Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030845 |
| length | 784 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 5 |
| gene id | XLOC_015409 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 23006792 ~ 23024952 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0018105 | peptidyl-serine phosphorylation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0046777 | protein autophosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005516 | calmodulin binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0009931 | calcium-dependent protein serine/threonine kinase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0004683 | calmodulin-dependent protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6099 | Predicted to enable calcium-dependent protein serine/threonine kinase activity; calmodulin binding activity; and calmodulin-dependent protein kinase activity. Predicted to be involved in intracellular signal transduction; peptidyl-serine phosphorylation; and protein autophosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in lens; tail bud; and yolk syncytial layer. Orthologous to human MKNK2 (MAPK interacting serine/threonine kinase 2). |
| ensembl_id | ENSDART00000132437 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033521 | lncRNA | upstream | 19804 | 22985130 ~ 22992029 (+) | False | XLOC_015408 |
| TCONS_00033519 | lncRNA | upstream | 95449 | 22911192 ~ 22916384 (+) | False | XLOC_015407 |
| TCONS_00033520 | lncRNA | upstream | 95449 | 22911339 ~ 22916384 (+) | True | XLOC_015407 |
| TCONS_00030837 | lncRNA | upstream | 212505 | 22795557 ~ 22799328 (+) | True | XLOC_015404 |
| TCONS_00030831 | lncRNA | upstream | 341973 | 22659848 ~ 22669860 (+) | False | XLOC_015401 |
| TCONS_00033523 | lncRNA | downstream | 10705 | 23025321 ~ 23026978 (+) | True | XLOC_015410 |
| TCONS_00033524 | lncRNA | downstream | 141396 | 23156012 ~ 23184804 (+) | False | XLOC_015414 |
| TCONS_00033525 | lncRNA | downstream | 141398 | 23156014 ~ 23184804 (+) | False | XLOC_015414 |
| TCONS_00030853 | lncRNA | downstream | 141431 | 23156047 ~ 23184804 (+) | True | XLOC_015414 |
| TCONS_00033526 | lncRNA | downstream | 391837 | 23406453 ~ 23410848 (+) | False | XLOC_015418 |
| TCONS_00030840 | mRNA | upstream | 150655 | 22851832 ~ 22861178 (+) | True | XLOC_015406 |
| TCONS_00030839 | mRNA | upstream | 165280 | 22823952 ~ 22846553 (+) | True | XLOC_015405 |
| TCONS_00030838 | mRNA | upstream | 185680 | 22808946 ~ 22826153 (+) | False | XLOC_015405 |
| TCONS_00030836 | mRNA | upstream | 208168 | 22795494 ~ 22803665 (+) | False | XLOC_015404 |
| TCONS_00030835 | mRNA | upstream | 219373 | 22765492 ~ 22792460 (+) | True | XLOC_015403 |
| TCONS_00030846 | mRNA | downstream | 24425 | 23039041 ~ 23078748 (+) | False | XLOC_015411 |
| TCONS_00030847 | mRNA | downstream | 34004 | 23048620 ~ 23077466 (+) | False | XLOC_015411 |
| TCONS_00030848 | mRNA | downstream | 47469 | 23062085 ~ 23077483 (+) | True | XLOC_015411 |
| TCONS_00030849 | mRNA | downstream | 66631 | 23081247 ~ 23099643 (+) | False | XLOC_015412 |
| TCONS_00030850 | mRNA | downstream | 66632 | 23081248 ~ 23099644 (+) | False | XLOC_015412 |
| TCONS_00030841 | other | upstream | 20312 | 22986282 ~ 22991521 (+) | True | XLOC_015408 |
| TCONS_00030832 | other | upstream | 345133 | 22660071 ~ 22666700 (+) | True | XLOC_015401 |
| TCONS_00030805 | other | upstream | 1636239 | 21375467 ~ 21375594 (+) | True | XLOC_015384 |
| TCONS_00030797 | other | upstream | 1768815 | 21186377 ~ 21243018 (+) | False | XLOC_015381 |
| TCONS_00030793 | other | upstream | 1834168 | 21175950 ~ 21177665 (+) | False | XLOC_015380 |
| TCONS_00030855 | other | downstream | 243161 | 23257777 ~ 23257897 (+) | True | XLOC_015416 |
| TCONS_00030856 | other | downstream | 259716 | 23274332 ~ 23274781 (+) | True | XLOC_015415 |
| TCONS_00030864 | other | downstream | 665257 | 23679873 ~ 23679989 (+) | True | XLOC_015426 |
| TCONS_00030870 | other | downstream | 998634 | 24013250 ~ 24014943 (+) | True | XLOC_015433 |
| TCONS_00030885 | other | downstream | 1333973 | 24348589 ~ 24351040 (+) | True | XLOC_015440 |
