RNA id: XM_036976879.1


Basic Information

Item Value
RNA id XM_036976879.1
length 9991
RNA type mRNA
GC content 0.56
exon number 50
gene id cdk5rap2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14819309 ~ 14892194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCCTCTAATAACTTTCGGAGAGTCCACGTGAAAAGCGGAAACCACGCATGTGTTTGTTTCTTCCTTGCAACTATGTAATGTTTAGGCTAGCCAATACGGATATTTTTTTCTTCCTGTATGCTTGCCATGAAGTGAGTCACCATCTAATATTGCTGTAGCATGTCCAAACTCCCAGACTCCATAGACGTCGGGGATTTCTCCATGGACAACATGACAGCCCCTACATTTCCAGATAAGATGTCCCCTGTCAAGACCGCTCTCACCCTAAAAGACTATGAGAATCAAATCATGACTCTGAAGAAGGAGAACTTCAACCTGAAGCTGCGTATTTACTTCATGGAGGAGCGCATGCAGCAGAAATGCGACGACTCCACAGAGGACATATAcaaaacgAACATTGAGCTGAAGGTGGAGGTGGAGTCTATGAAGAGAGATCTGGCAGAGAAGCATGAGCTACTGGTGTCTGCATCGAAAGCGTTGGAGAGCCTGGCAGGTAGAGAGTCTGGTGACTCCCTGCGTGTGAGAGAGCGAGCCCACAGAGAGATGGATGCACTCCGAGACACTCTCAACAAGCGCATCGCTGAGCTGGAGCAGGGTCTGAGAGCGGCCGAGAAGGAAGTCGACAAGATGGCCGCCATTGCTGAGCAGGAGAAGGTGAGAAGCATTGGTATGGAGAAGCAGCTCTTGGCCCTGGGCCCGTCGGGAACCTTCACCCCCATCCATGTTCCCAGCCACGACCTGCAGCAGGCTCTACAGGAGAAAAACAGTGTCATAGATCAACTGAGGATATCTGTGATGAACCAGGAAGCTGTGATCCAACAGCTACAAAGTACTGGCAGAGACCACGGGACGGACACACCAACCACAGAGCACACCCTACAACTCTCTGCTCTTATTGGCCAGAAAGACCAGGAACTGCAGACTCTGAGGGCTGAGCTGGGCCGCGAGAAGGGCAGGACGGAGAAGGACCATCAGGGTTTCACTGAGCAGCTGAATGAGGTGAGCAGGCTGGAGACAGCCCAGAGGCAGCTGAATGAGGAGATGAACCAGTTCAGAGCAATGAACCAGAACCTCTCCAAGACCCTGGAGGACATCCAGAATAACAACAAGgtaCTGTCTGGTAAGTTGGAGGAGACTGAGAACGAGTTGGGCTCGGAGAAGAAGAACGCTCTGAAACGAGACAAAACCATCCAGGGACTCAGTCTTGTGCTCAAAGAAAAGGAAAAAGAGaTTGAAGAGCTGTGCCATGAGATTGAGGACAGGGACGAGGCATTAGCCAAAGCCAGGGAGGCAGCGCACAAAGCCCAGCTCCAGAAATACCAGGGTGCGGAAGAGCACCAATCTCTGCTGATGGAGAAGCAGGCGGAGCTGTCCCAGCTCCAGGGCGAGCACCACACCAAGCGGCTGGAGGCGCAGAAGCTGCAGCGCTCCCTGGGCAGGAGGGAGCAGGAGCTGGCTGATCTGCAGCAGGCCAAGGAGCAGCTGGAGCAGGAGCTAGAGGAGCTGCAGCAGCAGAGGAAGAAGGGGGACAAAGCTCTCAATGAGATGCAGAACCAGCTAAAGAAGCTTAACGGGGAGCTGGGCGAGAGGGAAAGCAGTCTGGAGCAGCAGTACCAGGAGCAGCTGGAGCAGACAAAGAGGAGGCTGCAGAGTCACGAGGTCACCATCCAGCGCCTTACCACCTGCCTGGCCGACAAGGAGCAGCAGCTACAGGAATACATGAACATGATGAGAGACATAGAGCAGAGCAGAAGTCCTGAGGAAAGCGACACCATGCTGTCAAAGCTGCGAGAACGACTGAAAGAAAAAGAAAAGGCTCTGGAGCAAGCGCTGGATGAGAAGTTTTCAGCGCTAGAAGAGAAAGACAACGAGATCCACCAGCTGCGTCTGTcactcagggagaaggagagggacctGGAGAGACTCAACAACCTGCTGTCTCACAATGAGGACACCATCAACAGTTTTGACGCGTTGATCAAGGAGAAGGACGTGGAGCTGCAGCACCTTGCCAACACTATGAAGAACTTGCAGCGTGCCAAGCAGGATGTGGAGGACAACCTGAACCGAGCCTGCAGGGAGAAGGACTCCATCATCAGTCAGCTGCAGCTGTCCCTGGAGGGCAAGACCAAGGACATGGAGgcgATGGCAAGTTCCCTGCTGagccagtcccagtctcaggccCGTGACCTTGCAGAACAGATGGGTCAGAGGTTAAAGGTGGCAGAGGCCATGCTGGTGGACGCGGTCAAGGCCCGTGAGAGGCTGGTGGCGGACAACGAGAGCGCCGTGGAGGGCCTGCTGGCCACAATCGGCAGCAAGGACCAGCTTCTCAagGAGTCAGCGGAGCACTATAACAGGACACTGTCTGAGCGCATCCAGGAGATCGAGGAGCTGAGGCGACAGCTGTGTACCCGGCAGCAGCAGCTGGCCTCCGCTGAGAAACTTAGTTCCACTGTAACACAGGAGGGTTACCTAGAGATGGCCAAGCTCAGGGCCCTGCTGACCGAGAAGGAATCCATTATCATTAAACTTCTGGAGCGCGGCCGGGAGAGGGACCAGTTCCTGGCTGAGTTGAGGCAGAAGGAACCTGCACCGTCCCAGGTGCTGGAGCTCAGACAGACCATCCagttgctgcaggagagactggaggagagggaagGTGACTGCTCCAAGAGGAACAACAACGAAGACAGCATGGAGAAGGTCCCTCTCATCAAGAAGACAGTGGTCATCCTGAAGAAGGAGTTGTCTCAGAAGACTGAGGCTCTCAACAAGTCTCTGAAGAGGGAGAATGAGCTCAAGATGTCCCTGGCTGATCTCCAGTCAGTGTTGTCTGAGCTGGAGGGGCGTATCGAGGGCCAGGCGGCCAGCATAGACTCCCTCACCACCACCCTGGAGACCAAGGACGAGATTATAAACgacctccaccagcgtCTGGGCCAGAGAGGGGACAGTCAGACCAAGGGGCCCCAGGATCAGGCTGCTGAAGCCGGGGTGGCGCACTCGCTCCCTGGCCTCCCTCAGCGGGAGAGGACCATCATCGGTGGTGACAGCCAACAAGAGgtcCTGCCCTTGTTGGCTGACCTGCAGGTGGAGCACCGCTCTTTGAACCGAGCCCTGAGGGCCGAGCAGCAGCTCTACTCCAGCTTGGTTCGCACCGTCAAAGAACAGGACAGTGCCCAGCGTCTTCACGCCCTCCAGATGGAGCTGACAGCGGTGACGCTCCTCAGACAGCAGCTGGAAGAAGGGATCCGGAGCAACGAGGAGCTCAGAGAAGACCTGGAAAGAGAGATCGCCAGAACCAAGCTCTCAAAAGAAGGGCGCGAGGGCCAGGGCCACGTTGACCCCAGGGAGCTGCAGAGTGTCAGGCATCAGCTGGAGGACACCCAGCGCTGGAACGCCTCCCTGCAGGCCCGCCTCGGAGTCATCAAGAACCGCGGGGGAGGGGTGGGTGCCATCAATGACACCGCTGACACCCTGGGTAGTTTCATGGCCGACCAGACGTCCTACATGAGTATCTgtgtaggagagggggagggccTGGACCATCTGTCTGTAGAGGAGCTCCGACAGAAGGTGATGGAGCTGCAGGACTATGTCAGTAGACTGCTGGCTGTGAATGAGGACCTGCAGAGGACGCTCTCATTGACTGAGGGCTCAGACCACAACCTATCACAAAGCAGCTCTGGGAAAGAGCAGCATCTAGAGCGGAGACAGGAGAAAAAGTCACCGCACAGTGACAGAGTCCACAGTGACTCTGGCCAGGACAGAGGGAGCCAGACGGACAGCGGCCTTGGACAGgtggtagatggaaggctgaATGACGGCCACCAATCTGCTGATGTGACTGTGAGCAGTACCCTGGCCCAGATCCAGAGAGGGATATGGCCTCCCTGGTCTTCCAAAGCCACCAGTGAGAGCCAGTCACAGAGCAGCcagcagggagaggtggagagggacagaAACTGGGAGCAGCTTTGTTCTCTTCTGTCTGACTGTGGGGCCTTATCAGTCAACCACCTCAGGGAGGAGCTACAGAGGTTGCGGTCAGAGAATGTGGACCTGAGGGGTCAATTAAAGGAGGAGAAATCCAGAGAGTCCAAGGAGAGCGCCGACACCTTGGGCGACATCGGCGACGCACAGGGTGACCTCCGCAAGACATTGGAGAGGCTGAGGTCAGAGGCAAAAGGTCACCGCAAGATTATCCAGTTGCTGAAGGAGCAGCTGGAGAGGACTGAAGCGGTGGTGGACGTAGAGACCCTGTCGGATAGTCAGCCGGACATGATGGTGACGATGACCCAGAAGATGGAGAGGCTGCGTTTGGAGCAGGAGGGAGGAGCTCATGGTAGAGAGAAACTGcttgaaggagaagagagagggaaagcacAGGGAGATGGTCATGCCACACAGGGGAACAGCCACACACAGCCTGCCAAGGGACATTCATATCGCATCGCAAGACATGGGGCTGGTGTGAAATCTCGCCTGCCCGTCCCCGTGAGACACAATAAAACAGACACTGCTGGCAGCAGGGAGTCGGTAAACCAGGCGTCAGACGAGTTCTCTGAACATCTGAGAGGAGACGTACTACATCAACTAGGCCCGGACCACCACCATGACCAGCAAACGTCAGACTCTGACTCCCACAGCTCTCCTAGAGCCGCCCAGCACTGCAGCCCAGGCTCTAACCATAGCAGCACCACTAGGGGGACTACCAGACAGGGCCTGGAGACGGAGTTCCTCCGAGCTCAGGCCCCCACCGACGCCGAACTCCTATCCCAGTTGGAGCTCCTCCACCAGGAGTGCCAGGACAAGGAGCAGCTGATAGACCGTCTGGAGGAGCAGATGGCTGAGTGGGACGAACTTCAGGCCCAGCTCCGGGAGAAAGACCGGCTCAACTGTCATTATATGGAAGCCCTGCAGGCCGCCGAGTCCACCATCACTTATCTTACAGCCTGCAACCTGGACAGAAACAGCCAGGGTGGAGTACCAGGCTCTGGTTCAGAGTACAAACTCCAGAGACAGTGCATTGAGCTCCAGAAAGCCcttgaggagaaagagagactcaACACCCAGCTGGTGGAGTGCCTCAACATGGTCGAGGTGGCCATTGCCTCGCTCCCCGGCACCTCGTCATCCGCCAACGCCCTGGATGGTCATTTGGACCCCCAGGAGCTGTGCGCGAGGCTGGAGGCGGCCTTACGGCAGGTCAGTGCTTCTCTTGACCCTCTGGTCCTGAAAACCTCGGTTCCAGGGCCTTCGGGGTACCCCCTGAGCCTCAACGCGGAGCTGCAGCAGCAAGCGGACTCCCTGCAGGAGGCGCTGTGGGAGCAGAGCCGGCTGAATGTCGAGCTGCAGGAGAGGCTGAGGTCAGCTGAGGAGGCTGTCGCAGCACAGCAGGGCACTGCCAACACTGGCCTGGAAGGCAATTACGGCAGGCAGCCAGAAGAAGACCTGAATGAGATTCAGAGAGGGAATGAAACAAAGGAACAGAGAGGTTGGGGAAAACATCATGGAAGAAGCAAGTTTGCGTCCGATGTGAAGAGCAGCCTAGAATCTGAGCAAGTTGCCAAGCATCTCTCCGAGTGTCTCAGAGCAGCCGAGTCGGCCATAGGCTCACTCACAGCTCACTGTACCAACACGAGCACTAGCACCTCTATCACGACCAGAGCAGCTCAAACCAGCTCTGACTTACAACATCACCTAGACAGACTACAGAGAACTCTACAGGAGAGAGAAGCATTGGACGACCTGGGCTCCACTGAACCCACccaccaacagaccagtgagaaCCCCACACGACACACCACCCCTGGGGCTGAAACCCCCTCTCCCTTAGAGCTCCACCATAACATCTGCCTCCTCCAGAAGGCCTTCTACGAcctgcaggaggagaggggacgcAGGGAGAGGGAAGCCAAGACGATGGAGCCTGGAGCTTGGGTACCACCACAAGATGTCCAGGCCCAGCTGGAAAGCCTTCAGAAGGCtttgaaggagaggaagagggcctGTAAGAGCCTGGAAGAGAAGCTGGCCACGGCTCAGTCCATCATAGCTCTGCAGAACTCCTCCAAGAAGACCAGTCATGTAGCAACACAGAGAGCGCCCCCTCTGGAGCAGGAAGACAAGGGCGTGCAGGTGGACCTGCAAGACCTGGGTTACGAAACCAGTGGCAAGAGTGAGGCCGAGGTGGATAGGGAGGAGAGCAGTAGCACAGATATGCAGCTTGTCCCTGGCAGTGCTAACAGCAGCCTACCCTGCCTGCTGAAGCAGGACCAGGAGGAGCCCTCATTCTCCTCCACAGAGAACCTTGACACGGCCTCCAGTGCCTCctaccccagctcccccactCTCAGCTCCCCCAAGGTGAGTCTGAAGAGCCTCCAGACGTTTGACTCCTACGGTCTGTGTGAAGACCCAGCCCAGCTCCAGGCCCAGGTGAGGGAGCTGAAGACCCAGCTAGAGAGCCAACACCAGGTCATCCTCCACCTGCAGACCATGCTACGCCGCCGCGCCTCCCTGTCCAGCGAACTGTTGACCGCCACATCTGACTCCCACACTGCCACGGGAGGTCACACGGGCTccgagaggggggaggagggtgggaaggaggagaggagcctggagggagagggggaggtgacgAAGGAGAAGATGAAGAGTATGAGCATggagctggagagggagaggagcgtgAACAGGAGTATGAGCGAGCAGCTGTTGCAGGCCCAGCAGCGGAGTCGATCAGCCTCACCTGCCAGGATCGACTCCCTGGTGCAGTCGCAGGCAAGGGAACTGTCCCAGCTGCGTCGTCAGATCCAGGAGAGCCGGGGCCTGGGGGCACTGCATCGGATGCAGCTGGAGGAGCTGTCGCAGGCCTTCGAGGAGCTGCTACAGGCCAGCGACGTGGACTACTACGTGGGAGAGGTGTTCCGAGAGCAGCTGGACAAGAGCCTGGGCGTCCTGGAGAGGCTCGAGGGCCGGCTGGAGAAAGgAGACGCTCAACTGGATAACGAGGACGGGGCAGCACTGGAGCTGGcgcaaagGCTGTCTAAAGAGTTACAGGAGAAGACCCGTCTGGTCCAGAGTCTACAGATTCAGCTGCGAGGCCAAACTCCTAGCAGCCACCACAGCTCAGACTCGGACCTGTCGGACAGGGTCTCTAACCAGGCCACAGCCTCCTACCACAACAGCCCCACCCTGCCAGCCTGTAGCAAACTCCATGGCAACCAGGCCTATCATGGAATGAAAGAGTCCAACGGGAGATCAACGTCGGCTCCAGAGTCTGCAGCCCAGCAggatggggatgggggtgtgTCTGGCCCTGGGGTAGTTTCTGGACATAAATTGAGAGCCAGGCAGCTCCAGGGCCTGCAGAGGGAGAATGGGCGCCTGGTGGAGCAGCTGAGGAGCAGCGAGGAGCTTAACGCCACGCTGCGCTGCGAGCTGGACCTCCACCGCTCTATCCTGGTCCAGGGGATCTCCACACCACTACACGCccagggagaggggctggggcaGAGCCAGGGACAGGCTGGGGGGTCACCACAGAACAGGGAGGaccagaggggagagggacaccCAGCTTCACAGCAGGACACTGCCCAGCTATGCAGCATGAACCCAGACCTGTTAACAGAACACCTGTTGGAGATCAGAGCCCTGAGACAGCGTCTGGAGGAGACCATCTACAACAACGACCGACTCAGAGAACAGCTGGAGAGAAGACTgggtgaggtggagagagacccagCAGCCACCAACATCTTCATCCACGGTACGGAGGAGCAGGGCCAGCTGACCAGTGAGCTGCGGTTCCTCTGGGGACAGAACCAGGCCCTGAAGGAGCAGCTCAACCTGGGCTCCAGAGACAAGCAGAAGGAGAACGAGAAGCTGCGTGAGGCGCTGGCCAGACGGACGGCCAAGCTGGAGCAGAGCAGGAAGGAGTGTGAGGTCCTGAGACAGGAACACACACGTCTTCAGGACCGCCTGGACAGGAGcatcctggaacacacacacctccaggaCACACTGCACTACAGCCGCCAGGAGATCCACAGGTTGCAGTGTGAGGTGAAGATGCAGAGACAGCAGCTGTCAGACAGTCAACACCTCCTCCAGTCTCTACGCGTGGAGCTGCAGGTCTACGAACAGATCAAAACTgggacacacaagcacacagAGTCCAGTGGTACAGCCCAACAGTCTGGTTCAGGGTCTGGGTCGAACCAAGTGGACCTGGGGGAGCTGCTGTCAGAGATCcgccacctgaggctgcagctggagAGGAGCATCCAGACCAACACGTCCCTGAGGCAGAAACTGGAGGAACAGCTGCTCAGAGGTCCCAACCGCCCAGATACCATCAATATCAACTATCTACTGGCTACTTCAGAGGTTACAGGCAGGTCTCCTGGTTGTGAAGGCTGTGATCCTCCCTGCCACTCCTCTCACGATCTGAAGCGTCAAGCCCAGTCGGAGATGGACGCTGTGTCACAGTGTAGTAACAGTTCTGGGGACAGTATCTCTGGCTCGGCTCCCCCTCCATCCCGCTTGGTGCCCGGCCACCGCCTGTGGGCCAACCGCCAAGGGCGCCACATCCTGGGTCTTATCGAGGACCACAATGCCCTGCGGAAGCAGATCTCAGAGGGAAAGAGGCTCACCCGCACCATGGACACACACCTGCAGGAGTGTGTCTGCACACTCAGCCAGCAGGGGACTGACAACAGGGTGGTGGAGCagggtcacctgaaggctctgtccAGCAGTGTGAACACTATGCAGCAGGTCCTGGAGGAGGCTGGCCAGCTGCTCAAACTGGTCTGGAGGGTATCCCTGCCCTCTGGCACTGTGACCGCAACCAGCAACCAGcagGATGAGCTGTTGAAGAATGAGATAGTGAGTCTGAAGAGCCGTCTGTCCCAGCAGGAGCGGATGCTGAGCGGTGCAGTCAAACGGCTGCGGACCACCAACCAGCTTAAAGAGGGCATGGAGAGGGTCATTATTGACCAGCTGTCGTTAACCCATGGAGTGCTGAAGAAGGCCAGAGGGAATCTAGAGACAAATTATTATACCGTCTTTGGGCTGAAAGGCCTGTCTGGAGGACCAGAGGAAGGAGGTCCCGGTCAATGGTCAGTGACCATCGGTCCTTCAGGATCCTCCAAGGGAGCTCCGAGTGTCCTCAGCCCTGCCAGCAGATACACTGAATCcccagaggagaggaacagtgaCTCCTCATCCCACTGCAGCTACTAGAGCTGCCGATCCAATAAGTCTACGGTGCCTTCCTCTCGTCACCTTCCTTTGTCTGCACTGATGTGTTATACAGTTTAGCAAAAGCATTACTGGTTTTCCCATAATCTGTTCAAATTAAGGAAAAGGGACAAGGAGAGGTAGGCACTTTACTTCTCACTATTGAGATGTACCCCAGCTGTCAGGGACACTGCCTTCAGGCCCCTCCCCTGCTCTAATACTGTCTGCTTGTTGAGTAACCTTACCCTGAGCTATGCAAATAGGACTGTACTTGCACACTTGCCTATGTTCGGTACAAAAGTTGTAAAAGGAAATGTAACATTTTATCCCTCTTGTAAATGTAATTTCTTAAGATTGTAATATCCTTTTTATACAATGATGTCTTTCCCTGTCAATTGTGGGTTCTTGTTTATATATTGTCCTGGGCTTCGGAGTGTAATGTCTCAATGTAATGTCCTCAAAACATGATAAACAAGTCAACACATTAACTATACATGAAGACACAATCAAAATGTCATGTTCTACTAGGTATTTTATTAGCAAACCTGTTTTAATGTAGCAGTACGTGATGCACATAAATCAGAAAATCCAAGCAACATTTTTAAAAGGAGAAAAAAATCCCTCAGTCCAAGCATTAGAAAAGTCAAAATGATATAGAAAACAGCAGCTAAAGTAACTAGGCAGCTCATTACAAATGTATAAATTGATTAAATGTGGCGTCACAATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421538 lncRNA upstream 7019 14816759 ~ 14816984 (+) True G370913
TU421527 lncRNA upstream 25186 14798616 ~ 14798817 (+) False LOC118964542
TU421521 lncRNA upstream 30819 14791739 ~ 14793184 (+) True LOC110523276
TU421520 lncRNA upstream 38754 14784948 ~ 14785249 (+) True G370898
TU421519 lncRNA upstream 39124 14784654 ~ 14784879 (+) True G370897
TU421438 lncRNA downstream 9371 14901565 ~ 14916666 (+) True dolk
TU421456 lncRNA downstream 33777 14925971 ~ 14930826 (+) True G370841
TU421459 lncRNA downstream 38724 14930918 ~ 14931459 (+) True G370844
TU421467 lncRNA downstream 47778 14939972 ~ 14940348 (+) True G370852
TU421573 lncRNA downstream 50497 14942691 ~ 14942915 (+) True G370948
XM_036976536.1 mRNA upstream 18477 14798772 ~ 14805526 (+) False LOC118964542
XM_036976870.1 mRNA upstream 31454 14785471 ~ 14792549 (+) False LOC110523276
XM_021601840.2 mRNA upstream 64236 14706795 ~ 14759767 (+) False sh3glb2b
XM_021601856.2 mRNA downstream 20321 14912515 ~ 14916678 (+) False dolk
XM_021601874.2 mRNA downstream 103054 14995248 ~ 14999436 (+) True dnlz
XM_036976890.1 mRNA downstream 115596 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA downstream 115596 15007790 ~ 15014612 (+) True LOC110518391
XM_036976889.1 mRNA downstream 135609 15027803 ~ 15034589 (+) True LOC110523290
TU421530 other upstream 18532 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 455842 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 498108 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 564870 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1054707 13765247 ~ 13769296 (+) True G369763
TU421788 other downstream 155984 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 232096 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 899365 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1327412 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1843448 16735642 ~ 16738500 (+) True G372373

Expression Profile