RNA id: TU421521


Basic Information

Item Value
RNA id TU421521
length 1446
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC110523276
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14785471 ~ 14793184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTCAGTCAGTGTTTGGTGCTTGGGCTGCGACAATTTTCCACTGGTTCATCTATGGTCTAATATTACTGATTGCTCTGTTGCTAATTATCATTTGTGTGAAGAAATTGTTTAATAAAGTGGTTGATGTTGTTCTTACTATGCCCTTGCTTGCAAATGAAGTAGGTGTAGATGAGGAATCTGAGATTGCTGGGCAACAATCAGGTGAACACAGTGAAATATTCTCACTGGACATTGTAGATAGAGAGGGTTCACTGTATATGAATGATTTCCCTGACCCATTCCCTATTCCTGACTATATCTCTGATAGTGGGGAACCCAATTCTAAGCATGAGGACTTAGAAGGATGACTGTCCTATAGGTTGTAATGATGCCTGTGTTTAGACACTGGTTCTCTTGTAATTTTGGGAGCAGTtatatgttttgttatttttattttttactcaacaAATGTATTATTCTGTATGATTAAACAGGTGCAAGTCTGTATTATGGTATAAACATTGTAAACTCAGTTTCTGAAGGGTGAATACTTACATTGAAGGGATTTGATTCTTTATTATCTTTCAATTTTGATTATGGATTTTTTAATTGTATTATATACTCTGCAACTACTGTTAGTAAGGTGCCATGTTACTATTCTGATTCTTCAGAAGGGACTTAGTCCCTTGAGAGGGGCATGTTGGGgattaatcagaattagttgggtaacatagataagatgttttattttcatgatatgcttatgagttatttctcataacaatgtattttgttgtactatagtggtggcaTTTGCaattatctgttctctgtcaagactaagttgcttgggccgcagagaggggagaggtcaaggtgtcatcatgtgtaaacatatcttttaaaccatgtgaagggatgattaatggggaaccaattatctcttggctccactgCGTCTGTatgccagtcactccctacttttcccatcggggagaggaggatggcagtgtctggaatcattctatgctccctctttTGTTGCCCCTATCTTGACCTAGAGCCTCACTttcctctccgtgagcttgtccagaattggttgtatttagaattggttgtatctaaattaCAATTTGATATATATCATTGGGTGGGGGTAATGTCTTGGTACCATTTTGTCCCAAGGACGAGATAAgagctttgtttaggagaccaaactgaacgataatttatagccaactctgtctggctaggggatattcctctctgaagtaaagtctttctttgtgtaagttcctaagacctgtggtttgtcatgtcgtctagggagggggtggatctttgctataaaggatcccatttgccattatgttgaccactctcaacttttcattagagatactgaactgttgaaagtcaaaatgctattgcaaaagcttaattattattaaaggtgaagattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421520 lncRNA upstream 6490 14784948 ~ 14785249 (+) True G370898
TU421519 lncRNA upstream 6860 14784654 ~ 14784879 (+) True G370897
TU421518 lncRNA upstream 7245 14784288 ~ 14784494 (+) True G370896
TU421517 lncRNA upstream 7821 14783631 ~ 14783918 (+) True G370895
TU421513 lncRNA upstream 11862 14779673 ~ 14779877 (+) True G370891
TU421527 lncRNA downstream 5432 14798616 ~ 14798817 (+) False LOC118964542
TU421538 lncRNA downstream 23575 14816759 ~ 14816984 (+) True G370913
TU421438 lncRNA downstream 108381 14901565 ~ 14916666 (+) True dolk
TU421456 lncRNA downstream 132787 14925971 ~ 14930826 (+) True G370841
TU421459 lncRNA downstream 137734 14930918 ~ 14931459 (+) True G370844
XM_021601838.2 mRNA upstream 31972 14706795 ~ 14759767 (+) False sh3glb2b
XM_036976536.1 mRNA downstream 5588 14798772 ~ 14805526 (+) False LOC118964542
XM_036976871.1 mRNA downstream 26125 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 26125 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 26125 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976874.1 mRNA downstream 26125 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 423578 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 465844 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 532606 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1022443 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1682605 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 11477 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 254994 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 331106 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 998375 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1426422 16219606 ~ 16220933 (+) True G372281

Expression Profile