RNA id: XR_005051959.1



Basic Information


Item Value
RNA id XR_005051959.1
length 126
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC118964766
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13605324 ~ 13605449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCGCCACTTTGCCAGTCTTTCTGAGTGACTGAGTGTAGTCCAGTGGAGGCTAAGATGGACTCAGCTCTAGGAAACAGGGCTGCCCAGACAGTGGGTAACTCTGTGCCGAAAGGCCTGGAACAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU420051 lncRNA upstream 10677 13591421 ~ 13594647 (+) True G369584
TU420052 lncRNA upstream 13355 13590579 ~ 13591969 (+) False G369584
TU420040 lncRNA upstream 22385 13580343 ~ 13582939 (+) True fkbp15a
TU420047 lncRNA upstream 35814 13569180 ~ 13569510 (+) True G369580
TU420017 lncRNA upstream 84396 13520714 ~ 13520928 (+) True G369551
TU420096 lncRNA downstream 54313 13659762 ~ 13660150 (+) True G369619
TU420205 lncRNA downstream 94955 13700404 ~ 13700664 (+) True G369719
TU420206 lncRNA downstream 97467 13702916 ~ 13703134 (+) True G369720
TU420207 lncRNA downstream 97722 13703171 ~ 13703492 (+) True G369721
TU420208 lncRNA downstream 98099 13703548 ~ 13703868 (+) True G369722
XR_005051960.1 mRNA upstream 455 13604744 ~ 13604869 (+) True LOC118964767
XR_005051962.1 mRNA upstream 870 13604329 ~ 13604454 (+) True LOC118964769
XM_021601736.2 mRNA upstream 24861 13558112 ~ 13580463 (+) False fkbp15a
XR_005051961.1 mRNA downstream 251 13605700 ~ 13605821 (+) True LOC118964768
XR_005051642.1 mRNA downstream 7585 13613034 ~ 13644128 (+) True LOC118964562
XM_036976828.1 mRNA downstream 42036 13647485 ~ 13651835 (+) True ccn1l1
XM_021601755.2 mRNA downstream 62724 13668173 ~ 13685140 (+) True lmo4a
XM_021601761.2 mRNA downstream 201336 13806785 ~ 13818030 (+) True LOC110523240
TU418769 other upstream 496190 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1725289 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2176614 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2628172 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3756170 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 159798 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 650354 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 715655 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 762223 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1199212 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile