RNA id: TU421108


Basic Information

Item Value
RNA id TU421108
length 3715
lncRNA type sense_over
GC content 0.40
exon number 3
gene id fam102ab
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14547943 ~ 14630069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCGTCAACAACCATTGAAAATAGCATCAATCAGATGTTGTTGGGTTAACCCTGTCATGTGACATGCCAGGAGGAAGAAGGACACGGTTGAGAGTCAACCCACCTGGGTGGATGATACGCGCATCGACGCCGACGACATCGTGGACAAGATTATCCAGAGCCAGAACTTTGCCGATGTCAGCGGCCATGAAGAAGACAGCAACCTCAGATTGTTTGTCAGCAAAGATGGAACTACAGCCCTAAGTGGGTTACAACTGGGGAACAAGGTGACTGCTGGCGTCTTTGAGCCAGTGGTGATCGAGAGCCACTAgcgatgagtgtgtgtgtgttcacacaaATGCACATACCCCTGTCTTTTGAGTTACACCACTTCAACAAACACCACTAAACAACATATGTAACCCTTTAATGAGATATTTACGGTGATGGTGGTGGGAGGTGTAATTTATGAATAATCCATTCATGTAGAAAACGTTTTTATATTCATGCTTTCATCTGGGGGACCATAGGTGTAAAGTGTGCAAACTACTtgatagagagagaaatgggaaacCATTGCACCGTGGGAGTTGTAGTGAAACACTGAAAATCAGGAAAAAGCTTGCCACACAGGTTGCGTTGGAGGCAAATGTGGCTGCCTCAAAAAGTTGGAATGTTATGATTTATCCTGTTTGTATCATTTTTGAACAATGTTTGTGTATGATAATGGTTGGGGATACATTTAGTTATTCAAATAACAAATATAAATTCAAATGAGGGGAGATTACGTTATCAAAGAAAGACTTGGTTACAAACTACTAAATAGAGAAATTGAACAGGCCATTTGAACTAGGCTTGAATGGGTGGTTTTCAATGTGAAATGTTCTATATTTGATGACCCCTTGCAATCCCCCGATTTCAGAAACCGTACCAGACCTGGGGTCAAAATTACGTTATAGCCCAAAGAACCCATGTTATAGAATAaaattatatatacattatagAATATATTATAAATGGCAGAATGTTTTAGAATATAGGCTTATATATAATATGATCATAGATCATGTTGAAATACGGACCTCAGAAAGAGAAACGCGTGCACATATGGCTGGCCATATGCAACTGTGCATACGGCATGGTCAATGATTCATCCATTACTCTAGTCTAGGTAAATGCAGGCAGGATTGGTAATCAATTACTGTGGTACAGGTAAATGCAGGAAGGATTGATAATTGATTACTGTAGTCTAGATAAATGCAGGCAGGATTGGTAATCGAGTACTGGAGTCTAGGTAAATGCAGGCAGGATTGGTAATCGATTACTGTAGTCTAAGCCCTtgatcctctcctcccctgggtCTTGTACATAGTCTTCTTTACATCCGTAATGTGGGACACTATCCTCAAGCTCACCAGCTGGCTTGGTGACTATACCGTAAGTGGAAAAGTTGGAAAATCAGAGGGGgacatttctttctttctttctttcctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctgtctgtctgtctgtctgtctgtctgtctgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtctgtctcagtagttTTGTCCCTTGACTGTCGCTCATTTGTCCTGTATGTCAGACccaattattttttttgtgtctgtctgtctgtctcagtagttTTGTCCCTCGACGGTCGCTCATTTGTCCTGTATGTCAGACCCAATTATTTTGTGTCACCATGCCCATGACATCCCTCCATGTTGTCAAGGGACTGTCGCTCATTTGTCCTGTATGTCAGACCCAATAATTTTGTGTCACCATGCCCATGACATCCCTCCATGTTGTCAAGGACTGGAGTTGTCAATGAATTAAGTTACTAGGTTTctgggagaaaaaaaataatcGTCTTGATCTGCAAGGAAGCCCTTTTGTATTTGTGTTCTCAACAAATCAATGCTTACAGTGAGACTCAAAAAGGAAACTCGACTGCATATTATTTCAAATATGCTTTCTCAATGCAAGCCAGGTCACTGATTTTGATTGAGTGGGGGCCCTTAAATGGTTTGGTTACCGAAGTGGGTTACTAAAGATGGCTGGCTAACTTAGTAATCCTTCTTTGTGAAATACCTTCTATGTGGGCTTGGCTAGAACTGTCCAACTGTTGCCCTTCCACTAAGCCTCAATATCACCAGTCGTTATCAAGCGTAATGAACTGACAATTGAATAAGGGCTCTAATGATAAAACTGACAGTGGTATCTGGTCATCTTCATTTAATTGAACAAGCTATTCTATTTGCAGGGGAGAAATGTAATTTTATTTCTGTCGCCCCCGGATTTGGATCCCGTTAGAAGAACATTGCATTGTGGGTATGGTGTAGTCAGAGCCAATCAGAGCTAACAATGGAGGATTTTGAGTAGAAACTCCCCTCTCATCCCCAAATGACAATGGCCtcttgtatgtgtgtttgtgcctgcgCATATCTTTTTTAGGGAGGGAGTGGAAAAGAGgaaatgtccatgtgtgtgtgtgtgtgtacttccgtgcattgtctgtgtgtgtgtctgtgcgtgtgtgtgtctgtgtgtgtgtctgtgcgtgtgcaaGTTGAAGAGCTTGCCACTCACCTGTCTCACGGTTCTTGACCCCTGAGTAACGTTTCAGTTGATCTGAAAGCCCTCAGCAGGAAAATGGACCTAATGCTCGCGCCTTAGCCTGTCTTATCGCCCTTAGCCTGTCTTATCGCCCTTAGTCTGttcatttgaaatgtattttaaagGAAAAGTGCAATATGGGCTTTCATCTACACACCTGTAGCTTCAACATAGCTTCCTAACaaggatgtttttttttacaaccgACATAAGGTGTATTTCACTCTCCACCTTCCGTCGTTGTCATTGTAGATGCtgtgtgcatactgtatgtgaaaaaaaaagaaacaatgaATGCATAAACTTTAACTTCACTGACGTGCATACACATGCATGGGGAAATGTTGACAGGTTTTCTTAGCTTTATTTGTATGTGTCAAGCTGATATGGACCATTCAACTCTATTTCATCAAGTTTGATTATACAAGCCCTCTGTAACACAGTGAATCTGTATTTTAGCGTGAGCTTCTTTTACAACCAAACCAATTGATTTCTTTCATTACACTGTTACACTGTCTATCTCGTAGTAGTGTAGTCCCAAGCATTTTATTCATGGTAATGGTTATAATGGCAAACACTTGATTCatatttgacttgttttaacttTTACCAGCTGGCTGGTTTATTTGTTCTATGCAGCAGAGATGTATTGGTAaacctgtacctgtgctctacttTGAAACATTGAAAAATCAAGTatacaaaaaaaaattatacactAAAGAGTTGTAATAATTGGTTATTTCTGATTCCCCTgctactgtttttattttttacaagagGGCTCATTGTATATTTCTTAAATTGTTTGGGTTCTGTTTTCGTACATTCTTGACTATTTGTAACCTGTGATTTTTCTAACAAACGAGTTGAACCAATATGTTAACATGAGATTCTGCTGTCATGAATGGAGCGCTAAGGATTTTCTGCTGCATATTTGAAATATGAATTAATCAACACATCACTATGGAGGGTGAGGTTTCTCTGATGCAACACATCACTATGGAGGGTGAGGTTTCTCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421096 lncRNA upstream 89777 14532965 ~ 14534995 (+) True G370524
TU421094 lncRNA upstream 93849 14530573 ~ 14530923 (+) True G370522
TU421092 lncRNA upstream 95184 14529264 ~ 14529588 (+) True G370520
TU421088 lncRNA upstream 98213 14526283 ~ 14526559 (+) True G370516
TU420973 lncRNA upstream 187766 14434249 ~ 14437006 (+) True G370402
TU421151 lncRNA downstream 12765 14641520 ~ 14641856 (+) True G370575
TU421118 lncRNA downstream 42807 14671562 ~ 14671862 (+) True LOC110523269
TU421113 lncRNA downstream 47357 14676112 ~ 14677187 (+) True G370539
TU421105 lncRNA downstream 49781 14678536 ~ 14684415 (+) True dpm2
TU421111 lncRNA downstream 66395 14695150 ~ 14695702 (+) True G370537
XM_021601816.2 mRNA upstream 76893 14545569 ~ 14547879 (+) True LOC110523268
XM_021601806.2 mRNA upstream 177412 14438116 ~ 14447360 (+) True uap1l1
XM_036976859.1 mRNA upstream 195304 14391069 ~ 14429468 (+) False LOC110523261
XM_021601817.2 mRNA downstream 14018 14642773 ~ 14672009 (+) False LOC110523269
XM_021601818.2 mRNA downstream 14018 14642773 ~ 14672009 (+) False LOC110523269
XM_036976866.1 mRNA downstream 14018 14642773 ~ 14672009 (+) False LOC110523269
XM_036976867.1 mRNA downstream 14018 14642773 ~ 14672009 (+) False LOC110523269
XM_021601823.2 mRNA downstream 49365 14678120 ~ 14684431 (+) False dpm2
TU420985 other upstream 256611 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 298877 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 365639 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 855476 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1515638 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 175906 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 419423 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 495535 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1162804 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1590851 16219606 ~ 16220933 (+) True G372281

Expression Profile