0.50
exon number 5
gene id ntmt1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13539970 ~ 13543920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAGCGCAAACCAAATAAGGAAATTGCGTGGACTGCAAGGCGTTTGGCAGTGTGGTGTACAGGGATGCTTTCGGCAAGCAGAAAAAAGCACGTTGGCACTTGATTTGTGACATGATCGAGGTGTTTGGTGATTTAGGACTAAGACGTACGTGAAGGGTTTCCCGGGGACACATGCTGGAGAGAATACAAGACATCAGCTAATCATACCATCATGAATAACATCAAGTCGGCGTCTCGGAGAGGAGTGAAGAAGCCTGGGAGGGGAGTAGGCACTGCTTCAACCAACGTAACACAAGATAGGATGGGTGACGGTGTGCAGAATGAGACCGTTTTCTACTCCAAGGCTGAAAACTACTGGAGAGAAGTGGCGCCCACCGTGGATGGCATGCTAGGAGGCTACGGCAAGATCTCTAACATTGACATTGACGGCTCCAAGAAGTTCCTGCAGAAATTCCTTGGCGGTGAAGGGAAGACCGGCAATGGCTGCGCCCTGGACTGTGGCGCCGGAATAGGGCGCATCACCAAGCGACTGCTGCTGCCCCTCTTCAACACTGTGGACTTGGTGGACGTGACTCAGGAGTTCCTGGACCAGGCTAAGGTCTACCTGGGCGATGACAGCAAACGGGTGGAGAACTACTTCTGCCTCGGCCTGCAGGACTTTATCCCACAGGACAGACGCTACGACGTCATCTGGATCCAGTGGGTCATTGGCCACCTGACTGACGACCACCTGGTGGAGTTCCTGCACCGTTGCCGCGGCGGCCTCCGCCCTGAGGGACTAATTGTCATCAAGGACAACGTGGCCTATGAGGGCGTGATCCCAGACGACGTCGACAGCAGCGTGTGCCGGGAACTGGCTCTGGTGAAGAGCCTGGTGACCCGGGCAGGCCTCACTATCGTCTGTGAAGAGCAACAGATGAACTTTCCGGACGAGATCTACCAGGTCCACCAGCTGGCCCTCCGatagggacagagatggagacggaCGGGAGTAGAGGTGTGGAGGATGGGTGCCAATGCCAAAATGCTGCTGCCCATGCTCAAGCCATGGGACTTTCATGTCCACATGTCCTGTCCACTGAAAGTTGGACAGTCCAGCTTAGTGTGTAGGCGTGTTTGTCTAATGGCGTATATATGACCCACTCTGTGTGAATACATCAGGTAGCGGTTTTATGAATCGTCAGTGTAATTTACTAAAGGATAATTGTGACTGATTCTGGGATCACCCTTAGGAATTATGGATGTACTGTATGGGGGCATATCAGGTAAGGCTCAGAAATGCAAATGCCACTCTGAGTCAATTCTTTACTGGAGGACATGAGTTACAGCACTTGAGTTCACATAGGACAGGGATGAGCAATTCTTTTCAGGGTCATGTTCCGTAGGGCACACAGTTTTGCAATGGAAACTACACAAAAACGTATTTGGTCAAGTTCACGTACCTTATTGTAAATGACCCAGGTTCTCACTTTTGCCTAACGCACAATTAATTCATGTCACTGAATGCTCAGAGTATCTGGTCACATCTGTTTTCCCAAGTCGGAATTAGATCGAGCAACAAATCAGGAACAGAGTTTCCCATCACTGGCATATCCCTCCACATACCCGTTTATGTCATTTATTCACAGTACCAAGAATACATAGATTGGCTGTTTGTAAGACGTGGCAAATACTGATGAAATTTAAGTACTGTATGTTTCCCATGAGGGTTTGAATGTCAAATTAAACAACTTTTCAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420017 lncRNA upstream 19042 13520714 ~ 13520928 (+) True G369551
TU420016 lncRNA upstream 23044 13516723 ~ 13516926 (+) True G369550
TU420011 lncRNA upstream 25417 13514274 ~ 13514553 (+) True G369545
TU420008 lncRNA upstream 27658 13512113 ~ 13512312 (+) True G369542
TU420003 lncRNA upstream 31028 13508152 ~ 13508942 (+) True G369537
TU420047 lncRNA downstream 25260 13569180 ~ 13569510 (+) True G369580
TU420040 lncRNA downstream 36423 13580343 ~ 13582939 (+) True fkbp15a
TU420052 lncRNA downstream 46659 13590579 ~ 13591969 (+) False G369584
TU420051 lncRNA downstream 47501 13591421 ~ 13594647 (+) True G369584
TU420096 lncRNA downstream 115842 13659762 ~ 13660150 (+) True G369619
XM_036976822.1 mRNA upstream 432257 13089727 ~ 13107713 (+) True ptpa
XM_036976815.1 mRNA upstream 561631 12802833 ~ 12978339 (+) False LOC110523223
XM_036976825.1 mRNA downstream 13834 13557754 ~ 13580463 (+) False fkbp15a
XM_021601736.2 mRNA downstream 14192 13558112 ~ 13580463 (+) False fkbp15a
XM_021601734.2 mRNA downstream 14321 13558241 ~ 13580463 (+) False fkbp15a
XM_021601735.2 mRNA downstream 14321 13558241 ~ 13580463 (+) False fkbp15a
XM_036976824.1 mRNA downstream 14321 13558241 ~ 13580463 (+) False fkbp15a
TU418769 other upstream 430836 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1659935 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2111260 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2562818 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3690816 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 221327 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 711883 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 777184 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 823752 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1260741 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile