RNA id: XM_021601790.2


Basic Information

Item Value
RNA id XM_021601790.2
length 3644
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110523259
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14351453 ~ 14367540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAATCACCTATCAGAATGCTAGTCTACCGGAAGAATGGTGTTTTGGAGGAAGCTTTGCCTGTTGAATGAAATGCTAGCAAGCTAAGTAAAATATAATTCACAATATACATAATCTACCATTTCGAGGAATATTTGGGTTTTCACATGaaaaaaGCACTGAGAACCCGATCAATCTCACCACCCCTACATGTGCACGTGAATGAGACCACGCCTGTGCATGTGAAGAAGAGTAGGAGCCCTGCCAGGACACCACTGGGTAAGACTAAGGGCGATGGAGGGAACCTGCGACCTACTGCAAAGGTCAAGACACGAGTGCCGTGGATACCGCCTGGGAAGGCCTCCATACGGGATGCCTCCTACAAATGGGAGGGGCCTACTCATCGTCTGGAGATCACACCATTACCTCAGTCTGAGATCTCCCACTCTCTGCTGCGATTTGCCGACCTctcgtcagaggaggaggaagtgctGCATGGACGAATCAACCAGTATGAGAGGAAGATTGACAGCCTGATGACTGAGgtggagCTGCGAAGGAAGGAGCAGCTGCTGGAGCGGCAGTCTGAGAAACTTAGCGCCTCCCAGCAGGTCAtcaaggagcaggaggaggagctggCCGAGGTGGCCAATGAGCTAGAGGTCACGGAGAGGGAGAACTCCCGTCTGCGCCACTCCATGGAGAAGATGCTGGACGAGAGCGACTGCACCAGCAGACTAGAGAGGTCTATGGAGTCGATGCAGCTGGAGAAGGACACTCTGCTCAGGAAGTTGATGGAGGCTGAGATAGATGGGACAGAAGCTGCAATACAGGTGTCAGCCCTCAGAGAGACCGTCACTAAGATGAGGAGTGTCAGCACCAGTAGGATGTCTGGGACTGAGTCTTCCCTCCTGGCGCGTCAGAAGGAGCTGCTGCTCCAGAAATTGGAGACGTTTGAGACCACCAACCGCACGCTGCGCCACCTACTGAGGGAACAGCACGGACGTGAGCTGGAATCCACGAGGATGTCAGAACAGAAAGATGTACTTCTGAAGAGGCTGACAGACACAGAGGCAGAAAACTCGAATATTGTGGTGAAActgcaagagaaagagagggaggtgaagcaACTGACTACGCTTCTGGACACAGAGAAGGAGAATGCTAAGACCACAGGCGAACTGTCTAAAGTGCTGGAGTCTACTCGGGCACACTTGCAGAGCCAGTTACGCTGCAAAGAGGCTGACAACAACCGCCTTGCTGTGCAAATcaagAACCTGGAGCGGGCGGCCAGTCAGCAGCAGGGAGAGATGGGTCACCTGCTGGAGCAGTTGCGGGGTCTGAAACTTCAGGCGGAGGCCGACAAAGAGGACCTGAAGAGGGCCACACGGGCCCAGAAACACCGGGCTGAACGCAGCGAAGATACCGCCGGGCAGCTCAGCACCCAGCTACTGGATGtgGAGAATCAGATGGCAGAGGCCCTatcagcagcagagaactggcGTGGTCGCCACGCCCAGGAAATGAAGGACAAGACTCAGCTAGAGATGGAGGTCTCAGTCCTCAAcagCCAAATGTCAGACCTGACACAGCAGCTCCATGGGAGAGAGGACAAGGGCCGGGCCGAGAGAGAGGGGCTCCTGGACCACCTGCACAGTCTCACCACAGAGGGCACCCACGCCAGGCTACAGAACCAGAGCCTCAAGgccaggttATCTGCTGTGGAGGAGAAGCTGGCTCTGTCCCAGTCAGAGGTACAACAAGTCAAAGCCTCTGTGAAGCAATACGAGAGCCTGGTAGACAGCTATAAGACCcagACGCGGGCGAAGGCGGACGAGTATTGTGCCAGGCTGGGACAAACGGAATGCGAGGCGCGGGAGGTCCGggaccagatggagagggagtTGGAGGTGGTGCGTAGGGAGCTGCTGGGCCGGCTGACAGAGCTGGAGCCTCTTCCTGAGGCACTGCGGCGCACCGAGGTCCTACTGGAGGAAGCTCAGGACAGGGAACACGCCCAGGAGAAACACAGCACTGAGCTGACCACTGCCCTGTCCGACCTGCGCATGAAggtggaGCAACAAGGCACCCAGGTGGAGCTGGTGAGAGTGAAGAACTCGGTGCTGTTGGAGGAGAACAAACAGCTGCAAAACTGTGTGGAGAGTCTAGAGAGGAAGTTGGAGGAGGCCACCAGTCAAAACAGGGACCTGGCGGGGGTGATCGCCAAGCGGGAGGAGACCATCCACAGCAACCATCTCTGTCTGGAGGAGAAGTCCCGTGAGTGCACCCACCTGACCCGCCAGCTGGAGGAGGCTTTAGAAGACGCCCGACTACAGGTGTCCAACACCCGGGAGCGTGCGTCCACCAAAGAGCGCTCCACCCAGTCCAAGGTGGTGGACCTAGAGACACAGTTGAGCAGAACCGCCACAGAACTCACCACCCTACGCCGTAGCAAAGAGGAGGTGGAGCGGCGATACCAGTCGCGTCTGCAGGATTTGAAGGATCGTCTGGAGCAGTCAGACAGCATCAACAGGAGTCTGCAGAACTACGTCCAGTTCCTCAAAGCATCCTATGCCAACGTGTTCGGCGACTTAGTCCTCACCAGCTCTCTGCGGGCCCCCTCTCCTATCTGAGGGGACCATCCCCAAAGATTctctcagaacacacacacacagacacctatCCCATCTGAGGATACTCTCCCCAAACACACTTATTTATCCAGGTCCATTTTCAGAGGGCTCTTTTCATCTATATGAAATATGTGGATTTTGAGTGTGTATATGTTACAATTATACAATATCAATATGGCTATAATATATCACTTTTTTCAAGAAAGGAAAGTGCTGTTTGCAGACATTAATAGTTTACACAGTCTTCACTTCCAGCTTGGAAAAGTACACCCAAACACGCTTCAGTCCAGCTAAAACAAAAAAAGGAATCATCTGTTTGGCTGAGGGACTTGGAGATCCAAAAAAAACACTCCTTACCCCAGGACGCTTTAACTAGTGACTATCAGGGAGAATACAGAAAAAGGATCCTTCTGTTTCTGGGTAAATCTGATAAATTTATTGACAGGACCAAAAAAACAATAGGCTTACGTTTAGGCATGAATCACCTTCATCAGAGCCTGACTCCCGGAAAGTCACCAGTtgaataatatatgccatttagcagtcgcttttatccaaagcaacttatgcgtgcatacattttatgtatggGTAGCTCCGGGAATCAaatccacaaccctggcattgctgacgccatgctctaccaactgaagtGTGCTGGGATAAGGAATGTTTTGGGGATTTACTTCCTGCTTGTCTACAGTAATTGTTACAGTTGTCCTATAGTTGTTGATGTCCTACTAAGTCCATTATGTTTTCACCTTTACGGTTCATGATATCTCAGCAAACTATCAttctgtcctgtaccttactgtacaaCACTATATAGCTAGCCACCCACCTAACAAATGTACTGTACCAAACCATAGCTGTCTAGCTACCCTGTCGCATAGTTGTCATATACAGCATccgtctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcatgcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtg

Function

GO: NA

KEGG:

id description
K16479 ODF2; outer dense fiber protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421026 lncRNA upstream 311 14350840 ~ 14351142 (+) True G370455
TU420999 lncRNA upstream 5903 14344984 ~ 14345550 (+) True G370428
TU421025 lncRNA upstream 7506 14343673 ~ 14343947 (+) True G370454
TU421024 lncRNA upstream 7857 14343347 ~ 14343596 (+) True G370453
TU421023 lncRNA upstream 11871 14339349 ~ 14339582 (+) True G370452
TU420974 lncRNA downstream 1469 14369009 ~ 14369485 (+) True G370403
TU421028 lncRNA downstream 1962 14369502 ~ 14369738 (+) True G370457
TU421029 lncRNA downstream 2455 14369995 ~ 14370231 (+) True G370458
TU421043 lncRNA downstream 34299 14401839 ~ 14402147 (+) True G370472
TU420978 lncRNA downstream 63307 14430847 ~ 14431069 (+) True G370407
XM_021601787.2 mRNA upstream 4041 14345633 ~ 14347412 (+) True LOC110523258
XM_021601785.2 mRNA upstream 42734 14272305 ~ 14308719 (+) True mmp11b
XM_036976847.1 mRNA upstream 122145 14172563 ~ 14229308 (+) False LOC110523253
XM_021601793.2 mRNA downstream 9419 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA downstream 14928 14382468 ~ 14429468 (+) False LOC110523261
XM_036976853.1 mRNA downstream 23529 14391069 ~ 14429468 (+) False LOC110523261
XM_036976854.1 mRNA downstream 23529 14391069 ~ 14429468 (+) False LOC110523261
XM_036976855.1 mRNA downstream 23529 14391069 ~ 14429468 (+) False LOC110523261
TU420951 other upstream 25558 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 92320 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 582157 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1242319 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2471418 11878329 ~ 11880035 (+) True G367684
TU420985 other downstream 132 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 437121 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 680638 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 756750 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1424019 15791559 ~ 15795122 (+) False G371615

Expression Profile