RNA id: XM_036976844.1


Basic Information

Item Value
RNA id XM_036976844.1
length 2413
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110523252
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14128559 ~ 14142466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGAAAATTATTATGCATACATTTGTTGACTGGGCAtaactaaaaaaatatatagcagaGATCATCCAACACTGGAAAGGTGATATGCTCGTGAAGTTTACAGTGTCTAGCTTTTGGATTCTTCCAACATGTCGAGCTCCTACCGAAGCAGGATCCAGGAATTCAAGGTGGCCTTGAGTGAAGAGAAGCTAGACTTGAATGCACTCCGGGAACTTTGCTTCAGCGgTATCCCATTTGAAGGAGGCATCCGTGCACTTTGCTGGAAAGTCCTTCTAaactacctgcctctggaccaGACGATGTGGGACTCCTTTCTCAAAAAGCAGAGGGAGGGTTATTCCCAGTTCCTGAAGGAGATGATTATCCAGCCCGGCATCGCTAAGGCCAACCTGGGCCTCTCCAGAGAGGATGTGACCATGGAGGACCACCCTCTCAACCCCAGCCCAGAGAGCAAGTGGAACAACTACTTCAGAGACAACGAGGTGCTGCTGCAGATTGATAAAGATGTCAGGCGTCTGTACCCAGACATGGCCTTCTTCCAGTGGCCCACAGACTACCCATGCCAGCTGATCCTGGACCCCCAGAATGACTATGAGACCCTCAGGTGCCGTGTGGAACAGACCACCCTCAAGGCCCAGACCGTGGACCGCAACCGCAGCGGGGTCACCAACGTGAGCTCCCCGGGCAAGGCCCTCAACCTGTACCCTTCAAACGAGTACGAGGTGCTGCCCAATGGCTGTGAGGCCCACTGGGAGGTGGTGGAGCGCATCCTGTTCATCTACGCTAAGCTCAACCCGGGCATCGCCTACGTGCAGGGCATGAACGAGGTGGTGGGACCCCTCTACTACACCTTCGCTACCGACCCCAATGACAAGTGGAGAGAGCACGCTGAGGCGGACACCTTCTTTTGTTTCACCAACCTGATGTCGGAGAACCGGGACATGTTCATCAAGAGTCTGGACGACTCACAGTGCGGCATCACCTACAAGATGGAGAGCGTCTACTCCATGCTCAAGGAGAAGGACATGGAGCTCTACATTAAACTGCAGGAGCAGAACATCAAGCCTCAGTACTTCACCTTCCGCTGGCTGACCCTGCTGCTGTCTCAGGAGTTCCTCCTGCCCGACGTCATCCGCATCTGGGACACACTCTTTTCCGACCAGGACCGCTTCAACTTCCTCATCCTGGTCTGCTGCGCCATGCTCGTACTGATTCGAGATCAGTTGCTGGCAGGCGACTTCACGATCAACATGCGACTGCTGCAGGACTACCCCATCTCAGATGTCCACACCATCCTGGCCAAGGCCAAGCAGCTTCAGGACGGGTCATAGCCACCCCTacctcccttctcccttccttgGTTGGGGAGGGGAGGATGCAACATTAAACTGATAACCCTGGGCACaacaaaggagggagaggaagacacCTGGCGCCAGGTTTGGTACAAGGTTGGTCGGAGAAACCAAACTCGGTACTTAGGCTTGTCATCTCACTCTCACGGCCTGACAGTTTTTCCACTGGGAGGGTGTGTGGCCTCAAGCTATTTATTTTTGCACTGAACACTTGAAAAAAAGTGTACAAATCTGCATATATGAAGCAGAGAAACCACAGTAACGATTACAACAGAAGCATCATTATAAAGTCTGCCAGGGCTAATATCACACTCCCAGGTTTTTTTTAGGGTGTTTCTTTTTAGTGGGTTGGGAataactttattttttttacggCCAAAGtgacgtttttttatttttatcattaAGATGAAATATAATACTACCTTGTAAAGACTAACCACCacaacagcaaaaaaaaaatgttgccaCAGGGTTTGCTTTAAAGTATAGATTGTTATGACATTGGGCCTCAACGCaagcatcctctctctctgttttcatgACCGTGCTCAGATATTTACTCTACGCACATGAGCTACACGTCTGGACAGTTTATAGCTGGTTGTAACCTGATTCCGTGTCGATGGAGTCGCCAATATTAATGTATGTTTGCTGTCAAACCAATGGGATGTGAaacttgttttatattttttttggtGTGTCAtgtagcagaagctcttatccagagcgacttacaggtgcaattagggttaagtgccttgctcaagggcacatcggcagattggTCACCTAGTCGGCTTCTgaattcgaaccagcgacctttcagttactgtcctaaagctcttaaccactaggctacttgctgtCCGACCCACTAACCTAACTGAAATTGATACATTGATGACGATGATATGGTTGCTTTTGATGTGAGGGCATTACTAAGCAAACAAATCAATCCAATTTAAATTGGGCATTcatttttttataatatattttgaCCTATCTCTGGTCGCATTGAGTGTCCAGAATAAACCAGAATACATTAAACATGAA

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K24796 TBC1D13; TBC1 domain family member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420444 lncRNA upstream 38841 14074753 ~ 14089971 (+) True G369922
TU420475 lncRNA upstream 66499 14062086 ~ 14062313 (+) True G369953
TU420474 lncRNA upstream 66876 14061718 ~ 14061936 (+) True G369952
TU420472 lncRNA upstream 68099 14060215 ~ 14060713 (+) True G369950
TU420471 lncRNA upstream 69090 14059484 ~ 14059722 (+) True G369949
TU420495 lncRNA downstream 951 14143417 ~ 14145104 (+) True G369972
TU420501 lncRNA downstream 3515 14145981 ~ 14147544 (+) False G369974
TU420502 lncRNA downstream 4326 14146792 ~ 14147544 (+) True G369974
TU420500 lncRNA downstream 83719 14226185 ~ 14231585 (+) True LOC110523253
TU420551 lncRNA downstream 101793 14244259 ~ 14251198 (+) True G370022
NM_001165172.1 mRNA upstream 138585 13986695 ~ 13990227 (+) True arpc5l
XM_036976833.1 mRNA upstream 246671 13860453 ~ 13882141 (+) False ncs1a
XM_036976832.1 mRNA upstream 246671 13860456 ~ 13882141 (+) False ncs1a
XM_036976835.1 mRNA upstream 246671 13860463 ~ 13882141 (+) True ncs1a
XR_005051643.1 mRNA upstream 248901 13860453 ~ 13879911 (+) False ncs1a
XM_036976848.1 mRNA downstream 5966 14148432 ~ 14229308 (+) False LOC110523253
XM_036976847.1 mRNA downstream 30097 14172563 ~ 14229308 (+) False LOC110523253
XM_036976845.1 mRNA downstream 32639 14175105 ~ 14229308 (+) False LOC110523253
XM_036976846.1 mRNA downstream 32974 14175440 ~ 14229308 (+) False LOC110523253
XM_021601785.2 mRNA downstream 129839 14272305 ~ 14308719 (+) True mmp11b
TU420256 other upstream 359516 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1019678 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2248777 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2700102 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 3151660 10976682 ~ 10977152 (+) True G366748
TU420927 other downstream 113337 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 178638 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 225206 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 662195 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 905712 15048178 ~ 15053556 (+) True LOC110519479

Expression Profile