RNA id: TCONS_00030841


Basic Information

Item Value
RNA id TCONS_00030841
length 786
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_015408
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22985130 ~ 22992029 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTAGGGTCTGAGAAGGCAGAGAGTGGAATAGTCGGCAGCATTGGATAATCCGGACTGGGTCGAGGCATCATCTCCGCTCCCTCAGGAACAACGATAGCCTGAGATGAGAAAAACACCTCAACATAAAGAGAGAATGAGAGTGAGAGTCCAATGAAAAGAGCTGATTATAGAGGTTTTGGGAAGCTGTCATGAAGGCGGAAGACAACTCTCTCCACAAAGTGCTGGATGTCACATGCCTCCGGGCCCCGAACAAACACCATCCAGTCATGTGTGAAGCCCTCGGTAGTGACTTTCTTCCTTAACTGGGCTCTGTGTCCCAGCTCCAATTTCACCTGAACAGTGCACTGAAATAAGACAAAACTACAGTCAACCATCACTTTTTCTGAACAGGAGTACttcaactgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctatctatctatctatctatctatctatctatctatctatctatctatctacctatatctatatatatatatatatatatatatatatatatatatatatatatatatatatataccctgacaaaagtattgtcatcaatcccagttgtcagagtaacaaataataactggattTCTAGTTGTTCATTTGCAAAAGTAgctgaaggtagatttttcagatgattcATCTGTTGAACTCCATTCAAATccttacaaatactgcagaagacccattggaactggcatggacccaagattctcacagattctgtcaagtttggtgaaggaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000132348

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033519 lncRNA upstream 69898 22911192 ~ 22916384 (+) False XLOC_015407
TCONS_00033520 lncRNA upstream 69898 22911339 ~ 22916384 (+) True XLOC_015407
TCONS_00030837 lncRNA upstream 186954 22795557 ~ 22799328 (+) True XLOC_015404
TCONS_00033518 lncRNA upstream 316422 22659848 ~ 22669860 (+) False XLOC_015401
TCONS_00030831 lncRNA upstream 316422 22659848 ~ 22669860 (+) False XLOC_015401
TCONS_00030842 lncRNA downstream 15271 23006792 ~ 23014044 (+) False XLOC_015409
TCONS_00033522 lncRNA downstream 15271 23006792 ~ 23014616 (+) False XLOC_015409
TCONS_00030845 lncRNA downstream 20312 23011833 ~ 23014616 (+) True XLOC_015409
TCONS_00033523 lncRNA downstream 33800 23025321 ~ 23026978 (+) True XLOC_015410
TCONS_00033524 lncRNA downstream 164491 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00030840 mRNA upstream 125104 22851832 ~ 22861178 (+) True XLOC_015406
TCONS_00030839 mRNA upstream 139729 22823952 ~ 22846553 (+) True XLOC_015405
TCONS_00030838 mRNA upstream 160129 22808946 ~ 22826153 (+) False XLOC_015405
TCONS_00030836 mRNA upstream 182617 22795494 ~ 22803665 (+) False XLOC_015404
TCONS_00030835 mRNA upstream 193822 22765492 ~ 22792460 (+) True XLOC_015403
TCONS_00030843 mRNA downstream 15271 23006792 ~ 23024952 (+) False XLOC_015409
TCONS_00030844 mRNA downstream 16154 23007675 ~ 23023120 (+) False XLOC_015409
TCONS_00030846 mRNA downstream 47520 23039041 ~ 23078748 (+) False XLOC_015411
TCONS_00030847 mRNA downstream 57099 23048620 ~ 23077466 (+) False XLOC_015411
TCONS_00030848 mRNA downstream 70564 23062085 ~ 23077483 (+) True XLOC_015411
TCONS_00030832 other upstream 319582 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1610688 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1743264 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1808617 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030786 other upstream 1912487 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030855 other downstream 266256 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 282811 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 688352 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 1021729 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 1357068 24348589 ~ 24351040 (+) True XLOC_015440

Expression Profile

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