RNA id: XM_021601806.2


Basic Information

Item Value
RNA id XM_021601806.2
length 3050
RNA type mRNA
GC content 0.44
exon number 9
gene id uap1l1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14438116 ~ 14447360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATgcatccttccttctttccttggCGCGATCAAACGATTTCCACTCAAAGTAGTGTTTATATTTCTCCGGGGCTGCAGTTGGATACTGTAGTCATTGTACAGTGTTTGTAATATAGCAAGCCAACCACTGAGAGAAAACCGCATCTAAAACTAAAATGTTTCTTCATATTTTGATGAATGCGCAGTTGTGTGGTTTTGCTTTGCCCAGCCACAGGCAGCAACTCAAATTTAATCACAAGACAGCCTTTGTGTATTTTGCTCTTTCCTACTGAGCCCTGCACAAGTCACGAGTTCCTGACGAAGGGAGTAACAAACCGAAGATTGACCAAGTCAAACTAACCTTTACCACGGCTGTGTAACATGGTATAGGTGAACGTGTTTCTTCTGGATATTAGGTCGTGAAAATGCTTTCATTTGAGGAAATAAAATCTTCTTTAGAACATGCAGGACAGTCTCACGTTCTGCAATTTTGGTCTGAACTTTCTGGGGatgacaaaaacacatttctgGTTGAGTTGTCTCAGTTGGATTTAAATGAATTGCGCGAGCACTGTGAACGGGCGGCGGAGTCTGCTAAAGCTTATCATTCCGCAACAGCCGCGGACCAGCAAATTGAGCCAGTATCTTCAGAATTCATCGGGAGCATTCGGAAGAGTGATCACACCGCCTTAACTGGCTGGGAAAATGAAGGGTTTTTTCAAATTTCCCAGAACAGAGTGGCTGTGCTGCTGTTGGCTGGTGGCCAGGGGACCCGTCTTGGGGTTTCATACCCCAAAGGGATGTACAATGTGGGTCTCCCGAGCAGCAAAACTCTGTATCAAATCCAGGCAGAGCGCATCTGCAAAATACAGGAGCTGGCGAATGCAAAGCATGGATCAAAGTGCACAGTACCATGGTACATCATGACCAGTGAGTTTACCCTGGATCCTACCAAGAAGTTCTTCCAGGAGAATAAATACTTTGGTCTGGATCCCTCTGACGTGGTCATGTTCGAGCAAAGGATGATCCCTGCTGTGACCTTTGATGGAAAAGTCATCCTACAGGACAAAGGGAAGATAGCTATGGCCCCAGATGGAAATGGTGGCCTGTACCGAGCACTGGTGGATAACAAGGTACTTGAGAacatggaggagaggggtgtggaGTACCTCCACGTCTACTGTGTAGACAACATCCTGGTCAAAATGGCCGACCCTATCTTCATTGGTTTCTGTGTGAGTAAAGGAGCAGACTGCGGTGCCAAGGTAGTTGAGAAGGCGTACCCAGCGGAGCCGGTAGGCGTGGTATGCAAGGTGAAGGGGGTGTACCAGGTGGTGGAGTACAGCGAGCTCCGCCCAGAGACGGCCGAGCAGCGAGACCCAGGAGGAGAGCTGGTGTACAGCGCAGGAAACATCTGCAACCACTTCTTCACTCGGCCCTTCCTCAACGAAGTGGCACAGAAGTTTCAGGGGAAGCTGAAGCAGCACGTGGCGCTTAAGAAAGTCCCTTTTGTGGACAGGGAAGGAAACCTGGTGAAACCCACCAAGCCCAATGGGATCAAAATGGAGAAGTTTGTTTTTGATGTCTTTCAGTTTTCAAGGAAATTTGTGGCATTTGAGGTTCTGAGAGAGGAAGAATTCTCGCCATTGAAAAATGCTGATGGGGCACCTCTGGACACTCCTACCACAGCCAGACAATCCTTACTGGCACAGCACTACCGCTGGGCGATGGCTGCGGGAGCCAGCTTCCTGGATGCCCAAGGGAAATCCCTACCTCCTAGACCCAGGGTGACACGGGATGAATACCTACCAGCTGTCTGTGAGATCTCCCCGCTGGTGTCTTTCTTCGGAGAGGGTTTGGAGCAGCTGCTGGGACAGAAGGTCCTGACGACCCCCTTCCTTCTGGACGAGAACAGGGCAAAAGAACTCCTCCAGGCCCAGTAGCTAGCTCTACAGTACACTGTTCCCATCAGATGGGCTTACCTCTTGAGCAGTTGGGCCTGTTGATATGAGATGCTCATTCCTTGGCTTGATTTCAAAATGGAGCCTTTTGTTGCCCCTAATGGCATGTTTTTCATaaacagggttgggtaggttactttctaagtgtaatctgttactagttacctgtccaaaattgtaatcagtaacaacttttggattacccaaaatcattactgtaatctgattactttgatacgtttagattactttccccttaagacaCATTAGAAGAAGACACAAAGGCTACAACAAATGCATTTGGTGTGCCGTTAtggtggtcagactcgctcaggtggaacaaactttaACCTGCGCCTTTTTCAATGCTTAATTGAATGTAATTGAGAAACCGGAAGGTGTCGATGTATCCTAATgtatcctttctgaatttaaaagtaatcaaaTAAGTAATcctctagtttttcaaaagtatctgtaatctgataacaatattttagctggtaatGTAACTGATTACAGTTGGGGTTTTTTGGTTATCAGATTAACTGATTACATGTAGAAGTAATCAGTTACTCCATAACCATGCTCATAACTATCTGGTCCTTTCAGATTTTCATGAAGTGTTGAAGAAAGGGGACTAAGGGTCTGTTTGGAATTCAGCACCAGAGCACAAAGATGCATTGGCAATTACAAGGGAATTTTTGTATCCACAttttttttcatccaaacatgcTCATTACAATGTTGTCCCATACTCTTCCATGATCTATTGCTTAAAAGGAAACAAATTATTCTAGCACTTTAACACATTGTGTTTATCTTCTGATTATACACATTTCAGTTAATTTTTATGGACATAATTTAAACGGGATACACATTTCAGTATGCATTTGGAAAAGTAAAATCTAAAAGTTATTGATAAAGCAAAACTCAAGTACTGTAATCATGATACCAAGGAACTAATATAAAACATTGGATTATATTTTTACTTTATGATACACTTTGAGGAAATTAATTTACTTTTTTTACCCTTTTTGTATAATGTGTCGAATGTTAATGATCAAAGCAACTGTGGAAATTATAAAGCTTTTCTATAGCCCAGCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00972 UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420973 lncRNA upstream 1110 14434249 ~ 14437006 (+) True G370402
TU420984 lncRNA upstream 4409 14433432 ~ 14433707 (+) True G370413
TU420977 lncRNA upstream 5209 14432649 ~ 14432907 (+) True G370406
TU421047 lncRNA upstream 5727 14432027 ~ 14432389 (+) True G370476
TU420978 lncRNA upstream 7047 14430847 ~ 14431069 (+) True G370407
TU421088 lncRNA downstream 78923 14526283 ~ 14526559 (+) True G370516
TU421092 lncRNA downstream 81904 14529264 ~ 14529588 (+) True G370520
TU421094 lncRNA downstream 83213 14530573 ~ 14530923 (+) True G370522
TU421096 lncRNA downstream 85605 14532965 ~ 14534995 (+) True G370524
TU421108 lncRNA downstream 177412 14624772 ~ 14628755 (+) True fam102ab
XM_021601793.2 mRNA upstream 8648 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA upstream 8648 14382468 ~ 14429468 (+) False LOC110523261
XM_036976853.1 mRNA upstream 8648 14391069 ~ 14429468 (+) False LOC110523261
XM_036976854.1 mRNA upstream 8648 14391069 ~ 14429468 (+) False LOC110523261
XM_036976855.1 mRNA upstream 8648 14391069 ~ 14429468 (+) False LOC110523261
XM_021601816.2 mRNA downstream 98209 14545569 ~ 14547879 (+) True LOC110523268
XM_036976865.1 mRNA downstream 100583 14547943 ~ 14628975 (+) False fam102ab
XR_005051650.1 mRNA downstream 103718 14551078 ~ 14630069 (+) False fam102ab
XM_021601817.2 mRNA downstream 195413 14642773 ~ 14672009 (+) False LOC110523269
XM_021601818.2 mRNA downstream 195413 14642773 ~ 14672009 (+) False LOC110523269
TU420985 other upstream 69955 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 112221 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 178983 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 668820 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1328982 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 357301 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 600818 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 676930 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1344199 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1772246 16219606 ~ 16220933 (+) True G372281

Expression Profile