Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030848 |
| length | 777 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 8 |
| gene id | XLOC_015411 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 23039041 ~ 23078748 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0018105 | peptidyl-serine phosphorylation | biological_process |
| GO:0006897 | endocytosis | biological_process |
| GO:0090263 | positive regulation of canonical Wnt signaling pathway | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6445 | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including Wnt signaling pathway; peptidyl-serine phosphorylation; and positive regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Is expressed in nervous system; otic vesicle; pectoral fin; presumptive neural retina; and solid lens vesicle. Orthologous to human CSNK1G2 (casein kinase 1 gamma 2). |
| ensembl_id | ENSDART00000153745 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033523 | lncRNA | upstream | 35107 | 23025321 ~ 23026978 (+) | True | XLOC_015410 |
| TCONS_00033522 | lncRNA | upstream | 47469 | 23006792 ~ 23014616 (+) | False | XLOC_015409 |
| TCONS_00030845 | lncRNA | upstream | 47469 | 23011833 ~ 23014616 (+) | True | XLOC_015409 |
| TCONS_00030842 | lncRNA | upstream | 48041 | 23006792 ~ 23014044 (+) | False | XLOC_015409 |
| TCONS_00033521 | lncRNA | upstream | 70056 | 22985130 ~ 22992029 (+) | False | XLOC_015408 |
| TCONS_00033524 | lncRNA | downstream | 78529 | 23156012 ~ 23184804 (+) | False | XLOC_015414 |
| TCONS_00033525 | lncRNA | downstream | 78531 | 23156014 ~ 23184804 (+) | False | XLOC_015414 |
| TCONS_00030853 | lncRNA | downstream | 78564 | 23156047 ~ 23184804 (+) | True | XLOC_015414 |
| TCONS_00033526 | lncRNA | downstream | 328970 | 23406453 ~ 23410848 (+) | False | XLOC_015418 |
| TCONS_00033528 | lncRNA | downstream | 328970 | 23406453 ~ 23442528 (+) | False | XLOC_015418 |
| TCONS_00030843 | mRNA | upstream | 37133 | 23006792 ~ 23024952 (+) | False | XLOC_015409 |
| TCONS_00030844 | mRNA | upstream | 38965 | 23007675 ~ 23023120 (+) | False | XLOC_015409 |
| TCONS_00030840 | mRNA | upstream | 200907 | 22851832 ~ 22861178 (+) | True | XLOC_015406 |
| TCONS_00030839 | mRNA | upstream | 215532 | 22823952 ~ 22846553 (+) | True | XLOC_015405 |
| TCONS_00030838 | mRNA | upstream | 235932 | 22808946 ~ 22826153 (+) | False | XLOC_015405 |
| TCONS_00030849 | mRNA | downstream | 3764 | 23081247 ~ 23099643 (+) | False | XLOC_015412 |
| TCONS_00030850 | mRNA | downstream | 3765 | 23081248 ~ 23099644 (+) | False | XLOC_015412 |
| TCONS_00030851 | mRNA | downstream | 3919 | 23081402 ~ 23103149 (+) | True | XLOC_015412 |
| TCONS_00030852 | mRNA | downstream | 52906 | 23130389 ~ 23132134 (+) | True | XLOC_015413 |
| TCONS_00030854 | mRNA | downstream | 145456 | 23222939 ~ 23293501 (+) | False | XLOC_015415 |
| TCONS_00030841 | other | upstream | 70564 | 22986282 ~ 22991521 (+) | True | XLOC_015408 |
| TCONS_00030832 | other | upstream | 395385 | 22660071 ~ 22666700 (+) | True | XLOC_015401 |
| TCONS_00030805 | other | upstream | 1686491 | 21375467 ~ 21375594 (+) | True | XLOC_015384 |
| TCONS_00030797 | other | upstream | 1819067 | 21186377 ~ 21243018 (+) | False | XLOC_015381 |
| TCONS_00030793 | other | upstream | 1884420 | 21175950 ~ 21177665 (+) | False | XLOC_015380 |
| TCONS_00030855 | other | downstream | 180294 | 23257777 ~ 23257897 (+) | True | XLOC_015416 |
| TCONS_00030856 | other | downstream | 196849 | 23274332 ~ 23274781 (+) | True | XLOC_015415 |
| TCONS_00030864 | other | downstream | 602390 | 23679873 ~ 23679989 (+) | True | XLOC_015426 |
| TCONS_00030870 | other | downstream | 935767 | 24013250 ~ 24014943 (+) | True | XLOC_015433 |
| TCONS_00030885 | other | downstream | 1271106 | 24348589 ~ 24351040 (+) | True | XLOC_015440 |
