RNA id: XM_036976832.1


Basic Information

Item Value
RNA id XM_036976832.1
length 3067
RNA type mRNA
GC content 0.41
exon number 9
gene id ncs1a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13860452 ~ 13882141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatactgtatacacacactccctcctctcttccaccctATTCCCAGTAGGGTGTTCCAGCAGCAGCAAGCCAGGATTGCAGGAAGCAGGAGTAACACGGCTGAGTGGTTTACAGGCTacagccctcctctctccagactcATCCTGCTACGCCGAGAGGAGAGACTAACGCTACTGCTGCTCTTTCATAGTATTCTTTGCCTTTTCCTGATcgttttttcccttttttttctATAATTCCACGTAATTTTATGTCTGCTACTTGAAGAGCAAGACTTCAAGAAGTATTTttttgattatatatatatatttttttaaaatggtaATGAAGGTGGCAGAACTGGGAGTCTTTTAAAGCACGTGGAGAAAGGCTTAAAGGCATATGCTTAAACTATGGGGAAGTCCAACAGCAAACTAAAGCCTGAAATGGTGGAGGAGCTGACCAGGAAAACCTACTTCACAGAAAAAGAGGTACAACAATGGTATAAGGGTTTTATTAAGGACTGTCCTAGTGGTCAGTTGGATTCAGCTGGCTTCCAGAAGATCTACAAGCAATTCTTCCCCTTCGGTGACCCCACCAAGTTCGCCAGCTTCGTTTTCAATGTGTTTGACGAGAACAAGGATGGACGTATTGAGTTTGCCGAGTTCATCCAGGCCCTGTCGGTCACCTCCAGAGGGACCCTGGACGAGAAGCTCAGATGGGCCTTCAAGCTTTACGACCTGGATAACGACGGTTACATAACTCGGGACGAGATGCTGAATATTGTGGACGCCATTTACCAGATGGTGCCGCGCGTACAGGGGAACACGGGGAACACGGTGGAATTGCCTGAGGAAGAAAACACACCAGAGAAAAGAGTGGACCGAATCTTTGCCATGATGGACAAGAACGCAGACGGATTGTTGACCCTGAAGGAATTCCAGGAGGGCTCCAAAGCAGACCCGTCCATCGTCCAGGCTCTATCGCTGTACGACGGGCTGGTTTAGCAGTGAGTACACTCCCCACATTGTCCGTGATGGCCTGTTAACGTGGTGTTACCCTGCTAAGTGAGTGATGGAGTCTGCTACCTGTCTCGTCCTCTGACTCCTGCTCAGCCTTTTAGGGAAGCTGACAATGGTGGGCCGCTGCTGTCAATCATTCATCATCACCATGGTTTCCAGGATTAGAGTAAATTCAACAACCATAAACTCGTTTGCCTTCGCAGAAGCTAGTGCCGTCGATGTGCTTACAAGACATTTCTCTGAGAGACAGAAGGAAGTTAGGTACTTTTCTGTGGGAGGAAGAAGGGCCAgggttcattaggcaccaaacaggaAAAGTAGACAAACAGGGCGGGACTACCTGGactttgtccaataagaaatgttcattttgttgCGAAACATCTTTTTAAAAATTCAATTGCAAAGCCTAATGAACATTGAACAACATGGGACTGAACACAGGCTACTAGTCTACGGACCATGGATCTAAGCAGTTACCAtctttatatatttatgttctgTGATACAGAGCATCAGTTTAATATGCTGCAGCCAACGACAAGAAACTGCTAATGACACGCTGACTGTCTTTTAGAACGCTTGGGAAAGCCAACCTTATTTATTTAATTGGATTTAAATAACAGCAGCTCATGTTTGACATCAGCATGAATTAATATTGATTCTGTGTTCCTGCCGCACAAAGCTTTAATTGTTGAAGTACGTTTTTGATTTCAACACCAACTAAAAACTGCAAAGCGAACAGGGCCCAATTACAGATGCTGTATGAGTTTGAGCCAACTATTACAGAGATGCATAGAAATGAAATGCTGAGCAGTTGCTTATCTATGAGCAGTCCTAGAGGCTTACACTACTGAATTACGGACACTATAATCAGTGTATTCTCTCAAATTCCCATCATAACTGAACCGTTGTGTGGTCATGCGACATACAATATAAATTTATGAGATGGAAAAGGGTGGAACGACACGGATTGTGGATCACTTGAAACTTGATTGAAATCTTGAACGCTAGGTCAACAAGTACGATGCAAAATAAGTGTTCAAATAGATGTCTTTGCAAATGACTTCAAATGCATGTTAGACGCATTATGTTTGTGTGTAAATACTAAGGTGACTGACTATATGCACTGTCGCCATAATCGTCAGGTTGGTTATTTTAAGTCAGTACCCTGATATGTAAAACATCCTCTGTGGTAGAAAAGCATTTAGTGACCCTTTTACTTATCACTCCATTGAACTAGACAATGAACATTTCACCACAAAGAAAATGATTTCCCTCCCTCTGTAATGGGTGTTGTTCATCGCTCTATGGTAATGACTGGGGCACCATTTGCTTGTCCTTCCATCGCTACTGCTTCAGTGAAATAgattttcctttgattttttttgtactGTGCACAAACTCTTCTCTCACAAATATCAATTGAATAGGTGTTTTTAAGAGTTTGAGAGAAGTTGCAACTGCTGTAGTCGAGGGAATGGTGAGAGAAGTGTTTAAATTAGCTGTATAAAAACTCATCTTACCTGTACATAGATAAACCTGTTGGCAAATTTAAGGTCTTTTGATTGGCCTTGTATGTTGATATCCTCAAATTGCAGATTTCATTCAGTATTTTTCACCATGATGCATCTGGAGTGAcccaatgtacagtatgtggcaTGCTGTGTGATTAGAAACAAGCTACAAGTCATGTAGGCTTAATCAGTATGAATTTTAGTTTATCACTGTTGACAAATTTTTCAATTAAATTCAGTATCATATGATTAGACAGGGTTTGTCTTGGTATCAATTGCCTTGGTATCAAACCAATTCTCACAGCATTTAAGGACACTATACTGTAAATAATATAAACTGTTAACCTCACAGTATACATAAAAGTGCTCATTGTTGACAAGACTATGAACAGACTATTCTTAATATTGAAAGTGAAAACATTGACTGACCATCCCAAATCCAAATGGCATACAAATGTAAATGTCAGTTGGTCTCCTTACTCAGTACATGACAGAGGTAGTTGTTTTTGTCTTCAGTGTTTTTGAAATAAAAGAGCTGCTTTCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420310 lncRNA upstream 3595 13856564 ~ 13856861 (+) True G369805
TU420290 lncRNA upstream 6287 13800355 ~ 13854169 (+) True G369785
TU420263 lncRNA upstream 62699 13782269 ~ 13797757 (+) True G369770
TU420235 lncRNA upstream 136506 13723686 ~ 13723950 (+) True G369742
TU420234 lncRNA upstream 138014 13722083 ~ 13722442 (+) True G369741
TU420336 lncRNA downstream 2135 13884276 ~ 13886502 (+) True G369820
TU420330 lncRNA downstream 4662 13886803 ~ 13892285 (+) True G369819
TU420414 lncRNA downstream 102235 13984376 ~ 13984624 (+) True G369892
TU420398 lncRNA downstream 109207 13991348 ~ 13995454 (+) True G369878
TU420458 lncRNA downstream 145532 14027673 ~ 14034826 (+) True G369936
XM_021601762.2 mRNA upstream 9649 13818327 ~ 13850807 (+) True gpr107
XM_021601761.2 mRNA upstream 42426 13806785 ~ 13818030 (+) True LOC110523240
XM_021601755.2 mRNA upstream 175316 13668173 ~ 13685140 (+) True lmo4a
XM_036976828.1 mRNA upstream 208621 13647485 ~ 13651835 (+) True ccn1l1
XR_005051642.1 mRNA upstream 216328 13613034 ~ 13644128 (+) True LOC118964562
NM_001165172.1 mRNA downstream 104554 13986695 ~ 13990227 (+) True arpc5l
XM_036976843.1 mRNA downstream 246418 14128559 ~ 14142466 (+) False LOC110523252
XM_036976841.1 mRNA downstream 246651 14128792 ~ 14142466 (+) False LOC110523252
XM_036976844.1 mRNA downstream 246671 14128812 ~ 14142466 (+) True LOC110523252
XM_036976848.1 mRNA downstream 266291 14148432 ~ 14229308 (+) False LOC110523253
TU420256 other upstream 91160 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 751322 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1980421 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2431746 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2883304 10976682 ~ 10977152 (+) True G366748
TU420927 other downstream 373662 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 438963 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 485531 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 922520 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 1166037 15048178 ~ 15053556 (+) True LOC110519479

Expression Profile