RNA id: XM_036976867.1


Basic Information

Item Value
RNA id XM_036976867.1
length 5764
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110523269
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14642773 ~ 14672009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCCTGATGTTAAATAGCAGGCGAAGATGTTCCGATTTCAGAACGATTTAGAGCACAGTTGAAAAGTTAATACGCTGACTATAATGGACTAATTAGAAAAATAAAAGCAGTAATTTTCAATGCGTGAGATAAGACGTGTGTCTCCCGGCCAATGCTTGAGAGTTGGCAGCTCGGAGAAGGCTAGGGCTACAGTAACATAACCTATACGGAGGATACTGAGGCTATGATATCTAAATGGCTTTACACTGAATTCTGATGACAGGACAACCTGAGCATAAAAGGTACGACGGCAGACAAAGTTTACAGCTATGAAGCTGTAAGGGAACCCACAACATGGCAAGCACACAGCAGTCTGCTTTTGAGTATGTCCAAAATGGCAGAGCTCTTCTTGAGGGTCACCTCCAGAAACCCTCCTTGGTCGTTGATGAGTTGCGAAAGAATAACATCTTCAGCGAAAAACAAGTTAGAGAAATTAAATCCCATAAAAAGAGGTCTGTCAAAACCAGAAAGATGCTGGACATGATTATCAAGAAAGGGGAATATGCCAGCTATGAACTGTTAAAAATATTGTACAACACAAGGAACCAAACCTTACCAAGAACAAACCCTACCCAGAATCAACCTCGCCACCCAGATTTACATCAATGGATCAGCTGCTTTTCGTTTACGGATGACCCAGATTTACAGAGTGGCCTCGTCTCTGAATCAGGGCCTTGTGAGAGGTACAAAAGGCAGCTGCGAACGAAAGCCGTTgagtttcttcatgcaaaatggGACCAGCACATGCATTTCCTCAAAGACAAGGCAAAATTCAAACCCTTTACTTACATTCCTGTCGTTTTGGACACCGACTCGAGTGAGCTGTCCAAAACTAAAAGCAAGTACAAAAAAGCACGCTCTAAGAAACTTAAGACTTACATTCCAAGAGACAAGGGAAAACTGTCCCCTGGTCACTTACTGGAAAGCAGTGAGAAAAAGATTCTACTTGTTGGTAAACCTGGCATTGGAAAGACAACTGTTGTCCAGCAAGTTTTAAATATCTGGGCAGAGAATGAGAATCCTCAAGAGAGTTATATGTTTTACTTTGATGAGCCTTCGATGACATCAATGTCTCACTCTTCACAGCCCTCATCCTTGAGGTCTCTGCTGTTTGAAAGATACCTAAAGCCAGAGGAAGGCACAGAGGATGTGGTGCTGTGTGATATTCAAAATAATTCAGAAAATGTTATCTTTGTGTTTGATGGGATCATGGATGTGATTGGCAACCCCGTGCTAAATAACATTTTGGCAAAAGAACTTCTGTGTGATGCCAAGATTCTGACCACGTGCAGACCAGAGGCAGAAGACTGCGAGTTTTTATCTGACTGGCCGTCTTACAGAGTGGAGGTCCAAGGATTCAACAATGAGTCCATCCATGCTTACTTAAAGTGGATGTTAGGCACTGAGGATGACTATGTTTGTAGTGTTACGAGCAACGACGCACTATTCAGTCTATGCCATGTCCCAATGTACGCTTTCATAGTGACTGCTTGTATTTCATTTAGTCCCTGTGAGGCTAAAAACCACCCATGCACCATAACAGAAATGTATGTGCGGATCTTTCGTCATTGCATGAAAAGACATGGTGACCAAAATGTTGAGTATCTGGATAAGTACATTCATGACAATATGGGGAACATCAAGTTTCTAGCTATAAACTCTTTCCAAGCTTTACTTGCGAAAACCGTAAACTTGACAGAAATGGATTGCAAGGACAACAGTGTTCAACATGCGTTCTTGTCATCCAGTGCAGCAAAGGAATCGTCAACTGGCCATTCGTTTGCTTTTCTCCACAACACGATGCAGGAGTTTTGGGCTGCTCTTTTTCTGTTGATGACACCTGGAAACATCACCTCCGTCCTTCAACAGTGTCAGACAGAAGAAGGAAAGTACTTGAAGTACATTGTGTCCTTCCTCTGTGGACTATTGTCCAGTGACATTGCTGAATTGATTAACTGTGTAGTGCCAGAGGACCAGATAAGGGAAATATCTGACATATACCTTGAGAAAGTCATAGACACCTTCCTCGGGCCTGCAATACTACACGGACATGATGAGTCCCATACCGAGTTGGATGCTGATCTCCTCTTCGTTTGCCAGTGCTTGTATGAGCACCAGTCACCCGAAGCCTGTTCACTCCTTCTACAAAAAGTGGAGTATGAGCTTGATCTCAGTGGACAATATCTCGATCCTCAACAGTGCTGTGCTGTGTCATATGTGATCAACCAGTCCACAAACAAGAATGTCTGTCTGTACCTGATTGACTGCACTTTCTCTGATCCAGGATTAAGGCTGATTCTGGGCTCTTTGAAAAATCTTCAATGTCTCAGATTGGATCCCACTACACAATGTCAGGTGTGGAAAGCTGCTCTTCACTCAGGGAACCCGAGTGACTCTGAAGGCTTGCTAAGACTGTGTGAATATGAAATTCACTTAAGAGTCATGGAGAAACAGGACCAAAAGGtgtgggagagagtgggagaggtcCTGAAGCACAAGAGACCAGAGAAGGTCAAACTCTGTCTACATTTGGTTGACAACTCACTGCATGCAGCTAATTCCTTGGGAAAGAGCATATTTGACCATTTGCCAAACGTTGAGGCTATCAGACTGAGTAAGGAGACTCGGCAGCAGCTGGCTGTTGTGGTGTATGAGGCTCAGGATGAGGAACTGACCCAATGCTTTCTGGAAAAGTCGGGTAGTGATCTGTCTAACTGTACACTGGACTGGGATGTGCTTCACTACCTGCTGAAGACCACCACACAACCCATCACCATCAACCTCAGGAGGAGCAGAATCAGAGACCAATACATACCGTATCTCCTCCCTTTGCTGAAGAATGTTCACTTTCAAAGGACAAGCTCCCAGTTTGAGAGGACAGCTCTGAGAGAAATACATGAGCAACGTGCTGGTCACTTGGTGAACAGTTTAGTGAAGTCATCAGATGACTGGATCGACCTGAACAACCTGGTTTTGAACCATGATGACTGTGAAGCGCTTCGTTTTGCCCTGCACTACAGTGACGGTGTCAAACTCAACTTGTTGTTGACCATCATTCCAAAGGAGGAAATGGAGAGCATTCTGACTCTTCTACACAGAGTCTCTGAGCTCAGGGTCGAAAGGAAACTATTGCTGGAGCTGCTCCATACCTGTGCAGTagtgagaaggaggagaggagtggcacCTGCACTCCTGACACTGCTGCATCACAAACTGGACCTCTCCTGCTCCTCTGCCATGGACCTGTTTGGGCAGGAGAAGACTGTTTTGAGCCTCAGTTTTGGAGACTGTAGGGTAATCTCCGCGGCCATCCAGGAAGCTGATGGTGACACAGAGCTGATCCTACACGACTGCCATGTTGAGGATGAAGGAATAGAGGAGCTGTTTCATGTTTTGCACAGGATTCATATGAGCTTTGGAAAACCTCTTCTGCTGCAACTCCTGCACTTGATATTTGTGGAAGATTGCGACAGGTCAGTGAGGCTTGCTTCATTACTCTCCAGAGCCCTAGAAAAGAAGGTGGACCTCAGTCATAGCCCTTTAGACTCGAGGGCCTGTTCAACACTTGCCTTGGTTCTAGAACACTCGGAAGGGCTTTCCGAGCTGAACCTCAGTGACTGCCACCTCACTGACACACAACTGGACGTGCTGCTCCCACATCTGCACAAAGTTCAAGTCCTGAATCTTTGCAATAATGAAATCACCGACAAAGGTGCTGTGAAACTTAACCTATACATGATCGGCAATAGCTTCACAGAAACTGTATGGCTCTCCAGCAACATGATTACTGAGTTTGACATCTTATTGGCGGACAACCGCTACAAACTGTGGCCAGCTCATGTGGAGCCTGGGTGGCACGATCAGCGCGTTACTTCCCTGGGATCTACCGCTGTGACAAATGAGACCTCTAAAAAAAAACCCCTCATTGAAGAATTTGATCCTGACAAAACAATAACAGACAAGATTACCTACAGGTTCCAGTGTGGGTCTCGTGGCAGGTTTCAGTGCAGAGCTACAGGGCTGGTTTTTGGGATGAGGGGGGCAGGAATTGTGGAGTACAGTGTGGTCCACTGGGACAGGGATATCCTTGCTAACACCAGCTATGAGCCTGCAGGCCCCCTGTTTCAACTCAGGAGTCCAGAGGGACATATGTACCAACTACATCTACCTCACTGCGAGGTTACGGTATCTGCAGCTGAGAACCTTCTTGTGGCCCACATATGCAGAAAGAACAGGGAGTTCTTAATACCCAAGGTGACACACTCACACGTGATTGTAAGCATTAGTGGGCTTTCAAATTATGGAAAAGCTCGTAAAAAACAATCCAACAGCAACCGTATCCAAGGACAGGTGCTACTGTTCCTTGAGCCTGAAGCAACTCCAGAAGAGCAACGGCTCTGGGTGTTCCTGCTGCCCCGAGACATGCCGCCAGACCAGGTGGAAAATCAGCACAAAGAGTTCACATTCATTAAGACCAGCTCATCCTGTATGCTGACACCCACAGCCAAATATAGTGTGACTTCTGACCTCAAACAAGGCTTTCTTGTTCAACCCAAAAAATACACTTTGCACATTGCACATTGCACATACCAACACGCCACCTTTGAGGTCTTCTTGAACCGTAGTATCACAGAACTCAAAATGAAAATTCTGGAGACGAAGCTAAAGACGAGGAAACGCTGGTGTCGCCGAGTGATTCTCAACACACAACGGGATAATGCTGCTAAGATGAAAAGATTCAATGAGCAGCAGTGGATAAAGAACCTGGGTGACATGCTGAGAGAACTGTCAAAGGACGAAATTAAGAAGCTTAAGTCAATGATGAGGAATAAGGAACAAAAGCCAATCCCCAAGAGTGCTCTGGAGGGACGAAAAAGCCCTGAGGAGCTTGCAGAGCTGATGGTGGAGACCTGGGGGATGCATGACTCCATCAAGGCCACCAAAGAGTTCATGGAGAGACTGCCACGCAATGACGATCGAGTGACCTCCTTGCTGCAGCCATTCTTGTAGCATTTTGGCAAAGGGTGGGAGATGATGGAAGTGTGGTGGCTACCTGCAAAAAACTATGGGAGTATGCTTTTACAAGGTCCAAAACTCAGGGAAAATCAAATCCATTGAAATTGATATAATGAACAGAGCATTTAGAGAACAAATATATTGTATTGCAGTTGTCTTTAATTTTGTAAACTTtttgggaaaacatttcagttgaACAATATTTTGAGATTTTATGTATATTTCTatattttaaaactttttttaaatcactgaaaTATGTACAGTATGACCAATTACTTTTTCTACCTGTTTGAATCTTGGCGTTGTCTCATCCACACATTCGGATAAAACCATGAATCTAATCCGTGGCCAATTATTGTTCTACCCTTTCACTGTCATAACGGTACAAATCTTTGCCGCAAATCCTAAAACTAGTATGTATGATTATTGCTATCCTCATTTCATCAGGAAAGACAAAAATGCCAAAACCCTCATCATTAGTGTACTTGCTGTTATTCCCTCTTAATAGTCACAGTTTGCATCACATAGTAACCAATTCTTGATATTAACCAATTGCCTACACTGTTGTgcttgttttttaatttttttattaaatGTGCTTTTCTATGCAATAAAGATTAGGGTACACACTGAGCAATAACCTACAATATTGGTAGGCCTAAACCTAATATTTTGTTGattaaatacattatttagaTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421151 lncRNA upstream 917 14641520 ~ 14641856 (+) True G370575
TU421108 lncRNA upstream 14018 14624772 ~ 14628755 (+) True fam102ab
TU421096 lncRNA upstream 107778 14532965 ~ 14534995 (+) True G370524
TU421094 lncRNA upstream 111850 14530573 ~ 14530923 (+) True G370522
TU421092 lncRNA upstream 113185 14529264 ~ 14529588 (+) True G370520
TU421113 lncRNA downstream 4103 14676112 ~ 14677187 (+) True G370539
TU421105 lncRNA downstream 6527 14678536 ~ 14684415 (+) True dpm2
TU421111 lncRNA downstream 23141 14695150 ~ 14695702 (+) True G370537
TU421483 lncRNA downstream 64002 14736011 ~ 14749996 (+) True G370867
TU421499 lncRNA downstream 91542 14763551 ~ 14763750 (+) True G370882
XR_005051650.1 mRNA upstream 12704 14551078 ~ 14630069 (+) False fam102ab
XM_036976865.1 mRNA upstream 13798 14547943 ~ 14628975 (+) False fam102ab
XM_021601816.2 mRNA upstream 94894 14545569 ~ 14547879 (+) True LOC110523268
XM_021601806.2 mRNA upstream 195413 14438116 ~ 14447360 (+) True uap1l1
XR_005051974.1 mRNA upstream 245828 14396810 ~ 14396945 (+) True LOC118964781
XM_021601823.2 mRNA downstream 6111 14678120 ~ 14684431 (+) False dpm2
XM_021601825.2 mRNA downstream 6146 14678155 ~ 14684431 (+) False dpm2
XM_021601821.2 mRNA downstream 12585 14684594 ~ 14693573 (+) True pip5kl1
XM_021601826.2 mRNA downstream 34786 14706795 ~ 14759767 (+) False sh3glb2b
XM_021601827.2 mRNA downstream 34786 14706795 ~ 14759767 (+) False sh3glb2b
TU420985 other upstream 274612 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 316878 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 383640 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 873477 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1533639 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 132652 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 376169 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 452281 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1119550 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1547597 16219606 ~ 16220933 (+) True G372281

Expression Profile