RNA id: XM_036976884.1


Basic Information

Item Value
RNA id XM_036976884.1
length 2805
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110524957
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14988147 ~ 14995197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCACGTGAACCAATTAAATAATCGCAAACATTACCGCTTTAGTTTAGCTAGCGACATTTTTTGAATGTTTATATGTATTGGTAGCAAATTATAAATAAAAATGAGCGACGAAGCTGTATTTGAAACAATTGAAGAGGTCAATAAGCATATCTCACACGTGGAAGAGTCAACCTGTGTGAAATATATTTCTTACCGTGTGGACAAGCGATTCAATGACCAAGGTTGGAAACCACAGGACCACAAGAACCGGTTATACTGGGAATGGAAGTACGGCAAGGGTACTCCCTCTATCCCCTTTGACAGAGTACCCTTCATGTTCATCGGACACAAACTGATGGGATGCCACAGGGGCCGGGCAAAGTGTGGATTCAAGAAGAGGCAGGAACTTGAGGATCAAAGGGAAAAAGATGGCAAGGAAAAAAGAAACTTGTTGCTGAAAACCAAGAAAGTAGCATGCCCTGCTGTGTTCACAATCAGCCGCATTGTGAAGTTCCCTGGATTCAAGTTGGAGAAGGACACATCGCGGTTGAGGAGGGTCATGTCTATTTCCATCAAACAAGCTCTCCAGACAGACCCAGCCTCGGTGCAGTGGAAGATACAGTATTTCCTCAAAATACCCAGTGTCACTGACCACAAGGGCCATCCTATTGGAAAGGGTGCAGATCAGATGGACGACAGGGTCAAAGGTTACATCCGAGCGTTGGTGCAGCAGGGGGTGAGGAAGGTGAAGGAGGTAAAGAACCAGATGGTCCAGTACGTGCGGACGGAGCTGTTCCAAGACACGACCCCGCCGCCGCTGAGGCGCTTCTTCCCCACAGAGAAAACCATCCACGCCGTCATGGCTCAGGTCATCGCGGAGGAACACTACAGCAAAATAGACCTGGTCAACCTGCTGacaTTGGCAGAGAATTGGAAGGCAGAAGCTCCTAGAATCAACTTCCTGCTTAGGGTTCAATCAGAGAGCGAGAACCTGTTGCTCTGCTACCAGACGGACTGGCAGCGGTGGCTGCTTCGGCAGTATGGCAAGGAGGTGTGCTTCCTGGACGCGGCCTATAAGAGGACGCGCTTccccctgccactcttcttcctgTGCGTGCGCACCAATGTGAGCGTGGCGCCGGTGGGCCTGTTTGTCGTGCAGTCGAGGAGCGCCGAAGCCTTGGGGGAGGCGCTGGGGGTGTTCAGGCAGTGGAACCGGGGCTGGAGTCCAGCCTACATCCTCACTGAACACTGCCCTGTGGAGATGAAGGCGGTGGAAGCAGCATTCACAGGTGCTCAGGCAGTCTTCAGCGATCACCTGCGGGAGAGGACCTGGACCAAGTGGCTGAGCAACCGGTCCCGAGCCATCACCAACCAGGAGGGGATCTTTGATATGATGAAGGCCATCGCTGGTGCCCTTACCAGAGAGCAACACCAGGGGGCAGTAGAACTACTACAGCAGAGCCCCATCTGGTTGGAAAAGAGACAACTTTTCAAGAACTGGTTCACTAACAAGTGGCTGTCAGAGGAGAAGAGATGGGCGAACGCTGTGAGGGTTGATGTTGTCAACTTTGTGTCTATGGTGAACGGAGGTCTGGAAATGCAGAGCGACTTTTTCACACATAATAACATGAAGGTCCATAAAAAAGACACCCTGAGCCAAATGCTGCAGTTTCTGGTTGACGACTACTTCCCACAGATGCACCAAAGGTACACAGACCTCAACAGCCAGTCCTCTGGCGAGTACAGCCTCAACCCCACTGTGCCTCCGTTCCTGTGGCAtcgcccttggagtgtggtggcCCTGGTGATGGACAACATGTCTGCGGCCCTGCAAGACCCCGACATCGTGGTGGAGCAGGCCAGCGACGCCGCCGACCGCACCTTCCGGGTGAAGAGTCGGGCAGAGACCACGGCAGCGCGGTCCTACGCGGTCAGCTTCGGTTCAGAGTCCACCTGGCCCTCCTGTGAGTGTGAGGTGTGGAGGGACCAGCGGCTGCCCTGTGAACACTTCTGTCACGTCTTCAGGTCTGAGCTTAACTGGACCTGGGAGCACCTGTGTCCCAAATACAGGGACCACCCTCTGCTCACGCTGCATTCACAGACCACTCACACaacagaggagatggaggaagccCTCAATGGTCTAATGCATCTCTCCCCAgcttccccagtctctcttcagTGGGATGGGCCTGAAGAAACAGTGCCACTGGTGCAAACTCCTCAAACTCCACAGTTACAACTGTATAGCATACAAACACAGTGGGTGGCCCCACAGGCTTCACAGGGTCTGCGGGAGAGGGAGGAACTGCAAAAGGAGGAACTGCAGAGGGAGTGTGTGGCCAAACTCAAATCCATCATGGAGAATGTGAGTGGGATCAATGACATTGACCACCTACAGGAGCTCAGGCAGAAACTGGATGTTCTCCAGGCTCAGAGTGAGGCCATGCTGGTTCAGAAGGACGCTAGCGTCAAAACAGTTACCACCCCCATGGGGATGAGAAAAAGGGCAGGGGTGGAGATTATCGTGGCCATGCCCAAACGCATCAAAGTGCTCTCCCGGGTTGATGTAGAAAATGTTCAGAAATAGCTTTTTTCtaaaaagggaaaataaagaaTGTTCAGTATTAAAATGCAACTCTGCCACTTAACTTGTGGGTTGTTTTTATGTAGTATTTAGTGTTGTCCTACACAATTTGTATACTTTTTTAAAAAAATTGAATGTCTATTGTCTCTCTGTGATGAGCAAAACTGGAAATTGCTTGTCTGACGTTAAGTAAGATCCCTGAGATGACTAATAAAATAATTATAGTCACCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421766 lncRNA downstream 17316 14970576 ~ 14970831 (-) True G371110
TU421765 lncRNA downstream 19997 14967822 ~ 14968150 (-) True G371109
TU421764 lncRNA downstream 21708 14966135 ~ 14966439 (-) True G371108
TU421684 lncRNA downstream 58892 14925970 ~ 14929255 (-) True G371043
TU421724 lncRNA downstream 119098 14865745 ~ 14869049 (-) True G371069
TU421939 lncRNA upstream 1381 14996578 ~ 15120689 (-) True LOC110511258
TU421949 lncRNA upstream 13439 15008636 ~ 15049151 (-) True G371268
TU421960 lncRNA upstream 36603 15031800 ~ 15051963 (-) True G371272
TU421962 lncRNA upstream 38518 15033715 ~ 15053918 (-) True G371274
TU421966 lncRNA upstream 47007 15042204 ~ 15042688 (-) True G371276
XM_036976883.1 mRNA downstream 1956 14973249 ~ 14986191 (-) True LOC110523283
XM_021601859.2 mRNA downstream 28995 14930868 ~ 14959152 (-) True LOC110523281
XM_021601857.2 mRNA downstream 62607 14914865 ~ 14925540 (-) True phyhd1
XM_021601858.2 mRNA downstream 62609 14914865 ~ 14925538 (-) False phyhd1
XM_036976881.1 mRNA downstream 76556 14891979 ~ 14911591 (-) True nup188
XM_036976537.1 mRNA upstream 21559 15016756 ~ 15023815 (-) True LOC110523296
XM_036976538.1 mRNA upstream 41398 15036595 ~ 15043478 (-) True LOC110516435
XM_036976886.1 mRNA upstream 61183 15056380 ~ 15061384 (-) True LOC110519481
XM_036976885.1 mRNA upstream 83602 15078799 ~ 15082588 (-) True LOC110523297
XR_005051659.1 mRNA upstream 103588 15098785 ~ 15114354 (-) False LOC110523286
TU421214 other downstream 559556 14427338 ~ 14428591 (-) True G370635
TU420894 other downstream 779442 14207190 ~ 14208705 (-) True G370333
TU419308 other downstream 2282055 12705566 ~ 12706092 (-) False G368921
TU419309 other downstream 2282055 12705566 ~ 12706092 (-) True G368921
TU418958 other downstream 2851357 12134052 ~ 12136790 (-) True G368612
TU421988 other upstream 128278 15123475 ~ 15124789 (-) True G371294
TU422760 other upstream 700895 15696092 ~ 15698329 (-) True LOC110523302
TU422972 other upstream 980409 15975606 ~ 15976116 (-) True G372122
TU422973 other upstream 983305 15978502 ~ 15981215 (-) True G372123
TU424074 other upstream 1939038 16934235 ~ 16942191 (-) True LOC110523341

Expression Profile