RNA id: TU421105


Basic Information

Item Value
RNA id TU421105
length 1858
lncRNA type sense_over
GC content 0.41
exon number 4
gene id dpm2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14678120 ~ 14684431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGATTCAAACGCGGAAACAACACGTTAGAAATGGCAACAGGGACAGATCGAGCAGTTGGCATGGGCCTGGTTGGCTTCAGCCTCCTATTATTTACATACTACACAATCTGGGTCATCATACTGCCCTTCGTGGACAGCGATCATGTGGTCCACCAGTATTTCCTTCCACGGGAGTACTCTGTCATTCTACCTGGGATTGCAGCATTGATACTGCTGCTCTGTGTAGgtacCTTCATTGGAGTGGTCACCAGGAAGAACCGCAAGCCTAAGGTGGACTAAGAGGGATGGTGTCACAGAGACGCTGTCAGACGAGTCAGGATGTATCGCTAGTAGTTATGCTAACAGTAGCTTCACTAGAACCTCCCTGGTCCAGCGTCTTGTCTTGCCTTACATTCCGTTGGGAGAAATCAAAAATAAAGTCTGGCTTCtctctgacagctgatgaaaaCATCTAATGACTGAAAGACATAAGACAAGACTTGAAGAGCTGCTGTACACCAACACCTATCCCTTCTCCTTATTCAGACCCACAACCTTGTGGTTGGCAATGCATGTCAGAGATTGACATTAAAGCCTGAAAGGCACTTGCCCATCGGGCAAGTCAGAAGTCTTTTTTTTTGGTTGCCAAAAGATTATGATCACTTCCCTGAAAATGTAAATGAGTTATTTACACACAAACTGCCATTTATGGCCTGCCTGTCACCTACACATAGGGAAGGAATCAGACCAGTACTGGAATTCTTTGTATTTTGGTTGTTATCAGTAAAAACATTAATAGCAGGCTCAACTTGCCCGACTGCCATAAATGCCATAAATTGTTTGTCTTTTGTGTAAACAATGGGAATGAACCAGAAAGATCAGCTTTAGGCTACTGGAATTCTTTTCAGTTTGATTTCTATATGTATTCATTTTTCATTACATGCCCATTGGGGCAAACTCAGAGCAGGCCAAACTTGTGCAACTGCTCACTTCACTTGACCCAGGCAATAGGGCAACCCTTAATGTCAATCCCTGCATGGCTGCAGATGCTATATTTATCCTTAAAGAGCATTGTCACTTTGCCAGGGatacaaaattcaaaaggcactcgcacatctgagcaatcctatttgcaggtgcatggcaacaattgaacaagatgaaggaaaaaggaaaccgcacactgctcttgatagtatcactgatctttattAAGCTTACGCGTGAGGCTtttgtcagagcttttgtgaatttaaaaaaaaaaaattgaaatttgCACtcttatgtagacctagccccacccACATCTGTTCCACACATCGAAAGGGGTTGGAGGCAAAGGAAAAAAAGGGATGAAATCGATGTGTCAGTATACACTTTGTACCACTTTGTATGTGGTCAGCCCTAGATAAAAACCTGGCTTCATAATGTGGAGAGGAATTAGATTAGCTGATTTTGTGGAGTACTATATCAGATTTGATCAAAGTTTCACTGGCGTCCCATTTCACCACATTTTGGATGTCTTTTCAGGCACTGTTTTAAGACTTAAAGATGTATTTTGAGTTCTTAGTTGCTAAGAATGACCAATGTCAATTGTTTAGTTAGTAACTGTAGTCTTCACGGACTGAAAGGGCCCAATTGAAATCCAAGCATATTTATTATGTCCACACAAGCACTTGGTATTTTAAATAATCATTGTGGCAAATTAGGAAATCTGTCATGCTTTTAAATACCATTAAGTGCTTGGCTAGTTCAAGTACCAGATAACATAGCATCTGATATGATGGACGATTTTCTAAAGTCTGTTGagcaaaacaaggtctaaaaatgTGGATGGTGTATAGGGTTAAAGGTCCTCTGTATTCACAAAATAAAAT

Function

GO:

id name namespace
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421113 lncRNA upstream 1349 14676112 ~ 14677187 (+) True G370539
TU421118 lncRNA upstream 6674 14671562 ~ 14671862 (+) True LOC110523269
TU421151 lncRNA upstream 36680 14641520 ~ 14641856 (+) True G370575
TU421108 lncRNA upstream 49781 14624772 ~ 14628755 (+) True fam102ab
TU421096 lncRNA upstream 143541 14532965 ~ 14534995 (+) True G370524
TU421111 lncRNA downstream 10735 14695150 ~ 14695702 (+) True G370537
TU421483 lncRNA downstream 51596 14736011 ~ 14749996 (+) True G370867
TU421499 lncRNA downstream 79136 14763551 ~ 14763750 (+) True G370882
TU421500 lncRNA downstream 79783 14764198 ~ 14764544 (+) True G370883
TU421508 lncRNA downstream 86622 14771037 ~ 14771236 (+) True G370886
XM_021601817.2 mRNA upstream 6527 14642773 ~ 14672009 (+) False LOC110523269
XM_021601818.2 mRNA upstream 6527 14642773 ~ 14672009 (+) False LOC110523269
XM_036976866.1 mRNA upstream 6527 14642773 ~ 14672009 (+) False LOC110523269
XM_036976867.1 mRNA upstream 6527 14642773 ~ 14672009 (+) False LOC110523269
XR_005051650.1 mRNA upstream 48467 14551078 ~ 14630069 (+) False fam102ab
XM_021601821.2 mRNA downstream 179 14684594 ~ 14693573 (+) True pip5kl1
XM_021601826.2 mRNA downstream 22380 14706795 ~ 14759767 (+) False sh3glb2b
XM_021601827.2 mRNA downstream 22380 14706795 ~ 14759767 (+) False sh3glb2b
XM_021601828.2 mRNA downstream 22380 14706795 ~ 14759767 (+) False sh3glb2b
XM_021601829.2 mRNA downstream 22380 14706795 ~ 14759767 (+) False sh3glb2b
TU420985 other upstream 310375 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 352641 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 419403 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 909240 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1569402 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 120246 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 363763 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 439875 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1107144 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1535191 16219606 ~ 16220933 (+) True G372281

Expression Profile