RNA id: TCONS_00030842


Basic Information

Item Value
RNA id TCONS_00030842
length 1009
lncRNA type retained_intron
GC content 0.44
exon number 9
gene id XLOC_015409
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23006792 ~ 23024952 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAATTGACAAACGCATAATAGAAACCTGTAATTAAACGGTGGGTTGGAGCAACGGCGTGAACGCTGGCGCCTCACGGCTAGTAACGGGGAGTTATCTGTTGCACGACCACCTTGCGGTGATCAGATCAGAAGTGATCAGCATTTGATTTAAAGGAGAACTAGTAAAGCACTGTGATTTAGACCTCAATCTGCACATCATTGGACCTTTGGAAAACATGGTGCAAAACAAGATCACTGAAGTAACCGGATTCCATCGCTCCTTTAAGGGGCAAAACCCTTTCAAGACTGATGAATTCATCGATTCGGATTCCCACCTTGAGTCATCCTTCATATTGGAGCGCTCTACAAGGCCTGCCATGCCTTCCAGCCAGCCCATCGATATCCCTGATGCCAAGAAGAGAAATAAGAAGAAAAAGAGATGCAGAGCCACTGACAGTTTTTCCGGACGTTTTGAAGatgtttacaaactacaaaatgagGTTCTTGGAGAAGGGGCTTATGCTGTTGTACAGACCTGCATCAATCTGATCACCAATAAAGAATACGCAGTAAAGATAATTGAGAAGAGGCCGGGCCACAGTCGGAGCCGTGTCTTCAGGGAGGTGGAAATGCTGTACCAGTGTCAGGGCCACAGAAACATTTTGGAACTGGTGGAATATTTTGAGGAAGAGGACAAATTTTATTTAGTCTTTGAGAAACTGAGAGGCGGTTCAATCTTGACTCACATACACCGAAGACAACACTTCAATGAACAGGAAGCCAGCATAGTGGTGCAGGACATCGCCAGCGCACTGGACTTCCTTCACAACAAAGGGATGGCACATCGAGACCTAAAGCCAGAGAACATCCTTTGTGAACACAGTGACAGGGTGAGTCTCTCTCTGTATATGAGGAGACATGAAACATCTGAGGAGAACACACATGCACTGCTTTTCTGACCAGATTTTTGACTATCTTTTGggtacagtaatttatttttattttgttttatttttggtgcTGTTGAAC

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0009931 calcium-dependent protein serine/threonine kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6099 Predicted to enable calcium-dependent protein serine/threonine kinase activity; calmodulin binding activity; and calmodulin-dependent protein kinase activity. Predicted to be involved in intracellular signal transduction; peptidyl-serine phosphorylation; and protein autophosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in lens; tail bud; and yolk syncytial layer. Orthologous to human MKNK2 (MAPK interacting serine/threonine kinase 2).

Ensembl:

ensembl_id ENSDART00000145126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033521 lncRNA upstream 14763 22985130 ~ 22992029 (+) False XLOC_015408
TCONS_00033519 lncRNA upstream 90408 22911192 ~ 22916384 (+) False XLOC_015407
TCONS_00033520 lncRNA upstream 90408 22911339 ~ 22916384 (+) True XLOC_015407
TCONS_00030837 lncRNA upstream 207464 22795557 ~ 22799328 (+) True XLOC_015404
TCONS_00033518 lncRNA upstream 336932 22659848 ~ 22669860 (+) False XLOC_015401
TCONS_00033523 lncRNA downstream 11277 23025321 ~ 23026978 (+) True XLOC_015410
TCONS_00033524 lncRNA downstream 141968 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00033525 lncRNA downstream 141970 23156014 ~ 23184804 (+) False XLOC_015414
TCONS_00030853 lncRNA downstream 142003 23156047 ~ 23184804 (+) True XLOC_015414
TCONS_00033526 lncRNA downstream 392409 23406453 ~ 23410848 (+) False XLOC_015418
TCONS_00030840 mRNA upstream 145614 22851832 ~ 22861178 (+) True XLOC_015406
TCONS_00030839 mRNA upstream 160239 22823952 ~ 22846553 (+) True XLOC_015405
TCONS_00030838 mRNA upstream 180639 22808946 ~ 22826153 (+) False XLOC_015405
TCONS_00030836 mRNA upstream 203127 22795494 ~ 22803665 (+) False XLOC_015404
TCONS_00030835 mRNA upstream 214332 22765492 ~ 22792460 (+) True XLOC_015403
TCONS_00030846 mRNA downstream 24997 23039041 ~ 23078748 (+) False XLOC_015411
TCONS_00030847 mRNA downstream 34576 23048620 ~ 23077466 (+) False XLOC_015411
TCONS_00030848 mRNA downstream 48041 23062085 ~ 23077483 (+) True XLOC_015411
TCONS_00030849 mRNA downstream 67203 23081247 ~ 23099643 (+) False XLOC_015412
TCONS_00030850 mRNA downstream 67204 23081248 ~ 23099644 (+) False XLOC_015412
TCONS_00030841 other upstream 15271 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 340092 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1631198 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1763774 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1829127 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030855 other downstream 243733 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 260288 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 665829 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 999206 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 1334545 24348589 ~ 24351040 (+) True XLOC_015440

Expression Profile

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