RNA id: XM_021601829.2


Basic Information

Item Value
RNA id XM_021601829.2
length 2815
RNA type mRNA
GC content 0.47
exon number 13
gene id sh3glb2b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14706795 ~ 14759767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcgtttgtgtactacatcatcgcATCTGCGCGACAAGACTCCCTTTGCAGGGGACAGTAACAAGCCGAATAAGCGGTGCACACACTGATACGATGGATTTCAATCTCAAAAAGCTTACTTCTGATGCAGGAGTCTTCTTCACTCGTGCAGTCCAGTTCACAGAAGAGAAGTTGGGCTCTGCGGAGAAGACTGAGCTCGATACCCACTTGGAGAATCTGATCGCCCGGGCCGACTGCACCAAGAACTGGACTGAGAAGATCTTCAGGCAAACAGAGGTCTTGTTGCAGCCCAATCCAATTGACCACACTGGTGCGCGTATAGAGGAGTTTTTCTATGAGAAGTTAGATAAGAAGATCCCATCCAGGACAACCAATGGAGAGCTGCTGGGACAGTATATGCTGGATGCTGCTAAAGACTTTGGCCCAGGGACCCCATATGgcagtACCCTGATCACGGTGGGGGAGTACCAGATTAGACTGGGCGGGGCGGAGCGGGAGTTCCTCCAGACCTCGGCTATCAACTTCCTCACTCCTCTCCGCAACTTCCTGGAGGGAGACTGGAGAACCATATCTAAAGAGAGACGTCTCCTAGAGAACCGGCGTTTGGACCTGGACATCTGTAAAGCACGTGTCAAGAAAGCCAAGCAAGCCGAGGCTAAAGCGGCGTGTGAGGGAGATGCCGAGCCCGATTTTCAGGAGACTAGGCCTCGAAATTATGTTCTGTCTGCGAGCGCATCTGCGCTGTGGAGTGAGGAAGTGGACAAAGCGGAGCAGGAGCTGCGTGTGGCTCAGACAGAGTTTGACAGACAGGCCGAGGTCACCCGGCTGCTACTGGAGGGCATCAGCAGTACACACGTCAACCACCTGCGCTGCCTGCATGAGTTTGTGGAGGCCCAGGCTACATACTATGCCCAGTGTCACCAGTACATGCAGGAGCTGCAGAAAGAACTGAGCAGGTACCCAAACTCTTTTGCCTCGAACGCCAACCCCTCCACCTCTGCCACATgcccctcccctgtctcctctgccACCCTGCCAGGAGTCTCACCCCCATGCCtggcctccacctccacccctggCATCGCTCGGGAGCCTTCTGGCCAGCTGAAAATCCAGGATGTGCAGCAGCCTTCCACAGGCCACCGCAAGGCCAAGGTCCTGTATGACTACGACGCCCACGACACTAGTGAGCTCTCCTTACTGGCCGACGAGCTCATCACTGTCTACACAGTGCCAGGCATGGACCCAGACTGGCTCGTGGGAGAGCGGGGCAACCAGAAGGGCAAGGTGCCTGTCACCTACCTGGAGTTGCTGAGCTAGATGGACCCACgtagggacacacacacgtacacacacctcCTCAAacgcacgctcgcacacacacacgcacacatgcctCTACCCTATGGTCTCatggcacaggaggttggtggcaccttaactgaggaggacgggcttgtggtaatggctggagtggaataagtagaatggtatcaaacatggaaagatgccattccatttactccattccaaccatttttatgagccgtcttcccctcagcagcctctgcTGTCTCATGGTGCGCAACACACTTACTTTGGTCTCTGGCCAATTCAAACGCATATGCAAAAGGATTCAAAAGCTAAATGAGTGGATATATAGCGCATCAGAAGGGGAACAGTCGTAAAAATAGTGAATAGTCTATATTCTAGCTCTATAGTTGCTCTTTTCCCACTAGCTATTTGGAATCCATCCACCTTGCAcgctctatctttctttctcattGAGAAATGACAGGAGCCGCTCGAATAAGGTGGCATATCTgggtatatagtgtatataatagaCTCTCAATATATAGAGGAAAGGTCCTTCTTGTTTTATTTCGTTTTTCAGCCAAGCTAATTTAGTCATAGTTAGTCACCATTACTTTGACATTTCAAAGCCATAGGGAAAAAAGTAAAACCGGCTGTAAAATCCCCCAGCTGTAGGCCTGTAATGCAAACATCATCCAGAGTGACGCAAATATTTATCTCTCCAAGGTGTTATTAGCCATTGGCTATAACAACATAAAAAATGAATCTTGAAAGAAAGAGACTGCTGTACAGTTTGCTAACAGAAGGTGACTCATATTGGCTGAGTCATAAACAGGTGATGAAAGACGAGAGGAATAGTTGAATTTCAGTTCTTATGTTTTCTGACTGGTTGCATTCTGTTTATGTACGTATTCTATTGACGTGGCTTTTATTTCTTAGGTATCACTGTTTGACTTTTTTACGAGTGTTCCCCCATCTTGCCCTATTTGTGAGGAAAAAGACAAAACCATGGTAACTTTATTAAACTAACAAAGGTTAATGCAAATCAAAGTATTGAGTTGCTCTCTCAGTGGGTTGATCCGTTGTTGATGTTTGCGTGtcattgttgtttttgtttatcCACTCTGGTTGCTGATGTTTGTCGAGTTTCGGGTGTGTTTTACTAGCTATCAGGTCTTAATGTTTGTCTTTTTGAATTTGTAGATGTTTTGAAATGGGTGTAGTTGTATGTAATAAGTTCAGACCTGTGGTTTCCTTTCCTCCCTGATCTCCCTTTACCCCTGTGTGGGTCGCCATCTCTCCCTGAACCCCTCAACCATTCCTCCTGTCAGTGTTACCAATATGCTGTTGTATGATTATGGTATGAATGGAACttgaagaaaattaacaacagcTTGTTTAAACTGATAAAAAATAAGCACTGGATAATCTGACACATTAAAACAAAACAACTGTTCATTTATAACATTGTACAACTGAATAAAATGTTACAtttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421111 lncRNA upstream 11093 14695150 ~ 14695702 (+) True G370537
TU421105 lncRNA upstream 22380 14678536 ~ 14684415 (+) True dpm2
TU421113 lncRNA upstream 29608 14676112 ~ 14677187 (+) True G370539
TU421118 lncRNA upstream 34933 14671562 ~ 14671862 (+) True LOC110523269
TU421151 lncRNA upstream 64939 14641520 ~ 14641856 (+) True G370575
TU421499 lncRNA downstream 3784 14763551 ~ 14763750 (+) True G370882
TU421500 lncRNA downstream 4431 14764198 ~ 14764544 (+) True G370883
TU421508 lncRNA downstream 11270 14771037 ~ 14771236 (+) True G370886
TU421510 lncRNA downstream 13658 14773425 ~ 14773709 (+) True G370888
TU421511 lncRNA downstream 18226 14777993 ~ 14778218 (+) True G370889
XM_021601821.2 mRNA upstream 13222 14684594 ~ 14693573 (+) True pip5kl1
XM_021601823.2 mRNA upstream 22364 14678120 ~ 14684431 (+) False dpm2
XM_021601825.2 mRNA upstream 22364 14678155 ~ 14684431 (+) False dpm2
XM_036976866.1 mRNA upstream 34786 14642773 ~ 14672009 (+) False LOC110523269
XM_036976870.1 mRNA downstream 25704 14785471 ~ 14792549 (+) False LOC110523276
XM_036976536.1 mRNA downstream 39005 14798772 ~ 14805526 (+) False LOC118964542
XM_036976871.1 mRNA downstream 59542 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 59542 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 59542 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 338634 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 380900 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 447662 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 937499 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1597661 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 44894 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 288411 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 364523 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1031792 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1459839 16219606 ~ 16220933 (+) True G372281

Expression Profile