RNA id: TCONS_00033523


Basic Information

Item Value
RNA id TCONS_00033523
length 659
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_015410
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23025321 ~ 23026978 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTAGTCTCTCAATACTACTCTTGTACTGGACAACACTAGTCTCTCGTCACTAGTCTCTTACTGGACAACGCTAGTCTCTCATCACTACTCTCTTACTGGACAACACTAGTCATCACTACTCTTactggacatcactagtctcttactggACAACACTAGTCATCAGTAGTCTCTCTTCACTAGTCTTTTGCTGGGCAACACTAGTCTCTtatcactagtctcttactggACAACACTAGTCtctcatcactagtctcttactgCACAACACTAGTCgctcatcactagtctcttactgCACAACAGTAGTCTCTCGTCACTAGTCTCTTACTGGACAGCACTAGTCTCTCATCACTGGTCTCTTACTGGACAACACTAATCTCGCGTCACTAGTCTCTTACTGGACAACAGTAGTCTCTCGTCACTAGTCTCTTACTGGACAACACTAGTCTCTCATCACTGGTCTCTTACTGGACAACAGTAGTCTCTCGTCACTAGTCTCTTACTGGACAACTCTAGTCTTTtatcactagtctcttactgTACAACACTAGTCTCTCGTCACTAGTCTCTTACAGCACAACTCTAGTCTTTTATATATCTAGTCTCTTACTAGACAACAGTAGTCTCTtatcactagtctcttactggACAACGC

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033522 lncRNA upstream 10705 23006792 ~ 23014616 (+) False XLOC_015409
TCONS_00030845 lncRNA upstream 10705 23011833 ~ 23014616 (+) True XLOC_015409
TCONS_00030842 lncRNA upstream 11277 23006792 ~ 23014044 (+) False XLOC_015409
TCONS_00033521 lncRNA upstream 33292 22985130 ~ 22992029 (+) False XLOC_015408
TCONS_00033519 lncRNA upstream 108937 22911192 ~ 22916384 (+) False XLOC_015407
TCONS_00033524 lncRNA downstream 129034 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00033525 lncRNA downstream 129036 23156014 ~ 23184804 (+) False XLOC_015414
TCONS_00030853 lncRNA downstream 129069 23156047 ~ 23184804 (+) True XLOC_015414
TCONS_00033526 lncRNA downstream 379475 23406453 ~ 23410848 (+) False XLOC_015418
TCONS_00033528 lncRNA downstream 379475 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00030843 mRNA upstream 369 23006792 ~ 23024952 (+) False XLOC_015409
TCONS_00030844 mRNA upstream 2201 23007675 ~ 23023120 (+) False XLOC_015409
TCONS_00030840 mRNA upstream 164143 22851832 ~ 22861178 (+) True XLOC_015406
TCONS_00030839 mRNA upstream 178768 22823952 ~ 22846553 (+) True XLOC_015405
TCONS_00030838 mRNA upstream 199168 22808946 ~ 22826153 (+) False XLOC_015405
TCONS_00030846 mRNA downstream 12063 23039041 ~ 23078748 (+) False XLOC_015411
TCONS_00030847 mRNA downstream 21642 23048620 ~ 23077466 (+) False XLOC_015411
TCONS_00030848 mRNA downstream 35107 23062085 ~ 23077483 (+) True XLOC_015411
TCONS_00030849 mRNA downstream 54269 23081247 ~ 23099643 (+) False XLOC_015412
TCONS_00030850 mRNA downstream 54270 23081248 ~ 23099644 (+) False XLOC_015412
TCONS_00030841 other upstream 33800 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 358621 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1649727 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1782303 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1847656 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030855 other downstream 230799 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 247354 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 652895 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 986272 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 1321611 24348589 ~ 24351040 (+) True XLOC_015440

Expression Profile

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