RNA id: XM_036976851.1


Basic Information

Item Value
RNA id XM_036976851.1
length 1974
RNA type mRNA
GC content 0.49
exon number 9
gene id smarcb1b
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14313714 ~ 14333305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTATAAAAGAATGTTTGGCAAACATTTTATCACCGGTCAAATGCCAGGTTATAGACCGTAGAAATACAGTTTTTATATGTTTTATCTTGTCTTCACAAGACATCGCATATTGGCGCCGAACTGACACTTTTAAACACGACAGTTTGAGCATGCGCTGTGGAGCTTtgttactagctagctactgtaaaaATGGCGTTAAGCAAAACCTTTGGGCAGAAACCGATTAAATTTCAGTTAGAGCAAGATGGAGACTTTTATATGGTTGGATCAGAGGTTGGAAACTACCTGCGTATGTTCAGGGGCTCCCTGTATAAAAGGTACCCATCACTCTCGAGGAGGTTAGCCtcagtagaggagaggaagaaaattGTAGCATCATCGCACGCCACAAGTGTGACTCTGCTGAAGGCCTCCGAATGTGAAGAGATTTTCGAGGGGAACGATGAGAAGTACAAAGCTGTTTCCATCAGCACAGAACCACCGGCCTACCTCAGGGAGCAGAAGGGGAAGAGGAACAGCCAGTGGGTCCCCACACTGCCCAACAGCTCCCACCACCTGGACGCTGTTCCCTGCTCCACCACCATCAACCGCAACCGCATGGGCCGCGACAAGAAGAGGACCTTCCCCCTGTGCTTTGACGACCACGACCCGGCGGTGATCCACGAGAACGCGTCTCAGGCCGAGGTGCTGGTTCCCATCCGTCTGGACATGGAGATTGATGGGCAGAAGCTCAGAGATGCGTTCACCTGGAACATGAATGAGAAGCTGATGACCCCGGAGATGTTTGCAGAGATCCTGTGTGACGACCTGGACCTGAACCCACTGGCCTTCGTCCCGGCCATTGCCTCAGCCATCCGCCAGCAGATAGAGTCCTACCCCACAGACAGCATCCTGGACGAGCAGACCGACCAGAGGGTCATCATCAagctGAATATCCACGTGGGGAACATCTCCTTGGTGGACCAGTTTGAGTGGGACATGTCGGAGAGGGAGAACTCTCCGGAGACGTTTGCCCTCAAGCTGTGCTCCGAGCTGGGCCTGGGAGGAGAGTTTGTCACCACCATCGCCTACAGCATCCGTGGCCAGCTCAGCTGGCACCAGAGGACGTACGccttcagTGAGAATCCCCTGCCTACGGTGGAAATCGCCATCCGCAACACAGGCGACGCTGACACATggtgccccctgctggagacccTGACAGACGCAGAGATGGAGAAGAAGATCAGGGACCAGGACAGGAACACTAGaCGAATGAGGCGACTTGCCAACACTGCCCCTGCCTGGTAGAGAGAAGCAGCAGTAAGCTACTACAGAGCCTCTGGTCAACAAATGGTCAACCCCAATGGGCcctctgagagacacacacaaactcaacAATAGACATTCCACTGGTCCCTTCTTACAGCCCCCATAATGTTAACTAACTCTACGCTTGGCTGTCATGTCCTCTGGACACTGATCCAGGACCATTGTCACATACCTAACTCCATTAATTACAAGAATTACATTTGATCCAGGAACAGGGACTTTTGTTGAAGGAGCCTTATCCATTTCTATTGCCGAATCCAAGCCCCTGTAGTGGTTCAAGCCGCTACTCATCTCTGATGAGACGAGGTGGTAAATGAAAGGTGCCATGGGTAGAGTGTATGGATCAGAATGAAATGTAGCCTTTGTTGTTTCTACGGACTCACCATCTAAGTGAGCTCAAACTGTAATACTGCTTTGGTGCACTCGTATCCCTCTTGATGGATGATGCAGATAGATGACTGACTGACCTGTCCGTTTTAATAGAAACTAATGTTACACTCGAGCAGACTCAACTCTTGCAAATAATGTAAAGTTATGTATTGTGCTTTCTTTTTGTAAAGGTGCTGATACTTTTAGTCaacgtttttgttttgtttcctttTTTAATAAAATGCCATAGACTTCATTACAGATGTAGTTTGTTGCTCTACAATCGTCAA

Function

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0006281 DNA repair biological_process
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421199 lncRNA downstream 3208 14310290 ~ 14310506 (-) True G370622
TU420917 lncRNA downstream 62468 14244425 ~ 14251246 (-) True G370352
TU420870 lncRNA downstream 82126 14226627 ~ 14231588 (-) False G370315
TU421225 lncRNA upstream 5991 14339296 ~ 14339515 (-) True G370646
TU421227 lncRNA upstream 8906 14342211 ~ 14342538 (-) True G370648
TU421193 lncRNA upstream 13510 14346815 ~ 14350188 (-) True LOC110523260
TU421231 lncRNA upstream 22121 14355426 ~ 14356293 (-) True G370652
TU421232 lncRNA upstream 24141 14357446 ~ 14358123 (-) True G370653
XM_036976849.1 mRNA downstream 54582 14255800 ~ 14259132 (-) True chchd10
XR_005051649.1 mRNA downstream 69979 14243054 ~ 14243735 (-) True LOC118964567
XR_005051648.1 mRNA downstream 88369 14222189 ~ 14225345 (-) True LOC118964566
XR_005051647.1 mRNA downstream 91096 14222189 ~ 14222618 (-) False LOC118964566
XR_005051646.1 mRNA downstream 141240 14170421 ~ 14172474 (-) True LOC118964565
XR_002473417.2 mRNA upstream 16011 14349316 ~ 14350138 (-) False LOC110523260
XR_002473416.2 mRNA upstream 16011 14349316 ~ 14350281 (-) False LOC110523260
XM_021601803.2 mRNA upstream 96164 14429469 ~ 14433555 (-) False dync2i2
XM_021601805.2 mRNA upstream 96164 14429469 ~ 14433561 (-) False dync2i2
XM_021601804.2 mRNA upstream 96164 14429469 ~ 14433766 (-) True dync2i2
TU420894 other downstream 105009 14207190 ~ 14208705 (-) True G370333
TU419308 other downstream 1607622 12705566 ~ 12706092 (-) False G368921
TU419309 other downstream 1607622 12705566 ~ 12706092 (-) True G368921
TU418958 other downstream 2176924 12134052 ~ 12136790 (-) True G368612
TU415770 other downstream 5123616 9189669 ~ 9190098 (-) True G365752
TU421214 other upstream 94033 14427338 ~ 14428591 (-) True G370635
TU421926 other upstream 659823 14993128 ~ 14995159 (-) True LOC110524957
TU421988 other upstream 790170 15123475 ~ 15124789 (-) True G371294
TU422760 other upstream 1362787 15696092 ~ 15698329 (-) True LOC110523302
TU422972 other upstream 1642301 15975606 ~ 15976116 (-) True G372122

Expression Profile