RNA id: XM_021601809.2


Basic Information

Item Value
RNA id XM_021601809.2
length 4317
RNA type mRNA
GC content 0.51
exon number 22
gene id pkn3
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14460818 ~ 14480420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCATCGGCCGTGTGTAATGCCAGGAAGTCCAGACAGTTTGCTTTTGCCACCAAATCTATTCAATGGATGAGGAACTGGTACGTGCGAACGCTTTACTGCGCCTTGGTCACTTTTTGTAACTTTTACAACTTTTAGTTGTCGGTCGTGGTGTTTTAACTGGTTATAAAGTTGTTCAATTGTGTTTCTTTCGAGCGAAACTGGACGAGACGCTGACTTGAGCTGTGGTCAGTGTATGGCTATTTTCCCAACCCTCCCAGTTTGAAATCAATAATCGCGTTTCTGACATTTTGAGTCTGACATGGCAGGTTTAACACTACAGCACCTGCCTGCGGGCCGGTTGGACGGGGACATACTGGACCCGGAGTTCCAGCAGCGGCTGGAAGACGCACGCACCCTGCTGAGGCAGGAGATCCAGCGGGAGCTGAAGATCAAGGAGGCGGCCGAGAGGCTGCGGCGGGCTGTTACTAACCGTAAGAGCGCCGCCGAAGTGGAGGGCCAGCTGAGGGCGTCGAGCCGCAAGCTGGAGCAACTGCACTGGGAGCTGCAGGAGCTCAACACCCGTGCCATCACCCCCAAGCCCCAGAAGGACAGCCCCACAGATGGCAGCACGTCGCCTGACCCATGTCGCTGGGAGGAGGTGACATCCCCGCTTGCCGGGCGCATCTGTGCCCTGAAGAAACAGCTCACCATGGAGACCAAGGTGAAGCAGGGGGCCGAGAACATCATCCAGACTTACGTCAGCAGCTCCGTCAAGGACCGTAAGATGCTGTCCATGGCCCAGCAGATGCTTCAGGACAGCCGCACCAAGATTGAGCTGCTCCGCATGCAGATTGTCAAAGTCACCCAAGctagagagggggagcgggaagCCACAGAGACAGACggCCGTCCCTCTGAGACTATCAGTCCTCTAGAGCTGCGGGTGGCTGAGCTACGGCATCACCTGAAGATCGAGGCTGCCGTGGCAGAGGGGGCCAAGAATGTGGTCAAGCACCTGGGCGGGCGCAAGGTGCAGGACCGCCGCGCACTGGCAGAGGCCCAGACAAGGTTGCAGGAGTCGAGCCAGAAGCTGGACCTGCTGCGTCTGTCTCTGGAGCGCCGTCTAGCCGAGCTGCCCGGGGACCACCCCAAACTGTCTGTTATCAAGGAGGAGCTCACACTGGGTGCCTCCTCGCCCTCCCTGGGTCTGCAGCTGGAGCGCCTCAACTCCACCTCTTCCTGTTCGTCGTCCTCCTTCTTCAAACCTGCCACTCTCACAGGTCGGTTGGAGGTGCGtctgatgggttgccaggacctgCAGGAGTCCGTGCCAGGTCGGTGCCGCATGGCCTGCATCACCTCCACCCCCGGCAGCCCCTCCGAAGCCAAGTCCCTGAAGATGAGGGCCGGTCTCTCCGGACGCAGCACCAATGGCAAAATCACCAAGACCGATGAGCTCTCCACGGAGATCATTGCGGTGCTGAAGGTGGACAACAGGTTGGTGGGCCGGACACACTGGAGAGCCCTGAGCAAGGACGCCTGGGACCAGAGCTTCAGCATCGAGCTGGAGCGGTCCAGGGAGCTGGAGATTGGGGTGTACTGGCGGGACTGGAGGGCTCTGTGTGGGGTCAAGTTCCTACGTCTAGAGGACTTCCTGGACAACCAGCGCCACGGCATGTGTCTTTACCTGGAACCCCAGGGCATGCTGTTCGCTGAGGTGACATTCATCAACCCTGTCATTGAGTGGCATCCTAAACTTCAGAGACAGAAGCGCATATTCCCTAAAGAAAAAGGGAAGAATTTCCTGCGGGCGGCCCAGATGAACATGAACTTTGCCACGTGGGGGCGTCTGATGATGAGCGTCCTGCCCCCCTGCAATGGTTCCTTGCAGGCCATGAGCCCCCCACTGGTGGGCTCTGACATGGCCATCACCTCGCCCCCCTCCATGGAGAAGATGGCCAAGTCCACCCCCCCTCTAAGAGATTCTGCTGTGGTGAAATTGGACTTCAGTGAGGAACGCCCCAACAATTCCCTGCAGAACAATGTGGGGAAAACTCTCGCATCAGAATCCATGTGGCAAACCACTCTCTCTCAGTCCTCTAAAGGTCATTCAACGGAGGATAACAGGACAACGCCCAAGCCAAAGACTGTATCTCAGCCTACTCCTaaGAGGGAAGTGAATGGTGGGATGCAAATGGAAGATTTCAACTGCGTCTCAGTTCTGGGGCGAGGACACTTTGGAAAGGTCTTGCTGGCAGAGTTCAAGAGGTCAGGCAAACTGTATGCCATCAAAGCCTTGAAGAAAGGGGACGTCGTGATGCGTGATGAAGTGGACAGTCTAATGTGTGAGAAGAGGATTTTTGAGACGATCAACTCCTCCCACCATCCCTTCCTGGTGAATCTGCACGGCTGTTTCCAGACGGCGGACCACGTGTGCTTTGTGATGGATTACTCCCCCGGGGGAGACCTCATGACCCACATACACACCAGCATCTTCACTGAGAGACAGGCTCAGTTCTATGCCTCCTGCGTGCTGCTGGGACTAGAGTTTCTGCACCAGAACAAGATAGTTTACCGggaTCTGAAGCTAGACAACCTGTTGATGGACGCAGATGGTTATGTGAGGATAGCAGACTTTGGATTGTGCAAGGAAGgtatgGGTCATGGAGACCGCACCTCCACGTTCTGCGGCACGCCAGAGTTCCTAGCCCCTGAGGTGCTGACAGACAACAACTATACCCGCTGTGTGGACTGGTGGGGCCTGGGTGTCCTCATCTACGAGATGCTGGTGGGAGAGTCTCCCTTCCCTGGTGACGATGAGGAGGAGGTGTTTGACAGCATAGTGAATGATGAGGTGCGCTACCCCAGGTTCCTCTCTCCAGAGTCTGTCTCCATCACCCAGAAGCTTCTACAAAAGAACCCTGAGAGAAGGCTGGGATCAGGAGAGCCGGATGCCAACGAGGTCAAGAAACACAGGTTCTTCCAGGGTGTGGACTGGGCGGCCTTGCTTCACAAAAAAGTGGTTCCTCCGTTCTTCCCGCGCATCAGGACGCCGGGGGACGTCAGTAACTTTGACGAGGAGTTCACAAAGCTCAAGCCAGTCCTCACCCCCCCACAGACACCCTACTTTCTCACTGCAGACCAACAGGAGATCTTTGCCGATTTTTGACTTttcctctctgcactgacctttTTTAAACATACACTGACGGATGGACAGACCGGACTGAAAGCCAAAACGGTTGCTGCTCCACTGAAGATGTTTCCTTTACTTCATTGTGTCAAACGGCTACCTGTGGCTGAATGAGTACTGACGACACAGGCTATCGTGATGTCCTCTTGGGTAGCCATCTTATCTTCAGGTCCATTACTGTTCATATGCTCCGTGGGTGATGAGAACTCCACCTGTACCTCTACAGCCAATCAGAACTGGGAACTCAGCCTGCCTTGTTCAAATCTGGATTGGTATGTCGGTGTCTCTGTGTTGGTGTTCAACATTGACTTTTATTACAACTGTACTGGTCTTTTTTCTTTTTCCTGTGAGGTTCCCACTCCATATTGATAGTATATCAACTAGGTTCGACATTGATATTGCCAAATCAATACTTGACATGCCACTGTTTTGGTGCTATGTCAACAATAATCAATAGGTATTAATTTGTGAAACTGAACAAGAGTACTTTGTTTCAAACATTGCACCAATGCAATAATGAGTTTTTTAATTGGTTCTAATTAGAAGGTTATGCATGACCTGCACCTCCTAACACTACACTCCATTCGTAAGAGTCTTTGCTGTAAATGAAGatagaaaaatatatttattgtaAACCCACTGCTGTTTTGGATCTTACACTGATTGTAGCGACTGATGTTTGTATGTTTAGCCTGGGAATCCAAACTGAATCGCCATTCGTTCCTAGGCTAGTGTATGTTATGTTAATGGAGGAAATGGTCCCTGAAGCTGTTTAAAAAGTGTATTGTGCTACTTTGAAATCAACCTATTCCATGGGTCCATCTTGGGCTGGTTTAGGCCATTGAATGTCATGTTGAAACTGACATCATCCTGAAGTATCTTTCTAAAAAAAATAGTAATTGTAAGTAAACTTTTTGGAAGGATTATAGTTTAAGTATTCCTAGGGAGTCATTTTCATTCCATTCCAGTAATGAGTATATTGCCATTTATATATTGTATTTCATATGAATATACATGCTTTATTACTAAAATATATATGCTGTGAATTACAATGAAAAAGATGCTGTGTCTAGAGATGAAACAAGTATGTTTTTCTTTACAATGCATGAAGGAAATGTAAATTAATAAATATATCTACTGGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02677 PRKCA; classical protein kinase C alpha type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421207 lncRNA downstream 40563 14413810 ~ 14420255 (-) True G370629
TU421210 lncRNA downstream 50771 14409094 ~ 14410047 (-) True G370631
TU421238 lncRNA downstream 90546 14370067 ~ 14370272 (-) True G370659
TU421237 lncRNA downstream 91978 14368625 ~ 14368840 (-) True G370658
TU421235 lncRNA downstream 94974 14363537 ~ 14365844 (-) True G370656
TU421291 lncRNA upstream 45724 14526144 ~ 14526438 (-) True G370710
TU421294 lncRNA upstream 48684 14529104 ~ 14529556 (-) True G370713
TU421312 lncRNA upstream 66464 14546884 ~ 14547869 (-) True G370729
TU421349 lncRNA upstream 106597 14587017 ~ 14588624 (-) True G370762
TU421346 lncRNA upstream 148681 14629101 ~ 14630064 (-) False G370761
XM_036976864.1 mRNA downstream 22323 14434246 ~ 14438495 (-) True LOC110523265
XM_021601807.2 mRNA downstream 22740 14434246 ~ 14438078 (-) False LOC110523265
XM_036976863.1 mRNA downstream 22768 14434246 ~ 14438050 (-) False LOC110523265
XM_036976862.1 mRNA downstream 22769 14434246 ~ 14438049 (-) False LOC110523265
XM_021601804.2 mRNA downstream 27052 14429469 ~ 14433766 (-) True dync2i2
XM_021601815.2 mRNA upstream 7330 14487750 ~ 14511213 (-) False slc25a25b
XM_021601814.2 mRNA upstream 7330 14487750 ~ 14511215 (-) False slc25a25b
XM_021601812.2 mRNA upstream 7330 14487750 ~ 14535120 (-) False slc25a25b
XM_021601810.2 mRNA upstream 7330 14487750 ~ 14535122 (-) True slc25a25b
XM_021601842.2 mRNA upstream 285756 14766176 ~ 14769160 (-) True LOC110523275
TU421214 other downstream 32227 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 252113 14207190 ~ 14208705 (-) True G370333
TU419308 other downstream 1754726 12705566 ~ 12706092 (-) False G368921
TU419309 other downstream 1754726 12705566 ~ 12706092 (-) True G368921
TU418958 other downstream 2324028 12134052 ~ 12136790 (-) True G368612
TU421926 other upstream 512708 14993128 ~ 14995159 (-) True LOC110524957
TU421988 other upstream 643055 15123475 ~ 15124789 (-) True G371294
TU422760 other upstream 1215672 15696092 ~ 15698329 (-) True LOC110523302
TU422972 other upstream 1495186 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 1498082 15978502 ~ 15981215 (-) True G372123

Expression Profile