RNA id: XM_021601750.2



Basic Information


Item Value
RNA id XM_021601750.2
length 739
RNA type mRNA
GC content 0.51
exon number 6
gene id rpl12
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13603209 ~ 13606051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGACATGACAGCGCGTTATTTCGGCCAAGTCTCGCGTTATTCTCGGTCTATAAAATGTCACGCACCCTATTTTCGTTCTTTCCTTTATCACTTTAGCGGTGAAGGTGCAACAGTAATCGGTCGTCCCGAATCCGGGTTCATCCGACACCCTCACCAACTCAAGCTGAACTGAGCTCAACTTCTACTGCAGCACCATGCCTCCTAAATTCGACCCCAATGAGACTAAAGTTGTGTACATGCGATGCACAGGAGGAGAAGTTGGTGCCACCTCAGCGCTGGCCCCAAAGATTGGACCCCTGGGTCTGTCTCCTAAGAAGGTTGGTGACGATATCGCCAAGGCCACCGGAGATTGGAAGGGCCTGAGGATCACTGTCAAGCTGACCATTGTGAACAGGCAGGCAGCGATCGAGGTGGTGCCCTCTGCTTCAGCGTTGATCATCAAGGCCCTAAAGGAGCCCCCTCGTGACCGGAAGAAGGTCAAGAACATCAAGCACAGCGGTAGCGTGACCTTCGATGAGATTGTGACAGTTGCCCGCACGATGAGGCCCCGCTCCATTGCCAGGGAGCTTTCTGGAACTATCAAGGAGATTCTGGGAACTGCCCAGTCTGTGGGTTGCACCATCGATGGCCGTCCTCCCCATGATGTCATTGATGACATCAACAGTGGCAAGGTGGAGTGCCCATCTGAGTAAAGCATCaaatggataaataaataaacatgaatatTCATTTTGTTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU420051 lncRNA upstream 8562 13591421 ~ 13594647 (+) True G369584
TU420052 lncRNA upstream 11240 13590579 ~ 13591969 (+) False G369584
TU420040 lncRNA upstream 20270 13580343 ~ 13582939 (+) True fkbp15a
TU420047 lncRNA upstream 33699 13569180 ~ 13569510 (+) True G369580
TU420017 lncRNA upstream 82281 13520714 ~ 13520928 (+) True G369551
TU420096 lncRNA downstream 53711 13659762 ~ 13660150 (+) True G369619
TU420205 lncRNA downstream 94353 13700404 ~ 13700664 (+) True G369719
TU420206 lncRNA downstream 96865 13702916 ~ 13703134 (+) True G369720
TU420207 lncRNA downstream 97120 13703171 ~ 13703492 (+) True G369721
TU420208 lncRNA downstream 97497 13703548 ~ 13703868 (+) True G369722
XM_036976825.1 mRNA upstream 22746 13557754 ~ 13580463 (+) False fkbp15a
XM_021601736.2 mRNA upstream 22746 13558112 ~ 13580463 (+) False fkbp15a
XM_021601734.2 mRNA upstream 22746 13558241 ~ 13580463 (+) False fkbp15a
XM_021601735.2 mRNA upstream 22746 13558241 ~ 13580463 (+) False fkbp15a
XM_036976824.1 mRNA upstream 22746 13558241 ~ 13580463 (+) False fkbp15a
XR_005051642.1 mRNA downstream 6983 13613034 ~ 13644128 (+) True LOC118964562
XM_036976828.1 mRNA downstream 41434 13647485 ~ 13651835 (+) True ccn1l1
XM_021601755.2 mRNA downstream 62122 13668173 ~ 13685140 (+) True lmo4a
XM_021601761.2 mRNA downstream 200734 13806785 ~ 13818030 (+) True LOC110523240
XM_021601762.2 mRNA downstream 212276 13818327 ~ 13850807 (+) True gpr107
TU418769 other upstream 494075 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1723174 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2174499 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2626057 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3754055 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 159196 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 649752 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 715053 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 761621 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1198610 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile