RNA id: XR_005051974.1



Basic Information


Item Value
RNA id XR_005051974.1
length 136
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC118964781
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14396810 ~ 14396945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTGGTAGTTCCTAGAAAAAGCTGAACTGTGCTGATCTATAGGTTTTTGATTGACTGGCAAATATATACTCTGTGATTTTATGCATGGGAGTTGCCACTCCAAGTATCCTTCATAGCCCAGTTGCAGAGACATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421029 lncRNA upstream 26579 14369995 ~ 14370231 (+) True G370458
TU421028 lncRNA upstream 27072 14369502 ~ 14369738 (+) True G370457
TU420974 lncRNA upstream 27325 14369009 ~ 14369485 (+) True G370403
TU421026 lncRNA upstream 45668 14350840 ~ 14351142 (+) True G370455
TU420999 lncRNA upstream 51260 14344984 ~ 14345550 (+) True G370428
TU421043 lncRNA downstream 4894 14401839 ~ 14402147 (+) True G370472
TU420978 lncRNA downstream 33902 14430847 ~ 14431069 (+) True G370407
TU421047 lncRNA downstream 35082 14432027 ~ 14432389 (+) True G370476
TU420977 lncRNA downstream 35704 14432649 ~ 14432907 (+) True G370406
TU420984 lncRNA downstream 36487 14433432 ~ 14433707 (+) True G370413
XM_021601789.2 mRNA upstream 29270 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA upstream 29270 14351453 ~ 14367540 (+) True LOC110523259
XM_021601787.2 mRNA upstream 49398 14345633 ~ 14347412 (+) True LOC110523258
XM_021601785.2 mRNA upstream 88091 14272305 ~ 14308719 (+) True mmp11b
XM_036976846.1 mRNA upstream 167502 14175440 ~ 14229308 (+) False LOC110523253
XM_021601806.2 mRNA downstream 41171 14438116 ~ 14447360 (+) True uap1l1
XM_021601816.2 mRNA downstream 148624 14545569 ~ 14547879 (+) True LOC110523268
XM_036976865.1 mRNA downstream 150998 14547943 ~ 14628975 (+) False fam102ab
XR_005051650.1 mRNA downstream 154133 14551078 ~ 14630069 (+) False fam102ab
XM_021601817.2 mRNA downstream 245828 14642773 ~ 14672009 (+) False LOC110523269
TU420985 other upstream 28649 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 70915 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 137677 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 627514 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1287676 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 407716 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 651233 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 727345 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1394614 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1822661 16219606 ~ 16220933 (+) True G372281

Expression Profile