RNA id: XM_036976858.1


Basic Information

Item Value
RNA id XM_036976858.1
length 7696
RNA type mRNA
GC content 0.58
exon number 48
gene id LOC110523261
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14376959 ~ 14429468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAATGGATACCAGTGGGGTGAAAGTGCTGGAGTCTGCTGATGACATCCAGGAGCGCCGGCAGCAGGTGTTGGACCGCTACCGGCGCTTCAAGGAGCTGTCGGGCGTGCGACGGCAGAAGCTGGAGGACTCGTACCGCTTCCAGTTCTTCCGCCGCGATGCTGACGAGCTGGAGAAGTGGATCCAGGAGAAGCTGCAGATTGCCTCTGATGAGAACTACAAGGACCCTACCAACCTCCAGGGCAAGCTCCAGAAACATCAGGCCTTTGAGGCGGAGGTGCAGGCCAACGCTGGAGCCATCATTAAGCTAGACGAGACTGGCAACCTTATGATCTCCGAAGGCCACTTTGCCTCCGAAACCATCCGCACTCGTCTGGAGGAGCTTCACCGTCTTTGGGACATGCTGCTGCAGAAGACCAAGGAGAAGGGTGTCCGTCTActtcaggcccagaagctagtgCAGTACCTGCGCGAGTGTGAGGATGCCCTGGACTGGATCAGTGACAAGGAGGCCATGGCCACCTCTGAGGAGCTGGGCCAGGACCTGGAGCACGTAGAGGTGCTACAGAAGAAGTTTGAGGAGTTCCAGACGGACCTGGCAGCCCACGAGGAGCGTGTGAACGAGGTGAACCAGCTGGCGGGCAAGTTGAGCCAGGAGTCCCACCCCGAGGCGGAGCTCATCGTTCGCAAGCAGGAGGAGGTGAACGCCGCCTGGCAGAGGCTCAAGGGCCTGGCGCAGCAGAGGCAGGGCAGGCTGTTCGGAGCCGCCGAGGTGCAGAGATTTAACAGGGATGTGGACGAGACCATTAGCTGGATCAAGGAGAAGGAGCAGCTCATGGCATCCGATGACTTTGGCCGGGACCTGGCCAGCGTTCAGGCTCTGCTGCGCAAGCATGAGGgcctggagagagacctggctgCCCTCGAGGACAAGGTCAACACTCTGGGCGGAGAGGCTGAACGTCTGCAGCAGACCCACCCCCAGAACGCCTCCCAGATCCACCTGAAGAGGGATGAGCTCATCACCAACTGGGAGCAGATCCGCACGCTGGCCGCCGAGCGCCACGCCCGCCTCAACGACTCCTACAGGCTGCAGCGCTACACTTCAGACTTCCGTGACCTGACCAGCTGGGTGACGGAGATGAAGGCCCTGATCAACGCTGATGAGCTGGCCAACGACGTGGCTGGAGCTGAGGCTCTCCTCGACCGCCACCAGGAACACAAGGGTGAGATTGACGCCCATGAGGACAGCTTCAAAGCCACGGACGAGGCTGGCAAGGCTCTGCTCAACACTGGACACTACGCCTCAGAGGAGGTCAAGGAGAAGCTGGGTGTACTGACTGAGGAGAAGGAGTCTCTGTTGGAGCTGTGGGAGGTGCGCAGGCAGCAGTACGAGCAGTGCATGGACCTGCAGCTCTTCTACAGGGACACGGAGCAGGTCGACAACTGGATGAGCAAGCAAGAGGCGTTCCTTCTGAACGAGGATCTTGGTGACTCTCTGGACAGCGTGGAGGCCCTGCTGAAGAAACACGAGGACTTTGAGAAGTCCCTCAGCGCCCAGGAGGAGAAGATCACTGCCCTGGATGAATTTGCCACCAAACTGATCCAGAACAACCACTACGCCAAGGAGGATGTGGCCACTCGTAGAGATGCTCTGCTGAGCCGCCGTAACGCCCTGCATGAGCGTGCCCAGTCCCGCCGCGCCGCCCTGGAGGACTCCTTCCACTTGCAGCAGTTCTCCCGCGACTCGGACGAGCTCAAGAGCTGGATCAATGAGAAGATGAAGACGGCCACCGACGAAGCCTACAAGGATCCGTCCAACTTGCAGGGCAAGGTCCAGAAGCACCAGGCCTTCGAGGCGGAGCTGTCAGCCAACCAGAGCCGCATCGACGCGCTGCAGAAGTCTGGACAGGAGCTCCTGGACGGCAAGCACTACGCCGCCGACGAAGTGTCGGTCCGCATGGATGAGGTCAGCTCCCAGTGGAAGAAGCTGCTGGAGGCCACTGAGCTCAAAGgCATCAAGCTGCGTGAGGCTAACCAGCAGCAGCAGTTCAACAGGAATGTGGAGGACATTGAGCTGTGGCTTTACGAGGTGGAGGGCCACCTGGCCTCCGACGACTACGGCAAGGACCTGACCAGCGTCCAGAACCTGCAGAAGAAACATGCCCTGCTGGAGGCCGATGTGGCCGCACACCAGgaCCGCATTGACGGCATCACCATCCAGGCGCGTCAGTTCCAGGAGGCGGGCCACTTTGACGCCGACAACATCAAGCGCAAGCAGGAGGCGCTGATGGCGCGCTACGACGCCCTTCGCGACCCCATGGCTGCCCGCAAGCAGAAGCTATCGGACTCGCTGCGGCTGCAGCAGCTCTTCAGGGATGTGGAGGACGAGGAGACCTGGATCCGGGAGAAGGAGCCCATCGCCGCCTCCACCAACCGGGGCAAAGACTTGATTGGCGTTCAGAACTTGCTGAAGAAGCACCAGGCCCTGCAAGCGGAGATCGCCGGCCACGAACCCCGCATCAAGGCTGTCACCCAGAAGGGAGAGGCCATGGTGGAGGAAGGTCACTTTGCCGGAGAGGAGGTGAAGGTGAAGCTGGAGGAGCTGAACGGCCGCTGGGACACCCTGAAGGGCAAGGCCGGGCAGCGCAGGCAGGACCTGGAGGATTCGCTGCAGGCCCAGCAGTACTTTGCCGACGCCAACGAGGCAGAGTCCTGGATGAGGGAGAAGGAGCCCATTGTGGGCAGCCCCGACTACGGCAAGGACGAGGACTCTGCTGAGGCCCTGCTGAAGAAGCACGAAGCCCTGATGTCTGATCTGAGTGCCTATGGAAGCAGCATCCAGGCTCTGAAGGAGCAGGCCCAAACCTGTAGGCAACAAGTGGCTCCCACCGATGATGAGACAGGTAAAGAGCTGGTGCTGGCCCTCTATGACTACCAGGAGAAGAGCCCCCGCGAGGTCACCATGAAGAAGGGAGACATCCTCACCCTGCTCAACAGCACTaacaagGACTGGTGGAAGGTGGAGGTGAATGACCGCCAGGGTTTTGTTCCGGCAGCCTACGTCAAGAAGCTGGATCCCACCCAGTCCTCTTCCAGAGAGAACTTGCTGGATGAGCAGGGCAGCATCGGCCTGCGCCAGGATCAGATTGAGAACCAGCCGTTGGCCAAGGAGGCGTGCAGTGTGTCTGTACGCATGAAGCAGGTGGAGGAACTGTACGGAACTCTCCAGGAGCTAGGCGAGAAGCGCAAGGACATGCTGGAGAAGAGCTGTAAGAAGTTCATGCTGTTCCGCGAGGCCAACGAACTACAGCAGTGGATTAACGAGAAGGAGGGAGCCCTCACCAATGAGGAGGTGGGCTCCGACCTGGAGCAGGTGGAGGTGCTGCAGAAGAAGTTTGACGACTTCCAGAAGGACCTGAAGGCCAATGAGTCTCGTCTGAGGGACATCAACAAGGTGGCGTCTGAGCTGGAGTCTGAGGGCCTGATGGCCGAGGAGGCAACCATGGTCCAAGCTCAGgAACAAGTGATGCTGGGATCTGCTCCTGGCCAGGATGAGGCTGATAACAAGAATGCCTCTCCATGGAAGAATGTACGCTTGGCTGTTCAAACGACGGCTAACTTTAATACTATCAAGGAGCTGAACAACCGCTGGAGATCCCTGCAGCAGctggctgaggagaggagcaACATGCTGGGCAGTGCCCACGAAGTGCAGAGGttccacagGGATGCGGATGAGACCAAGGAGTGGATTGAGGAGAAGAACCAAGCGTTGAACACAGACAACTATGGCCACGACCTGGCCAGCGTTCAGGCCCTTCAGCGCAAACACGAGGGCTTTGAGAGAGACCTGGCTGCCCTGGGAGATAAGGTGAACTCCCTGGGGGAGACAGCGGAGCGTCTGATCCAGTCCCACCCGGAGGCAGTGGACGACATCCAGGAGAAGTGCACAGAGCTCAATACGGCCTGGAGCAGTCTGGTAGGGCGCGCCGACCAGCGAAAGGATAAGCTAGGCAACTCCCACGACCTGCAGCGCTTCCTCTCCGACTTCAGGGACCTCATGTCCTGGATCAACGGCATCCGAGGCCTGGTGTCCTCAGAAGAGCTGGCCAAGGACGTGACCGGGGCTGAGGCCCTGCTAGAGAGACACCAGGAGCACCGTACTGAGATCGACGCCCGTGCGGGCACCTTCCAGGCCTTTGAGCAGTTTGGCCAGCAGCTGTTGGCGCGCGGCCACTATGCCAGTCCTGAGATCCAGCAGAAGCTGGAGGCCTTGGACCACGAGAGGGCAGACCTGGAGAAGGCCTGGGTGCAGAGACGAATGATGCTCGACCAGTGCCTGGAGCTCCAGCTGTTCAACCGTGACTGTGAACAGGCTGAGAACTGGATGGCGGCTCGCGAGGCCTTCCTGGCCAGCGACGACAAGGGTGACTCCCTGGACAGCGTGGAGGCTCTCATCAAGAAACACGAGGACTTTGACAAGGCCATCAACGTACAGGAGGAGAAAATCGCTGCTCTGCAGTCCTTTGCAGACCAGCTGGTTGGCGCTGATCATTATGCCAAACCAGAGATATTCAACCGTCGCAATGAAGTCCTGGACAGGTGGCGCCGTCTGAAGGCTCAGATGATTGAGAAGCGCTCCAAGCTGGGCGAGTCCCAGACGCTGCAGCAGTTCAGCCGCGACGTGGACGAGATAGAGGCCTGGATCAGCGAGAAGCTGCAGACAGCTACAGACGAGTCCTATAAGGACCCCACCAACATCCAGCTGTCGAAGCTGCTGAGTAAGCACCAGAAGCACCAGGCCTTCGAGGCGGAGTTGCATGCCAACGCAGACCGCATCCGTGGGGTTATCGACACTGGCAACGCCCTCATCCATAGAGGGGCCTGCTCCGGCAGTGAGGATGCGGTTCagTCACGTCTGGGTGCTCTGGACGAGCAGTGGCAGTTCCTGGTGAACAAGTCGGCAGAGAAGAGCCAGAAGCTGAAAGAAGCCAACAAGCAGCAGAACTTCAACACTGGCATTAAGGACTTTGACTTCTGGCTCTCTGAgGTCGAGGCCCTTCTTGCCTCTGAGGATTATGGCAAAGACCTGGCCTCCGTCAACAACCTGCTGAAGAAACATCAGCTTCTGGAAGCCGACATCTCTGCTCATGAGGATCGTCTGAAGGACCTGAACGGCCAGGCTGACAGCCTGACGGCCAGCACGGCCTTCGACCCCACCCAGGTTAAGGACAAGCGCGACGCTGTCAATGGACGCTTCACCAAGATCAAGAGCATGGCCACTGGCCGCCGTGCAAAGCTCAACGAGTCGCACCGCCTACACCAGTTCTTCAGGGACCTGGACGACGAGGAGTCTTGGATCAAAGAAAAGAAATTGCTAGTGAGTTCGGAGGACTATGGACGTGATTTGACTGGAGTGCAGAATCTGAGGAAGAAACACAAGAGGCTGGAGGCTGAGTTGGGGGCCCATGAGCCGGCCATCCAGTCTGTGCAGGACACAGGGAAGAAGCTGTCCGATGACAACACCATCGGCCAGGATGAGATTGAGCAGAGGCTGGCCCAGTTTGAGGAGCACTGGATGGAGCTGAAGGACCTGGCTGCAGCCAGgGGACAGAGGCTGGAGGAGTCGCTGGAGTACCAGCAGTTTGTTGCGAATGTTGAAGAGGAGGAAGCCTGGATTAACGAGAAGCTGAACCTGGTGGGAAGTGAAGACTACGGGGATACCCTGGCTGCTGTGCAGGGCCTGTTGAAGAAGCATGAGGCGTTTGAGACTGACTTCTCTGTGCACAGGGACAGAGTGAATGACGTGTGTTCCAACGGAGACGAGCTCATCAAGAAGAACAACCACCACGTGGACAGCATCTCAGCCAAGATGGCGTCCCTGCGGGGCAAGGTGTCTGAGCTGGAGAGGGCCGCTGCCATGAGAAAAGCCAAGCTGGATGAGAACTCTGCCTTCTTGCAGTTCAACTGGAAGGCTGACGTGGTGGAGTCCTGGATCGGTGAGAAGGAGAACAGCCTGAAGACGGATGAGTACGGACGAGATCTCTCCTCTGTGCAGACCTTGCTCACTAAGCAGGAGACGTTTGACGCAGGGCTGCAGGCCTTCCAGCAGGAGGGTATCACCAACATCACAGCCCTCAAGGACCAGCTGCTGGCGGCCAAGCACGTCCAGTCCAAGGCCATCGAGACGCGCCACGCTGCCCTCATGAAGCGCTGGAACCAGCTTCTCGACAACTCGCAGGCCCGCAAGAAGAAACTGCTGGAGGCCCAGGAGCACTTCAGGAAGGTGGAAGACCTATTCCTGACCTTTGCCAAGAAGGCTTCGGCCTTCAATAGCTGGTTTGAGAATGCTGAGGAGGACTTGACAGATCCGGTGCGCTGCAACTCGCTGGAGGAGATCCGGGCGCTGCGCGACGCCCACGAGGCCTTCCGCTCATCGCTGAGCTCGGCGCAGGCCGACTTCAACCAGCTGGCCGAGCTGGACCGGCAGATCAAGAGCTACCAGGTGGTGTCCAACCCCTACACCTGGTTCACCATGGAGGCCCTGGAAGAGACCTGGAGGAACCTGCAGAAGATCATCAAGgAACGAGAGCTGGAGCTGCAGAAGGAGCAGAGGCGGCAGGAGGAGAATGACAAGCTGCGGCAGGAGTTTGCGCAGCACGCCAATGCATTCCACCAGTGGCTGCAGGAGACCAGGTCCTGCATGGTAGAAGAATCCGGAACCTTGGAATCACAACTTGAGGCAACCAAGCGCAAGCACCAGGAGATCCGGGCAATGCGTAGCCAGCTGAAGAAGATTGAGGACCTGGGCGCGGCCATGGAGGAGGCTCTGATCCTGGACAACAAGTACACAGAACACAGCACGGTGGGCCTGGCCCAGCAGTGGGACCAGCTAGACCAACTGGGCATGAGGATGCAGCACAACCTGGAGCAGCAGATCCAGGCCAgGAACACCACTGGAGTGACAGAGGATGCCCTGAAGGAGTTCAGCATGATGTTCAAGCACTTTGACAAAGAGAAGTCTGGCCGTCTGAACCACCAGGAGTTCAAGTCGTGTCTGCGCTCACTGGGTTACGACCTGCCcatggtggaggagggagagccAGACCCAGAGTTTGAGTCCATCCTCGACACTGTCGACCCCAACAGGGATGGCAACGTGTCCTTGCAGGAGTACATGGCCTTCATGATCAGCCGCGAGACAGAGAACGTCAAGTCCAGCGAGGAGATTGAGAGCGCCTTCCGAGCCCTCAGCGTCGATGCCAAGCCCTACGTTACCAAGGAGGAGCTCTACCAGAATCTGTCCAAGGAACAGGCAGACTACTGCATCTCGCACATGAAGCCCTACCTAGACAGCAAGGGCCGGGAAATGCCCTCGGCCTTCGACTTTGTCGAATTCACCCGCTCACTTTTTGTCAACTGATCCCTTGCCTGCCAGTGACCAATCGGGATGCGTTTGTCACGCACACATGCTGAAACTGCATGAGTCTGACACTAGAATACTCCATAGTTATCAGTACCTATATATATCTCACTCTTTGTGCTTCACTGTCAATAGCCTAGTGTTTGCATTTGAATGTTTTAGCTGTTTTAGTGCTTTCGCTGGATTTAAGAACCTATAGATATGGTATGCTGTAACATCACAATAAGGACTGCGGTGTGCTTTAATAAACGCTACTGGTTAGAAGTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421029 lncRNA upstream 20838 14369995 ~ 14370231 (+) True G370458
TU421028 lncRNA upstream 21331 14369502 ~ 14369738 (+) True G370457
TU420974 lncRNA upstream 21584 14369009 ~ 14369485 (+) True G370403
TU421026 lncRNA upstream 39927 14350840 ~ 14351142 (+) True G370455
TU420999 lncRNA upstream 45519 14344984 ~ 14345550 (+) True G370428
TU420978 lncRNA downstream 1379 14430847 ~ 14431069 (+) True G370407
TU421047 lncRNA downstream 2559 14432027 ~ 14432389 (+) True G370476
TU420977 lncRNA downstream 3181 14432649 ~ 14432907 (+) True G370406
TU420984 lncRNA downstream 3964 14433432 ~ 14433707 (+) True G370413
TU420973 lncRNA downstream 4781 14434249 ~ 14437006 (+) True G370402
XM_021601789.2 mRNA upstream 23529 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA upstream 23529 14351453 ~ 14367540 (+) True LOC110523259
XM_021601787.2 mRNA upstream 43657 14345633 ~ 14347412 (+) True LOC110523258
XM_021601785.2 mRNA upstream 82350 14272305 ~ 14308719 (+) True mmp11b
XM_036976846.1 mRNA upstream 161761 14175440 ~ 14229308 (+) False LOC110523253
XM_021601806.2 mRNA downstream 8648 14438116 ~ 14447360 (+) True uap1l1
XM_021601816.2 mRNA downstream 116101 14545569 ~ 14547879 (+) True LOC110523268
XM_036976865.1 mRNA downstream 118475 14547943 ~ 14628975 (+) False fam102ab
XR_005051650.1 mRNA downstream 121610 14551078 ~ 14630069 (+) False fam102ab
XM_021601817.2 mRNA downstream 213305 14642773 ~ 14672009 (+) False LOC110523269
TU420985 other upstream 22908 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 65174 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 131936 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 621773 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1281935 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 375193 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 618710 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 694822 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1362091 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1790138 16219606 ~ 16220933 (+) True G372281

Expression Profile