RNA id: TCONS_00030846


Basic Information

Item Value
RNA id TCONS_00030846
length 3222
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_015411
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23039041 ~ 23078748 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTTCACAACTTAGAGGCAGCGATGTGATCGGCGGCAGCGGAGGAAACGCGAGAGCTGCACGGAGAGGCTTAAAGAGACATCAGCGAAGAGGGAGAAAAAATGATAATGGCTTCAAGGAATGAGCATTAAAACCGACCAAATGGGGACTGTCATCGACTAATACCACAGAGATCTAGATATCGTAAGATGTACTTCTGATGTGCCGGCAGTTTCCTCTCAACGGCAAGTTTGATATGCTGTGTGTTCATCCATGGACACAGGGAATGCCTGACAAATCTCTGCAGAACCACCTGGAGTGGGTGCAAAGGATGGAAACCGACGCTGGACAGCATCTCACTTTCACCAGCTAGGGTCGTGCGCATGTGTCCATCTCCCAAAGAACGAGCTCCTCTGCGGTTGGATTTAAGGAAGATTTCCATATGATGTCCTCATCCTAAATCACATCACCCTTGGATTCCACCATCAATAAAAGCCGTTCATGTGTAGAGCCATATTGTGGATAAGCCATTCCCTCCATTCTCTCTTTCTCTAAATTCCTCTCCTCCATCCCATTCCCCATACCCCTGTTGCTAGTTGTTTTGGTGGCTCTGTGATTTTATGGCAGTGGAGTAATCGTGGAGAGGCCGGGGTATCACAAGCTTATGGATTTTGAtaagagaggaggaggaggaggaaaaggagAAGCGGAGGACGGAAAGAGAATGTCTAAGACTGGCGGGAGCAGGACAGGGCATGGGGGCAGCCGAGGCTCCGGGAACAACACTGGAGTGCTTATGGTTGGCCCGAATTTTCGGGTGGGAAAGAAGATTGGCTGCGGGAACTTCGGCGAGCTTCGACTCGGGAAGAATCTTTACACTAATGAATATGTGGCCATTAAACTGGAGCCAATCAAATCAAGAGCACCCCAACTCCATCTCGAATACAGGTTTTACAAGCAGTTGGGAAATGCAGAGGGTGTTCCTCAGGTCTACTATTTCGGGCCTTGTGGGAAATATAATGCCATGGTGCTGGAGCTGCTGGGACCCAGTCTAGAGGACCTTTTTGACCTCTGCGACAGAACCTTTTCACTTAAGACTGTCCTCATGATAGCCATTCAGCTGATCACACGGATGGAGTTTGTGCACACAAGAAGTCTGATCTACAGGGATGTTAAGCCTGAAAACTTCTTGGTGGGCCGACCGGGGACCAAGAGGCAGCATACAATCCACATCATCGACTTTGGACTTGCCAAAGAATACATCGACCCCGAGACCAAAAAACACATCCCTTACAGGGAGCACAAGAGTTTAACAGGGACGGCTCGCTACATGAGCATCAACACACACCTGGGGAAGGAGCAAAGCAGGCGGGATGATTTGGAGGCGCTAGGTCATATGTTTATGTACTTCCTACGAGGCAGTCTGCCTTGGCAAGGCTTGAAGgcTGACACGTTGAAGGAGCGATATCAGAAAATCGGAGACACCAAAAGGGCAACCCCTATAGAAGTGCTCTGTGAGAGTTTCCCTGAAATGGCCACCTACCTACGCTACGTGCGGAGACTGGATTTCTTTGAAAGACCGGATTATGAATACTTGAGAAAACTCTTTACAGACCTCTTCGACAGAAACGGCTATGTTTTCGACTATGAATATGACTGGGTCGGCAAGCCACTGCCGACTCCAATAGGACCCATGCCTAGTGACACACCACTGCAGCCCAGCAACAGAGACAAAGCACAACCACAGACCAAAAACCAGGTTATGAGCTCGACCAACGGAGAAGTAAATACAGACGATCCCACAGCGGGACACTCCAACGCTCCCATAACTGCCCCAGCTGAGGTGGAGGTGGCCGATGATACAAAGTGCTGTTGTTTTTtcaagaggaggaagaggaaagCGCTCCAGCGGCACAAGTGAGGAGGAACATCTTTGAAACGTTAAAGTCACTGGTGCgtttaaagaaaaactaaaaagaaaaaaaaaaactaaagcaaagGACTCGAGCTGAAACGTGGAGCAACTCCCTCCCTTTCTGTCTCTGCTCTACTTCAGAACAGAAAGTCACTGCCTCACTTTCGGCATCCACTCAGAGAGACTCACCTCAGTACTCTGACACTCTTTCTAAAGAAACAATTCAGTGgaacaaatacatatatttgtaCAATGTGGGACACCAGAGGAGACTTCAGTGGTCAGATATAAGACAAGATATATACGTTATGTGACTTAAACCCAGATGGACTGTTTAAACTTGTATTTTAGAAAACCATTATTTGAGAATTTAAAGGCAAGCAGACTCGcatacacgtacacacacagacatctgTTCACCTCGACACACTGGCTGGATGAGTGAGTGAGTAATGTGCTCCATggtgttttcttttcttattttttttattattataatgggATCAAAATCTGTGAGGAAAGACTGACGTATGGAGAAATGTACATCGGAATCAGACAAACCAATTGTGTAAATTGTCTTTCcttttttctctcattttatttttgtaatttaagaaGTTGTTTTGAAGATTTGCTCTCCTTGAATTGAACAGTTTTACTTATGTTGTAGAaagtgtgaacttttttttttttttaacccgcTCCTAgtgtttattttctctctctcttttttttttacttccttgTTTTTTCCTGTCGATGAGGAGGTTGTACACAGTGGCTGGTCTCAGGTACTGTGGGAGATGGAGAGAAACAAAATCATTACCTCTCCTCTGTGAATTGCACTTTTAgggaggaaaaaaacaaaacaaaaaaaaagcaaaccgttatgccattgaaatgaatgggaatAAAAGCAAGACGTGGGATCATTTACACAGCAGGCTGGTCTCTCCCAAAGGGACGAAAGTGATTCTCTCAGTCAAACTTGTGCTTTTGTTGTTTTTCGCATTAGATTATGTTACCTGGGAATCATAGTTTGTGCCTTTCCAAGTAAACATTTAACACTAACGTGTCCCTCTCTACGATTCCTATCCAGGTGAGGCGTCCATGGCCCTCTCAGATGGTTTGTTCTGCGCTCCATGCCAGTCTTTTGAGTCTGTTGGCATTTCTCAGATTTCTTTTTCACTGTTGTAAAGTGTATCATAGCAAAGCTCCATGACTGCGCGAGTCTGTGGGTTTATACGCAGTAACAGAGGTTGCCTATCAGAGTGAGGATGTGTATTGATTTACATACCTATTAAATGTTGCTTTTCTTCTATGCCTCA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006897 endocytosis biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6445 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including Wnt signaling pathway; peptidyl-serine phosphorylation; and positive regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Is expressed in nervous system; otic vesicle; pectoral fin; presumptive neural retina; and solid lens vesicle. Orthologous to human CSNK1G2 (casein kinase 1 gamma 2).

Ensembl:

ensembl_id ENSDART00000056921

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033523 lncRNA upstream 12063 23025321 ~ 23026978 (+) True XLOC_015410
TCONS_00033522 lncRNA upstream 24425 23006792 ~ 23014616 (+) False XLOC_015409
TCONS_00030845 lncRNA upstream 24425 23011833 ~ 23014616 (+) True XLOC_015409
TCONS_00030842 lncRNA upstream 24997 23006792 ~ 23014044 (+) False XLOC_015409
TCONS_00033521 lncRNA upstream 47012 22985130 ~ 22992029 (+) False XLOC_015408
TCONS_00033524 lncRNA downstream 77264 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00033525 lncRNA downstream 77266 23156014 ~ 23184804 (+) False XLOC_015414
TCONS_00030853 lncRNA downstream 77299 23156047 ~ 23184804 (+) True XLOC_015414
TCONS_00033526 lncRNA downstream 327705 23406453 ~ 23410848 (+) False XLOC_015418
TCONS_00033528 lncRNA downstream 327705 23406453 ~ 23442528 (+) False XLOC_015418
TCONS_00030843 mRNA upstream 14089 23006792 ~ 23024952 (+) False XLOC_015409
TCONS_00030844 mRNA upstream 15921 23007675 ~ 23023120 (+) False XLOC_015409
TCONS_00030840 mRNA upstream 177863 22851832 ~ 22861178 (+) True XLOC_015406
TCONS_00030839 mRNA upstream 192488 22823952 ~ 22846553 (+) True XLOC_015405
TCONS_00030838 mRNA upstream 212888 22808946 ~ 22826153 (+) False XLOC_015405
TCONS_00030849 mRNA downstream 2499 23081247 ~ 23099643 (+) False XLOC_015412
TCONS_00030850 mRNA downstream 2500 23081248 ~ 23099644 (+) False XLOC_015412
TCONS_00030851 mRNA downstream 2654 23081402 ~ 23103149 (+) True XLOC_015412
TCONS_00030852 mRNA downstream 51641 23130389 ~ 23132134 (+) True XLOC_015413
TCONS_00030854 mRNA downstream 144191 23222939 ~ 23293501 (+) False XLOC_015415
TCONS_00030841 other upstream 47520 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 372341 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1663447 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1796023 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1861376 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030855 other downstream 179029 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 195584 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 601125 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 934502 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 1269841 24348589 ~ 24351040 (+) True XLOC_015440

Expression Profile

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