RNA id: TU421193


Basic Information

Item Value
RNA id TU421193
length 3129
lncRNA type read_through
GC content 0.41
exon number 3
gene id LOC110523260
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14346815 ~ 14350281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAAACCCCGGGTGTTGCAATCGTGACACGTTGGCACTGAGAAAAGCTTATTTTGGATACCAAAAAGTGTGTGTAGTGATCAACCATGGTGATCAGTTCGGCTCAGCTGCTTAACATTATGGAGGATCTGGACTCAGACGGGTTGAAGAGATTTCAGTGGTTCCTGACTCAGGGTGTGTTGAATGACTATCCTCCCATCCCAAAGAGCTTGCTGGAGAATAGAGACAGGATGGACACAGTGGATAAGATGGTGCAGAGCTACAGACTGGACGGTGCTGTGACAATCACTCTGAAGATCCTGGAGAAGATGAACCAGAATAGTCTCGCTGGGaagttaaaaaaatacatatagCTAGAGAGAAGAGGCTCAGTGGCTCTACTGACCAAGCTGATAAATAAGGATAAAGCTAAGGGGAGATTCTACCTGGCCCTGTCAGAGGACCTGGAGAAGCAGACAACATCCTGAAAGATGTCATGCATACAGCAAGATTAAAGGTTTGTTGTTCTGAATTCAACACAAACCAAACGAGAATGAGCAAGAACATCTTCATTTGCCTTGCTGTTTCAAACAAAAGGACATTACTGTATACTAATAAACTGATCCAGCAGGGGTTGTTACAAGGCAAACTTAAGACTAACAATATTGTTTGGAACCCAGGAAGTGTACCTGCTGCCTTGCCAGCTAAttagggatcctaataaatacaaaattgtGTAATGTATGGACAGCAAGCACACAGTCGAAATATACATTTATTTGTTTGCCTTCACTTGTACATGACTGTTTGACAAGATTAGGCCTAATACTGGACTGTTGTGGGCTGTATTGCATGGAAAGATagcctttttttcttttttaacaTTAGCTTGGTTTACAGTGCACTGTTCCTAAAtatggagtcacttagaaatgtcattgtttttgaaagaaatacacatttttatccattaaaataacgtacaatttatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaaaggcagatctggtccttctttggacaccgtgttaacaaacctccaaacggggttcaacgccatacaacactcctttcgtgggctccaactgctcttaaatgctagtaaaaataAGTgcctgctcttcaaccgattgctgcccgcaccctcagcttcctatttcgcaacaaagcctccttcactcatgccgccaaacatacccttgtaaaactgactatcctaccgatccttgatttaggcgatgtcatttacacaATAGCCCTCAACACTCTTCTCATCAAATTGGAtgtagtttatcacagtgccatccgtatactctcgttggctggccctcactacatatccgtcgcaaacccactggctccaggtcatctataagtctttgctaggtaaagctccgccttatctcagctcattggtcaccatagcaacacccacctgcagcatgcgctccagcaggtacagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaaccgtgtgtgaaaaccttgtgaaaacttacagaaaacatttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccatcatttgcaaacaaattcataaaaaatcctacaatgtgattttctggattttttcccccctcattttgtctgtcatagttgaagtgtacctatgatgaaaatcacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatattgcacTAGtcttccccaaagccaacacttcctttggccgccttgcCTTCCAGTGCTCTGCTGCCAacgactggaacaaattgcaaaaatcttcgattacaggctcaaaatggccagaaacaaataattttcttctgaaactcgtcagtctattcttattcttgttttggggttttaggctgagtttctgtacagcactttgagatatcagctgatgtaagaagggctgtataaatcaatttgatttgattctgaaaAATTAAGgcaattccatgtgagaaattgccaagaaactgaggatctcgtacaacgttgtgtactactcctttcacagaacagcgcaaactggctctaaccagaatagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacattaatgcctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaatagtacccacaaaacaccagtctcaacgtcaacagtgaagaggcatctccgggatgctggccttctaggcagagttgcaaagaaaaagccctatctcagactggccaataaaaataaaatatggtttaaagaacacagacactggacagagaaactctgtatttatcaatttgatgttattttagatggacaaaagaaacatgcttttctttcaaaaacaaggacatttctaagtgacggtTGTGTATGTTAGTCATTATGATTCTTACCACCAAAACAgcagagaaaaaaaatcaataaCCACATTATCCAATGTTCTTGTGATATGAATGAATAGTTGAAATGACATAGTAATAACATTGAATACAGGTCAATTGACTTACATTTCCTCTAATCAGGGTATTTTATCATCTAGCTTGTCAAATGTGTGGTTCTGTTTACTATGGCAGACatgtacagtaatgtacagtaataTAAATGAATGAGTCCTGGTTCCAGGACATAGTTTCATGGGGACAAATTCCATAATCCTAAAATGCAATGCAAGTCTTATTGGCGACATGTGGCACTCATGTCCAATTGAGTGGTGGAAACACTGACAGGGTTTGTCCTCTCCAATGGCAACTGTTGTGGAATGGATGCTTGAAGTCACTCTGTCGTCCACAGTGCCGCCTACAGGTAACTCATAACAGTACCTTTCTTTCCAACCTGATGAGGCTCCAGTGCATAGAACCTGATCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421227 lncRNA downstream 4277 14342211 ~ 14342538 (-) True G370648
TU421225 lncRNA downstream 7300 14339296 ~ 14339515 (-) True G370646
TU421199 lncRNA downstream 36309 14310290 ~ 14310506 (-) True G370622
TU420917 lncRNA downstream 95569 14244425 ~ 14251246 (-) True G370352
TU420871 lncRNA downstream 115227 14226627 ~ 14231588 (-) False G370315
TU421231 lncRNA upstream 5238 14355426 ~ 14356293 (-) True G370652
TU421232 lncRNA upstream 7258 14357446 ~ 14358123 (-) True G370653
TU421235 lncRNA upstream 13349 14363537 ~ 14365844 (-) True G370656
TU421237 lncRNA upstream 18437 14368625 ~ 14368840 (-) True G370658
TU421238 lncRNA upstream 19879 14370067 ~ 14370272 (-) True G370659
XM_036976851.1 mRNA downstream 13510 14313714 ~ 14333305 (-) True smarcb1b
XM_036976850.1 mRNA downstream 13515 14313714 ~ 14333300 (-) False smarcb1b
XM_036976849.1 mRNA downstream 87683 14255800 ~ 14259132 (-) True chchd10
XR_005051649.1 mRNA downstream 103080 14243054 ~ 14243735 (-) True LOC118964567
XR_005051648.1 mRNA downstream 121470 14222189 ~ 14225345 (-) True LOC118964566
XM_021601803.2 mRNA upstream 79281 14429469 ~ 14433555 (-) False dync2i2
XM_021601805.2 mRNA upstream 79281 14429469 ~ 14433561 (-) False dync2i2
XM_021601804.2 mRNA upstream 79281 14429469 ~ 14433766 (-) True dync2i2
XM_036976862.1 mRNA upstream 84058 14434246 ~ 14438049 (-) False LOC110523265
XM_036976863.1 mRNA upstream 84058 14434246 ~ 14438050 (-) False LOC110523265
TU420894 other downstream 138110 14207190 ~ 14208705 (-) True G370333
TU419308 other downstream 1640723 12705566 ~ 12706092 (-) False G368921
TU419309 other downstream 1640723 12705566 ~ 12706092 (-) True G368921
TU418958 other downstream 2210025 12134052 ~ 12136790 (-) True G368612
TU415770 other downstream 5156717 9189669 ~ 9190098 (-) True G365752
TU421214 other upstream 77150 14427338 ~ 14428591 (-) True G370635
TU421926 other upstream 642940 14993128 ~ 14995159 (-) True LOC110524957
TU421988 other upstream 773287 15123475 ~ 15124789 (-) True G371294
TU422760 other upstream 1345904 15696092 ~ 15698329 (-) True LOC110523302
TU422972 other upstream 1625418 15975606 ~ 15976116 (-) True G372122

Expression Profile