RNA id: XR_005051962.1


Basic Information

Item Value
RNA id XR_005051962.1
length 126
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118964769
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13604329 ~ 13604454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGCCACTTTGCCAGTCTGTCTGAGTGACTGAGTGTAGTCCAGTGGAGGCAGAGATGGACCCAGTTCTAGGAAACAGGGCTGCCCTGGTGGTGGGCAACTTTGTGCCGAAAGTCCTGGAACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420051 lncRNA upstream 9682 13591421 ~ 13594647 (+) True G369584
TU420052 lncRNA upstream 12360 13590579 ~ 13591969 (+) False G369584
TU420040 lncRNA upstream 21390 13580343 ~ 13582939 (+) True fkbp15a
TU420047 lncRNA upstream 34819 13569180 ~ 13569510 (+) True G369580
TU420017 lncRNA upstream 83401 13520714 ~ 13520928 (+) True G369551
TU420096 lncRNA downstream 55308 13659762 ~ 13660150 (+) True G369619
TU420205 lncRNA downstream 95950 13700404 ~ 13700664 (+) True G369719
TU420206 lncRNA downstream 98462 13702916 ~ 13703134 (+) True G369720
TU420207 lncRNA downstream 98717 13703171 ~ 13703492 (+) True G369721
TU420208 lncRNA downstream 99094 13703548 ~ 13703868 (+) True G369722
XM_036976825.1 mRNA upstream 23866 13557754 ~ 13580463 (+) False fkbp15a
XR_005051960.1 mRNA downstream 290 13604744 ~ 13604869 (+) True LOC118964767
XR_005051959.1 mRNA downstream 870 13605324 ~ 13605449 (+) True LOC118964766
XR_005051961.1 mRNA downstream 1246 13605700 ~ 13605821 (+) True LOC118964768
XR_005051642.1 mRNA downstream 8580 13613034 ~ 13644128 (+) True LOC118964562
XM_036976828.1 mRNA downstream 43031 13647485 ~ 13651835 (+) True ccn1l1
TU418769 other upstream 495195 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1724294 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2175619 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2627177 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3755175 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 160793 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 651349 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 716650 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 763218 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1200207 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile